Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 6.0e-135 484.2 245 100.0
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 7.9e-119 430.6 238 88.7
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 2.9e-113 412.1 238 85.7
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 6.0e-111 404.4 238 82.8
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.7e-108 395.2 239 81.6
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.5e-106 389.8 238 79.0
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 6.5e-105 384.4 238 77.3
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.4e-104 383.3 238 77.7
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 7.1e-104 380.9 239 77.0
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 4.6e-103 378.3 245 77.6
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 4.6e-103 378.3 239 75.7
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 4.6e-103 378.3 238 77.7
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 4.3e-101 371.7 239 74.9
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 1.3e-100 370.2 242 73.6
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 1.6e-100 369.8 242 74.0
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 3.7e-100 368.6 238 76.1
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.4e-99 366.7 238 74.4
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 3.1e-99 365.5 239 73.2
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 3.1e-99 365.5 238 74.8
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 3.1e-99 365.5 242 73.1
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 3.1e-99 365.5 238 76.1
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.1e-99 365.2 242 72.7
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 4.1e-99 365.2 238 74.4
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 2.6e-98 362.5 255 69.8
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 7.6e-98 360.9 239 71.5
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 1.0e-97 360.5 238 73.9
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 1.3e-97 360.1 238 74.4
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.7e-97 359.8 238 72.3
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 1.7e-97 359.8 238 72.3
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 2.2e-97 359.4 239 71.5
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 2.5e-96 355.9 238 73.9
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.5e-96 355.9 238 71.4
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 7.2e-96 354.4 238 72.3
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 2.7e-95 352.4 242 71.5
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 4.6e-95 351.7 254 67.3
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 1.3e-94 350.1 238 71.4
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 7.4e-93 344.4 269 65.4
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 9.7e-93 344.0 238 69.3
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 1.6e-92 343.2 238 72.7
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-90 337.0 242 70.7
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.5e-90 336.7 238 68.1
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 2.0e-90 336.3 238 67.6
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 3.4e-90 335.5 239 71.1
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 2.9e-89 332.4 239 66.9
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 3.8e-89 332.0 240 70.8
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 2.5e-88 329.3 238 68.9
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 2.5e-88 329.3 213 74.2
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 4.2e-88 328.6 239 66.5
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 5.5e-88 328.2 238 66.0
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 9.4e-88 327.4 240 69.6
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 6.1e-87 324.7 238 67.2
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.8e-86 323.2 202 76.2
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 3.9e-86 322.0 238 66.8
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 8.8e-86 320.9 227 70.0
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 1.1e-85 320.5 238 66.4
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 2.0e-85 319.7 239 68.2
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 3.3e-85 318.9 238 65.5
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 4.4e-85 318.5 238 64.7
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 5.7e-85 318.2 238 66.0
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 5.7e-85 318.2 238 66.0
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 9.7e-85 317.4 207 72.5
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 9.7e-85 317.4 241 64.3
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 2.8e-84 315.8 238 66.4
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 1.1e-83 313.9 237 66.2
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 5.3e-83 311.6 237 65.4
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 1.2e-82 310.5 238 66.4
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 2.6e-82 309.3 239 64.9
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 3.4e-82 308.9 255 61.6
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 5.9e-82 308.1 239 64.4
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 1.7e-81 306.6 239 64.9
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 1.4e-80 303.5 238 62.6
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.2e-79 300.4 218 69.3
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 6.1e-79 298.1 238 62.2
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 7.9e-79 297.7 242 61.6
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 1.4e-78 297.0 213 66.2
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.8e-78 296.6 249 64.3
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 3.9e-78 295.4 242 60.3
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.3e-76 290.4 202 70.3
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 9.1e-75 284.3 238 58.8
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 1.6e-74 283.5 239 58.6
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 4.5e-74 282.0 241 58.1
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 5.9e-74 281.6 209 65.6
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.2e-72 275.8 229 59.4
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 9.4e-72 274.2 177 76.8
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 9.4e-72 274.2 184 73.9
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.4e-70 270.4 218 63.3
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.0e-65 254.2 146 86.3
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 2.9e-65 252.7 198 61.1
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 8.5e-65 251.1 230 58.3
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 4.8e-60 235.3 179 65.4
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 6.3e-60 235.0 146 79.5
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 3.2e-56 222.6 209 55.0
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 1.6e-55 220.3 146 71.2
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 1.2e-53 214.2 239 44.4
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 2.4e-51 206.5 244 45.1
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 7.0e-51 204.9 249 43.4
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 1.9e-48 196.8 231 48.1
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.9e-48 196.8 121 75.2
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 4.3e-48 195.7 238 42.0
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 5.2e-46 188.7 118 75.4
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 2.6e-45 186.4 240 46.7
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 9.5e-40 167.9 122 64.8
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 6.8e-38 161.8 95 78.9
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 9.8e-37 157.9 152 53.3
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 7.0e-35 151.8 145 56.6
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 2.7e-34 149.8 138 59.4
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 1.7e-33 147.1 192 40.6
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.5e-29 134.0 125 56.0
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.5e-29 134.0 107 61.7
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.4e-27 125.6 272 31.2
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 5.6e-24 115.5 96 60.4
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.4e-22 110.9 122 47.5
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 2.4e-22 110.2 98 58.2
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.2e-21 107.8 90 57.8
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.3e-20 104.4 83 66.3
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 8.7e-17 91.7 99 49.5
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 6.2e-15 85.5 164 32.9
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 2.0e-13 80.5 60 65.0
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.2e-12 77.0 66 57.6
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.8e-12 76.3 41 90.2
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 6.4e-12 75.5 40 87.5
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.9e-11 73.9 40 92.5
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 7.8e-10 68.6 117 31.6
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 5.1e-09 65.9 40 80.0
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 3.3e-08 63.2 40 75.0
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 5.6e-08 62.4 40 77.5
AUR62037909 Chenopodium quinoa HOM05D006242 ORTHO05D007936 9.0e-06 55.1 56 46.4


User provided reference genes

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