Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025106 Camellia sinensis var. sinensis HOM05D008113 ORTHO05D009793 7.7e-89 330.5 171 100.0
CSS0012952 Camellia sinensis var. sinensis HOM05D008113 ORTHO05D009793 1.9e-50 203.0 165 66.1
CSS0027769 Camellia sinensis var. sinensis HOM05D008113 ORTHO05D009793 1.9e-50 203.0 165 66.1
Actinidia09200 Actinidia chinensis HOM05D008113 ORTHO05D009793 1.1e-39 167.2 168 57.1
Rhsim07G0126900 Rhododendron simsii HOM05D008113 ORTHO05D009793 1.1e-39 167.2 164 57.9
Rhsim07G0125800 Rhododendron simsii HOM05D008113 ORTHO05D009793 3.3e-39 165.6 162 56.8
Dinv28958 Davidia involucrata HOM05D008113 ORTHO05D009793 3.8e-35 152.1 164 54.3
Prupe.5G036500 Prunus persica HOM05D008113 ORTHO05D009793 4.6e-33 145.2 162 50.0
Actinidia09205 Actinidia chinensis HOM05D008113 ORTHO05D009793 6.6e-32 141.4 121 62.0
RcHm_v2.0_Chr7g0209731 Rosa chinensis HOM05D008113 ORTHO05D009793 3.3e-31 139.0 163 51.5
Cfa012440 Carpinus fangiana HOM05D008113 ORTHO05D009793 1.1e-29 134.0 164 47.0
FAN08G1006 Fragaria x ananassa HOM05D008113 ORTHO05D009793 2.9e-27 125.9 161 47.2
FAN04G2725 Fragaria x ananassa HOM05D008113 ORTHO05D009793 3.8e-27 125.6 161 46.6
Manes.17G015710 Manihot esculenta HOM05D008113 ORTHO05D009793 8.4e-27 124.4 164 46.3
FvH4_5g22080 Fragaria vesca HOM05D008113 ORTHO05D009793 1.4e-26 123.6 157 47.1
CiPaw.11G093400 Carya illinoinensis HOM05D008113 ORTHO05D009793 7.1e-26 121.3 164 44.5
Duzib205G0546 Durio zibethinus HOM05D008113 ORTHO05D009793 2.7e-25 119.4 151 48.3
Atru.chr6.1709 Acer truncatum HOM05D008113 ORTHO05D009793 1.0e-24 117.5 164 47.0
Thecc.03G227800 Theobroma cacao HOM05D008113 ORTHO05D009793 1.0e-24 117.5 151 49.0
Haze_08228 Corylus avellana HOM05D008113 ORTHO05D009793 1.3e-24 117.1 138 50.7
QL12p005179 Quercus lobata HOM05D008113 ORTHO05D009793 5.1e-24 115.2 165 43.6
Hma1.2p1_2704F.1_g327140 Hydrangea macrophylla HOM05D008113 ORTHO05D009793 3.3e-23 112.5 162 43.2
TWI60G1148 Tripterygium wilfordii HOM05D008113 ORTHO05D009793 7.4e-23 111.3 158 44.3
COL.COLO4_17032 Corchorus olitorius HOM05D008113 ORTHO05D009793 1.3e-22 110.5 154 47.4
Ciclev10012946m.g Citrus clementina HOM05D008113 ORTHO05D009793 2.1e-22 109.8 165 43.0
Hma1.2p1_1063F.1_g253560 Hydrangea macrophylla HOM05D008113 ORTHO05D009793 8.1e-22 107.8 162 42.0
DCAR_008271 Daucus carota HOM05D008113 ORTHO05D009793 1.4e-21 107.1 161 41.0
Sabra01G0111000 Salix brachista HOM05D008113 ORTHO05D009793 3.1e-21 105.9 168 43.5
Gorai.003G181900 Gossypium raimondii HOM05D008113 ORTHO05D009793 4.0e-21 105.5 148 45.9
Gohir.D03G171300 Gossypium hirsutum HOM05D008113 ORTHO05D009793 5.3e-21 105.1 148 45.9
Nn1g08044 Nelumbo nucifera HOM05D008113 ORTHO05D009793 4.5e-20 102.1 152 42.1
CsaV3_3G049170 Cucumis sativus L. HOM05D008113 ORTHO05D009793 5.8e-20 101.7 154 40.9
MSTRG.1985 Avicennia marina HOM05D008113 ORTHO05D009793 1.3e-19 100.5 169 39.6
FAN18G0344 Fragaria x ananassa HOM05D008113 ORTHO05D009793 1.3e-19 100.5 109 50.5
MELO3C003410.2 Cucumis melo HOM05D008113 ORTHO05D009793 2.2e-19 99.8 154 40.3
Medtr5g030480 Medicago truncatula HOM05D008113 ORTHO05D009793 2.9e-19 99.4 165 41.2
Glyma.09G204200 Glycine max HOM05D008113 ORTHO05D009793 4.9e-19 98.6 165 41.8
Gohir.A03G000900 Gossypium hirsutum HOM05D008113 ORTHO05D009793 6.5e-19 98.2 148 44.6
Ca_06079_v3 Cicer arietinum L. HOM05D008113 ORTHO05D009793 1.1e-18 97.4 165 40.6
Lj2g0011936 Lotus japonicus HOM05D008113 ORTHO05D009793 1.1e-18 97.4 164 39.6
Psat2g135920 Pisum sativum HOM05D008113 ORTHO05D009793 4.2e-18 95.5 163 38.7
Sed0025759 Sechium edule HOM05D008113 ORTHO05D009793 4.2e-18 95.5 161 37.3
VMungo1215G1592 Vigna mungo HOM05D008113 ORTHO05D009793 7.1e-18 94.7 165 41.8
Potri.001G142300 Populus trichocarpa HOM05D008113 ORTHO05D009793 1.6e-17 93.6 163 42.9
Phvul.002G141700 Phaseolus vulgaris HOM05D008113 ORTHO05D009793 3.5e-17 92.4 172 39.5
Sed0024146 Sechium edule HOM05D008113 ORTHO05D009793 3.9e-16 89.0 163 36.8
MD06G1034100 Malus domestica HOM05D008113 ORTHO05D009793 1.1e-15 87.4 158 42.4
Aqoxy3G02349 Aquilegia oxysepala HOM05D008113 ORTHO05D009793 3.3e-15 85.9 153 42.5
Migut.E00933 Erythranthe guttata HOM05D008113 ORTHO05D009793 7.4e-15 84.7 171 33.9
Sc22g0001540 Simmondsia chinensis HOM05D008113 ORTHO05D009793 2.1e-14 83.2 154 40.3
Ah.12g055040 Amaranthus hybridus HOM05D008113 ORTHO05D009793 6.2e-14 81.6 163 39.9
SGA_v2.0_scaffold20G09258 Striga asiatica HOM05D008113 ORTHO05D009793 6.2e-14 81.6 169 39.6
MBI04_g23600_MAGBIO Magnolia biondii HOM05D008113 ORTHO05D009793 8.2e-14 81.3 156 38.5
EL10Ac5g12119 Beta vulgaris HOM05D008113 ORTHO05D009793 1.1e-13 80.9 147 40.1
MD06G1034200 Malus domestica HOM05D008113 ORTHO05D009793 6.9e-13 78.2 159 39.6
Glyma.01G018600 Glycine max HOM05D008113 ORTHO05D009793 9.0e-13 77.8 167 36.5
PSO782G0685 Papaver somniferum HOM05D008113 ORTHO05D009793 1.2e-12 77.4 173 38.2
PSO063G7600 Papaver somniferum HOM05D008113 ORTHO05D009793 1.7e-11 73.6 175 36.0
CANSAT21G0751 Cannabis sativa HOM05D008113 ORTHO05D009793 2.9e-11 72.8 169 32.5
ECA233G2707 Erigeron canadensis HOM05D008113 ORTHO05D009793 3.8e-11 72.4 147 36.7
AUR62007292 Chenopodium quinoa HOM05D008113 ORTHO05D009793 1.4e-10 70.5 87 44.8
CARHR032060 Cardamine hirsuta HOM05D012772 ORTHO05D009793 2.5e-10 69.7 162 30.9
unitig_22.g5500 Utricularia gibba HOM05D008113 ORTHO05D009793 2.5e-10 69.7 174 31.0
PGSC0003DMG400001153 Solanum tuberosum HOM05D023668 ORTHO05D009793 4.2e-10 68.9 190 30.0
AUR62018715 Chenopodium quinoa HOM05D008113 ORTHO05D009793 1.6e-09 67.0 120 39.2
THA.LOC104814445 Tarenaya hassleriana HOM05D008113 ORTHO05D009793 1.0e-08 64.3 160 31.9
Carub.0001s3101 Capsella rubella HOM05D012772 ORTHO05D009793 6.7e-08 61.6 168 29.2
Nitab4.5_0002539g0010 Nicotiana tabacum HOM05D023668 ORTHO05D009793 2.5e-07 59.7 245 26.1
Cc08_g02770 Coffea canephora HOM05D008113 ORTHO05D009793 3.3e-07 59.3 101 37.6
Thhalv10009063m.g Eutrema salsugineum HOM05D012772 ORTHO05D009793 9.7e-07 57.8 172 28.5
Sp1g28300 Schrenkiella parvula HOM05D012772 ORTHO05D009793 1.3e-06 57.4 169 28.4
HPP92_014861 Vanilla planifolia HOM05D008113 ORTHO05D009793 1.3e-06 57.4 181 28.7
HanXRQChr11g0339791 Helianthus annuus HOM05D008113 ORTHO05D009793 1.6e-06 57.0 198 29.3
Sopen08g001050 Solanum pennellii HOM05D023668 ORTHO05D009793 2.8e-06 56.2 212 26.9


User provided reference genes

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