Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.7e-246 855.5 423 100.0
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.3e-242 841.3 437 96.3
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.8e-232 808.9 437 92.7
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 1.1e-192 676.8 448 76.1
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 7.8e-191 670.6 437 76.4
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 6.8e-187 657.5 441 74.6
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 1.0e-182 643.7 442 73.5
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.1e-181 640.2 444 73.0
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.5e-181 639.8 444 73.2
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 7.3e-181 637.5 444 71.4
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.6e-180 636.3 444 72.7
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 2.1e-180 636.0 444 71.6
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 8.9e-179 630.6 447 71.4
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.7e-177 626.3 442 72.6
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 2.9e-177 625.5 448 70.8
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 4.1e-176 621.7 443 69.8
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 1.6e-175 619.8 445 71.2
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 4.6e-175 618.2 444 68.7
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.3e-174 616.7 440 69.1
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.3e-174 616.7 444 70.5
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 6.6e-174 614.4 440 68.6
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 8.7e-174 614.0 447 69.4
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.9e-173 612.8 442 69.5
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 4.3e-173 611.7 442 69.0
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 4.3e-173 611.7 442 68.6
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 5.6e-173 611.3 443 68.8
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 6.2e-172 607.8 442 68.6
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.1e-171 607.1 444 68.9
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 6.9e-171 604.4 449 69.7
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 2.0e-170 602.8 444 69.1
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 2.0e-170 602.8 441 67.8
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 2.2e-169 599.4 439 70.6
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 2.2e-169 599.4 444 69.1
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 3.8e-169 598.6 441 68.0
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 3.8e-169 598.6 441 67.6
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 4.9e-169 598.2 441 67.6
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.1e-168 597.0 449 67.7
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 1.4e-168 596.7 441 67.3
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.9e-168 596.3 445 68.8
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 2.4e-168 595.9 448 67.0
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 4.2e-168 595.1 443 68.6
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 9.3e-168 594.0 445 68.5
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 9.6e-165 583.9 444 66.7
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.6e-164 583.2 445 67.2
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 4.8e-164 581.6 436 67.7
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 8.1e-164 580.9 377 76.7
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 1.4e-163 580.1 436 67.7
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 1.2e-162 577.0 435 65.3
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 4.5e-162 575.1 434 65.9
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 5.8e-162 574.7 448 64.1
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 9.9e-162 573.9 452 66.2
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 4.9e-161 571.6 446 65.5
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 8.4e-161 570.9 452 65.7
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.4e-160 570.1 424 67.0
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 7.1e-160 567.8 429 66.2
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 7.1e-160 567.8 443 64.8
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 9.3e-160 567.4 442 62.7
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.2e-159 567.0 435 65.1
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 2.1e-159 566.2 440 65.7
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 2.1e-159 566.2 440 65.7
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 2.7e-159 565.8 436 64.7
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 5.1e-158 561.6 413 67.1
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 8.7e-158 560.8 429 64.8
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 8.7e-158 560.8 431 65.2
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.1e-157 560.5 438 65.8
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 5.6e-157 558.1 439 62.9
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 7.4e-157 557.8 429 68.8
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 7.4e-157 557.8 429 68.8
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 9.6e-157 557.4 435 63.2
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 2.1e-156 556.2 434 64.7
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 6.2e-156 554.7 441 62.4
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 1.8e-155 553.1 403 70.2
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 6.9e-155 551.2 445 62.7
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 2.0e-154 549.7 451 63.6
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 9.9e-154 547.4 429 66.7
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 1.7e-153 546.6 411 66.9
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.4e-152 543.5 456 60.7
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 4.2e-152 542.0 432 63.0
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 9.3e-152 540.8 422 63.5
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 2.7e-151 539.3 411 64.7
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.8e-150 536.6 365 70.4
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 5.6e-149 531.6 436 61.7
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 9.6e-149 530.8 435 64.6
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.1e-147 527.3 442 62.2
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 4.0e-147 525.4 436 61.7
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 5.3e-147 525.0 433 62.8
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 6.9e-147 524.6 440 60.9
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 2.6e-146 522.7 444 61.0
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.7e-145 520.0 455 60.4
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.2e-145 519.6 392 66.8
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 6.5e-145 518.1 428 61.9
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 2.5e-144 516.2 435 62.5
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 4.2e-144 515.4 443 61.4
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 4.2e-144 515.4 439 59.0
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 5.5e-144 515.0 441 63.0
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 9.3e-144 514.2 440 60.5
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 1.6e-143 513.5 422 59.7
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 2.7e-143 512.7 435 62.1
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.7e-143 512.7 448 59.6
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.6e-143 511.9 441 62.6
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 5.1e-142 508.4 439 60.8
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 3.3e-141 505.8 342 72.5
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 7.4e-141 504.6 438 61.2
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 1.3e-140 503.8 438 60.7
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 1.6e-140 503.4 438 61.2
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 1.6e-140 503.4 438 61.2
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 1.6e-140 503.4 434 61.5
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 2.2e-140 503.1 445 59.3
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 2.8e-140 502.7 433 61.0
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.0e-137 494.2 442 59.5
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.7e-137 493.4 446 58.7
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 8.5e-137 491.1 420 62.1
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.4e-136 490.3 443 58.9
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.6e-135 486.9 379 63.6
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 7.9e-135 484.6 445 55.3
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.8e-134 483.4 440 55.9
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 6.7e-134 481.5 357 67.2
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.5e-133 480.3 350 68.6
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.5e-133 480.3 336 68.2
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 5.7e-133 478.4 350 66.3
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.3e-132 477.2 411 58.9
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 2.2e-132 476.5 445 55.1
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 9.7e-125 451.1 354 65.0
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.7e-124 450.3 319 69.6
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 7.4e-117 424.9 437 53.3
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 3.2e-112 409.5 348 59.2
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.4e-110 404.1 305 65.6
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.4e-110 404.1 305 65.6
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.5e-109 400.6 336 61.6
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 8.3e-100 368.2 375 55.2
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 3.3e-96 356.3 408 48.3
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 5.6e-88 328.9 384 47.4
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 1.6e-82 310.8 232 64.7
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.5e-69 267.7 244 58.6
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 2.7e-66 256.9 160 75.6
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 4.0e-62 243.0 193 62.7
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 8.4e-60 235.3 366 41.5
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 4.2e-51 206.5 158 63.9
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 1.1e-46 191.8 239 46.0
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 1.5e-40 171.4 144 57.6
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 4.5e-29 133.3 107 60.7
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 3.2e-27 127.1 138 53.6
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 3.9e-25 120.2 109 61.5
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 8.7e-25 119.0 110 60.0
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.2e-18 98.6 99 48.5
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 1.1e-14 85.5 51 74.5
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 1.1e-08 65.5 67 49.3


User provided reference genes

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