Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.6e-37 159.5 118 100.0
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 7.3e-22 107.5 137 73.7
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.4e-20 103.2 129 62.8
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.1e-20 102.1 82 76.8
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 6.9e-20 100.9 141 63.8
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 2.6e-19 99.0 78 80.8
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.7e-18 96.3 78 74.4
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.7e-18 96.3 81 66.7
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 2.2e-18 95.9 145 66.2
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.9e-18 95.5 84 81.0
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 2.9e-18 95.5 144 60.4
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 3.8e-18 95.1 79 65.8
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 6.4e-18 94.4 81 64.2
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.1e-17 93.6 93 60.2
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.1e-17 93.6 81 63.0
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.4e-17 93.2 56 83.9
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 2.4e-17 92.4 77 66.2
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 4.2e-17 91.7 83 61.4
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 4.2e-17 91.7 56 85.7
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 5.4e-17 91.3 56 82.1
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 7.1e-17 90.9 52 80.8
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 7.1e-17 90.9 56 82.1
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 7.1e-17 90.9 52 86.5
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 7.1e-17 90.9 98 60.2
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 9.3e-17 90.5 51 86.3
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 9.3e-17 90.5 85 64.7
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 9.3e-17 90.5 79 59.5
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 1.2e-16 90.1 52 84.6
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.2e-16 90.1 78 80.8
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.6e-16 89.7 53 79.2
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.6e-16 89.7 85 75.3
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.6e-16 89.7 80 65.0
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.1e-16 89.4 56 76.8
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 2.1e-16 89.4 56 78.6
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.1e-16 89.4 152 63.8
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 2.1e-16 89.4 142 58.5
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 2.7e-16 89.0 52 76.9
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.7e-16 89.0 52 76.9
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 2.7e-16 89.0 81 60.5
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 3.5e-16 88.6 53 79.2
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 3.5e-16 88.6 50 80.0
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.5e-16 88.6 52 84.6
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 4.6e-16 88.2 52 76.9
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 4.6e-16 88.2 84 59.5
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 4.6e-16 88.2 56 78.6
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 4.6e-16 88.2 97 67.0
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 4.6e-16 88.2 54 77.8
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 6.0e-16 87.8 52 75.0
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 6.0e-16 87.8 81 60.5
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 7.9e-16 87.4 51 86.3
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 7.9e-16 87.4 50 84.0
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 7.9e-16 87.4 86 59.3
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 7.9e-16 87.4 85 67.1
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 7.9e-16 87.4 56 75.0
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 7.9e-16 87.4 152 61.8
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 7.9e-16 87.4 55 83.6
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 7.9e-16 87.4 53 83.0
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 7.9e-16 87.4 47 87.2
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.0e-15 87.0 105 50.5
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.0e-15 87.0 50 78.0
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.0e-15 87.0 124 56.5
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.0e-15 87.0 81 60.5
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.0e-15 87.0 49 85.7
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.0e-15 87.0 49 85.7
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 1.0e-15 87.0 79 72.2
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 1.3e-15 86.7 52 76.9
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.3e-15 86.7 52 75.0
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 1.3e-15 86.7 100 63.0
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.3e-15 86.7 52 84.6
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 1.8e-15 86.3 85 55.3
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.8e-15 86.3 50 84.0
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.8e-15 86.3 84 60.7
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 2.3e-15 85.9 45 91.1
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.3e-15 85.9 123 57.7
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.3e-15 85.9 54 74.1
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.3e-15 85.9 124 56.5
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 2.3e-15 85.9 53 79.2
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 3.0e-15 85.5 50 82.0
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 3.0e-15 85.5 82 62.2
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 3.0e-15 85.5 79 72.2
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 3.0e-15 85.5 48 81.2
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 3.9e-15 85.1 47 83.0
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 3.9e-15 85.1 47 83.0
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 5.1e-15 84.7 78 74.4
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 5.1e-15 84.7 78 74.4
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 5.1e-15 84.7 56 73.2
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 6.7e-15 84.3 91 54.9
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 8.7e-15 84.0 83 59.0
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 1.1e-14 83.6 54 79.6
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.1e-14 83.6 84 60.7
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.1e-14 83.6 78 67.9
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.1e-14 83.6 121 58.7
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.1e-14 83.6 47 78.7
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.1e-14 83.6 50 80.0
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.1e-14 83.6 47 83.0
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.5e-14 83.2 55 76.4
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 2.5e-14 82.4 55 76.4
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 3.3e-14 82.0 79 72.2
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 3.3e-14 82.0 84 65.5
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 3.3e-14 82.0 44 86.4
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 3.3e-14 82.0 48 79.2
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 4.3e-14 81.6 52 82.7
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 7.4e-14 80.9 57 71.9
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 7.4e-14 80.9 52 80.8
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 7.4e-14 80.9 52 80.8
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 7.4e-14 80.9 53 77.4
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 7.4e-14 80.9 53 75.5
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 9.6e-14 80.5 52 80.8
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 9.6e-14 80.5 149 58.4
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 1.3e-13 80.1 51 80.4
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 1.3e-13 80.1 51 80.4
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.6e-13 79.7 46 80.4
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.8e-13 79.0 86 66.3
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 3.7e-13 78.6 78 74.4
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 4.8e-13 78.2 76 73.7
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 6.2e-13 77.8 74 70.3
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 6.2e-13 77.8 74 70.3
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 6.2e-13 77.8 40 90.0
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 6.2e-13 77.8 78 70.5
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 8.1e-13 77.4 48 68.8
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 1.1e-12 77.0 46 80.4
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 1.1e-12 77.0 54 74.1
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.1e-12 77.0 54 74.1
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.4e-12 76.6 74 75.7
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.8e-12 76.3 52 75.0
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 1.8e-12 76.3 43 76.7
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 2.4e-12 75.9 51 76.5
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 2.4e-12 75.9 94 55.3
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 2.4e-12 75.9 54 68.5
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 5.3e-12 74.7 45 73.3
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 9.0e-12 73.9 46 71.7
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 9.0e-12 73.9 46 71.7
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 1.4e-09 66.6 42 76.2
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 2.4e-09 65.9 37 81.1
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 5.5e-09 64.7 32 87.5
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 1.5e-06 56.6 31 71.0
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 5.6e-06 54.7 55 50.9
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 9.6e-06 53.9 46 58.7


User provided reference genes

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