Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025047 Camellia sinensis var. sinensis HOM05D004691 ORTHO05D005552 6.9e-50 200.3 98 100.0
CSS0006769 Camellia sinensis var. sinensis HOM05D004691 ORTHO05D005552 1.3e-43 179.5 103 88.3
CSS0029439 Camellia sinensis var. sinensis HOM05D004691 ORTHO05D005552 1.7e-19 99.4 161 41.0
DCAR_002717 Daucus carota HOM05D004691 ORTHO05D005552 1.1e-18 96.7 161 39.8
Actinidia00785 Actinidia chinensis HOM05D004691 ORTHO05D005552 2.4e-18 95.5 145 41.4
Dinv34779 Davidia involucrata HOM05D004691 ORTHO05D005552 1.2e-17 93.2 161 38.5
Migut.A00557 Erythranthe guttata HOM05D004691 ORTHO05D005552 3.5e-17 91.7 161 36.6
SGA_v2.0_scaffold89G27398 Striga asiatica HOM05D004691 ORTHO05D005552 3.5e-17 91.7 163 36.2
vmacro02596 Vaccinium macrocarpon HOM05D004691 ORTHO05D005552 3.5e-17 91.7 161 38.5
Hma1.2p1_0667F.1_g199750 Hydrangea macrophylla HOM05D004691 ORTHO05D005552 5.9e-17 90.9 161 37.3
CiPaw.08G107800 Carya illinoinensis HOM05D004691 ORTHO05D005552 7.7e-17 90.5 161 37.9
Rhsim13G0027100 Rhododendron simsii HOM05D004691 ORTHO05D005552 7.7e-17 90.5 161 37.9
Lj2A1168T23 Lonicera japonica HOM05D004691 ORTHO05D005552 1.0e-16 90.1 160 38.1
Lj9A529T34 Lonicera japonica HOM05D004691 ORTHO05D005552 1.0e-16 90.1 160 38.1
DCAR_018435 Daucus carota HOM05D004691 ORTHO05D005552 2.2e-16 89.0 161 37.9
MD11G1281700 Malus domestica HOM05D004691 ORTHO05D005552 2.2e-16 89.0 161 37.3
Potri.004G062600 Populus trichocarpa HOM05D004691 ORTHO05D005552 2.9e-16 88.6 161 37.3
ECA248G3453 Erigeron canadensis HOM05D004691 ORTHO05D005552 3.8e-16 88.2 161 36.6
Cpa.g.sc52.60 Carica papaya HOM05D004691 ORTHO05D005552 5.0e-16 87.8 161 36.6
Lalb_Chr06g0162871 Lupinus albus HOM05D004691 ORTHO05D005552 6.5e-16 87.4 161 36.0
MD03G1261300 Malus domestica HOM05D004691 ORTHO05D005552 6.5e-16 87.4 161 36.6
Nitab4.5_0002485g0080 Nicotiana tabacum HOM05D004691 ORTHO05D005552 6.5e-16 87.4 141 38.3
Thecc.01G274400 Theobroma cacao HOM05D004691 ORTHO05D005552 6.5e-16 87.4 161 36.0
Cfa006171 Carpinus fangiana HOM05D004691 ORTHO05D005552 8.5e-16 87.0 161 36.6
Phvul.001G053600 Phaseolus vulgaris HOM05D004691 ORTHO05D005552 8.5e-16 87.0 161 36.0
PGR119G1056 Punica granatum HOM05D004691 ORTHO05D005552 8.5e-16 87.0 161 37.3
PGR119G1812 Punica granatum HOM05D004691 ORTHO05D005552 8.5e-16 87.0 161 37.3
Duzib138G0407 Durio zibethinus HOM05D004691 ORTHO05D005552 1.1e-15 86.7 161 36.0
Manes.05G079200 Manihot esculenta HOM05D004691 ORTHO05D005552 1.1e-15 86.7 161 36.0
SGA_v2.0_scaffold96G29067 Striga asiatica HOM05D004691 ORTHO05D005552 1.1e-15 86.7 161 35.4
ClCG07G000390 Citrullus lanatus HOM05D004691 ORTHO05D005552 1.9e-15 85.9 160 36.2
Phvul.001G054100 Phaseolus vulgaris HOM05D004691 ORTHO05D005552 1.9e-15 85.9 161 36.0
Prupe.1G577100 Prunus persica HOM05D004691 ORTHO05D005552 1.9e-15 85.9 161 35.4
VMungo0647G0910 Vigna mungo HOM05D004691 ORTHO05D005552 1.9e-15 85.9 161 35.4
CANSAT25G2296 Cannabis sativa HOM05D004691 ORTHO05D005552 2.5e-15 85.5 161 36.0
FAN20G3100 Fragaria x ananassa HOM05D004691 ORTHO05D005552 2.5e-15 85.5 149 37.6
FAN27G3192 Fragaria x ananassa HOM05D004691 ORTHO05D005552 2.5e-15 85.5 161 36.0
RcHm_v2.0_Chr6g0290451 Rosa chinensis HOM05D004691 ORTHO05D005552 2.5e-15 85.5 161 36.0
Sed0017796 Sechium edule HOM05D004691 ORTHO05D005552 2.5e-15 85.5 161 36.6
ATR0787G203 Amborella trichopoda HOM05D004691 ORTHO05D005552 3.2e-15 85.1 161 34.8
Cc08_g05170 Coffea canephora HOM05D004691 ORTHO05D005552 3.2e-15 85.1 161 36.0
COL.COLO4_11872 Corchorus olitorius HOM05D004691 ORTHO05D005552 3.2e-15 85.1 161 35.4
Dinv32905 Davidia involucrata HOM05D004691 ORTHO05D005552 3.2e-15 85.1 161 36.0
FAN24G2920 Fragaria x ananassa HOM05D004691 ORTHO05D005552 3.2e-15 85.1 161 35.4
unitig_748.g8144 Utricularia gibba HOM05D004691 ORTHO05D005552 3.2e-15 85.1 161 36.0
CsaV3_2G013570 Cucumis sativus L. HOM05D004691 ORTHO05D005552 4.2e-15 84.7 161 36.0
Glyma.17G206800 Glycine max HOM05D004691 ORTHO05D005552 4.2e-15 84.7 161 34.8
HanXRQChr08g0213401 Helianthus annuus HOM05D004691 ORTHO05D005552 4.2e-15 84.7 160 36.2
GSVIVG01001184001 Vitis vinifera HOM05D004691 ORTHO05D005552 5.5e-15 84.3 160 36.9
Ciclev10022626m.g Citrus clementina HOM05D004691 ORTHO05D005552 7.2e-15 84.0 161 35.4
FvH4_2g23200 Fragaria vesca HOM05D004691 ORTHO05D005552 7.2e-15 84.0 161 34.8
TPR.G13465 Trifolium pratense HOM05D004691 ORTHO05D005552 7.2e-15 84.0 161 34.8
MELO3C014296.2 Cucumis melo HOM05D004691 ORTHO05D005552 9.4e-15 83.6 161 35.4
Thhalv10005052m.g Eutrema salsugineum HOM05D004691 ORTHO05D005552 9.4e-15 83.6 161 36.6
Glyma.07G180400 Glycine max HOM05D004691 ORTHO05D005552 9.4e-15 83.6 161 34.8
SalBow4G0422 Salvia bowleyana HOM05D004691 ORTHO05D005552 9.4e-15 83.6 169 34.9
THA.LOC104823041 Tarenaya hassleriana HOM05D004691 ORTHO05D005552 9.4e-15 83.6 161 35.4
Gohir.D12G003600 Gossypium hirsutum HOM05D004691 ORTHO05D005552 1.6e-14 82.8 161 34.8
Gorai.008G003400 Gossypium raimondii HOM05D004691 ORTHO05D005552 1.6e-14 82.8 161 34.8
Medtr1g047130 Medicago truncatula HOM05D004691 ORTHO05D005552 1.6e-14 82.8 161 33.5
Sc17g0001280 Simmondsia chinensis HOM05D004691 ORTHO05D005552 1.6e-14 82.8 161 35.4
Aa31LG11G2940 Aethionema arabicum HOM05D004691 ORTHO05D005552 2.1e-14 82.4 161 36.0
TPR.G11285 Trifolium pratense HOM05D004691 ORTHO05D005552 2.1e-14 82.4 161 34.2
TWI75G0960 Tripterygium wilfordii HOM05D004691 ORTHO05D005552 2.1e-14 82.4 167 34.1
Hund12255 Selenicereus undatus HOM05D004691 ORTHO05D005552 2.7e-14 82.0 160 36.9
BolC7t44929H Brassica oleracea HOM05D004691 ORTHO05D005552 6.1e-14 80.9 161 36.0
Ca_01504_v3 Cicer arietinum L. HOM05D004691 ORTHO05D005552 6.1e-14 80.9 161 33.5
Eucgr.K03344 Eucalyptus grandis HOM05D004691 ORTHO05D005552 6.1e-14 80.9 164 34.8
Lj1g0022890 Lotus japonicus HOM05D004691 ORTHO05D005552 6.1e-14 80.9 161 33.5
AL6G34810 Arabidopsis lyrata HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 35.4
AT5G23535 Arabidopsis thaliana HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 35.4
BcaB04g19862 Brassica carinata HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 35.4
BcaC04g23501 Brassica carinata HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 35.4
A06p34500 Brassica napus HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 35.4
A09p06900 Brassica napus HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 35.4
C07p44050 Brassica napus HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 35.4
C09p07630 Brassica napus HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 35.4
BolC9t53681H Brassica oleracea HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 35.4
BraA06t26378Z Brassica rapa HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 35.4
BraA09t36337Z Brassica rapa HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 35.4
Lsat_1_v5_gn_5_187201 Lactuca sativa HOM05D004691 ORTHO05D005552 8.0e-14 80.5 56 71.4
Psat6g047600 Pisum sativum HOM05D004691 ORTHO05D005552 8.0e-14 80.5 152 34.2
Sp2g23660 Schrenkiella parvula HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 35.4
Solyc08g075850.3 Solanum lycopersicum HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 34.2
Sopen08g024490 Solanum pennellii HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 34.2
PGSC0003DMG400030873 Solanum tuberosum HOM05D004691 ORTHO05D005552 8.0e-14 80.5 161 34.2
AL4G15050 Arabidopsis lyrata HOM05D004691 ORTHO05D005552 1.0e-13 80.1 161 35.4
arahy.Tifrunner.gnm1.ann1.DJ1VY2 Arachis hypogaea HOM05D004691 ORTHO05D005552 1.0e-13 80.1 161 36.0
CANSAT80G0426 Cannabis sativa HOM05D004691 ORTHO05D005552 1.0e-13 80.1 161 33.5
Carub.0006s2131 Capsella rubella HOM05D004691 ORTHO05D005552 1.0e-13 80.1 161 35.4
CARHR189990 Cardamine hirsuta HOM05D004691 ORTHO05D005552 1.0e-13 80.1 161 35.4
arahy.Tifrunner.gnm1.ann1.2S5JQC Arachis hypogaea HOM05D004691 ORTHO05D005552 1.4e-13 79.7 161 35.4
arahy.Tifrunner.gnm1.ann1.3Q9Y1V Arachis hypogaea HOM05D004691 ORTHO05D005552 1.4e-13 79.7 161 35.4
arahy.Tifrunner.gnm1.ann1.GXX04Y Arachis hypogaea HOM05D004691 ORTHO05D005552 1.4e-13 79.7 161 35.4
Peaxi162Scf00408g00833 Petunia axillaris HOM05D004691 ORTHO05D005552 1.4e-13 79.7 161 33.5
Prupe.8G237600 Prunus persica HOM05D004691 ORTHO05D005552 1.4e-13 79.7 161 33.5
Aqoxy5G00433 Aquilegia oxysepala HOM05D004691 ORTHO05D005552 2.3e-13 79.0 160 34.4
Lj3A731T61 Lonicera japonica HOM05D004691 ORTHO05D005552 3.0e-13 78.6 161 33.5
Oeu037306.1 Olea europaea HOM05D004691 ORTHO05D005552 3.0e-13 78.6 56 66.1
Sabra04G0041500 Salix brachista HOM05D004691 ORTHO05D005552 3.0e-13 78.6 161 34.8
Nitab4.5_0000108g0400 Nicotiana tabacum HOM05D004691 ORTHO05D005552 5.2e-13 77.8 161 32.9
TWI18G0899 Tripterygium wilfordii HOM05D004691 ORTHO05D005552 5.2e-13 77.8 161 32.9
Duzib133G0007 Durio zibethinus HOM05D004691 ORTHO05D005552 6.8e-13 77.4 56 67.9
EL10Ac4g08388 Beta vulgaris HOM05D004691 ORTHO05D005552 8.8e-13 77.0 161 33.5
Haze_24303 Corylus avellana HOM05D004691 ORTHO05D005552 8.8e-13 77.0 54 70.4
Hma1.2p1_0525F.1_g172750 Hydrangea macrophylla HOM05D004691 ORTHO05D005552 8.8e-13 77.0 56 67.9
Gohir.A12G003900 Gossypium hirsutum HOM05D004691 ORTHO05D005552 1.2e-12 76.6 56 67.9
CDE04G1639 Ceratophyllum demersum HOM05D004691 ORTHO05D005552 1.5e-12 76.3 160 34.4
Glyma.02G145800 Glycine max HOM05D004691 ORTHO05D005552 1.5e-12 76.3 56 66.1
Nn1g02379 Nelumbo nucifera HOM05D004691 ORTHO05D005552 1.5e-12 76.3 56 69.6
TAR260G0003 Trochodendron aralioides HOM05D004691 ORTHO05D005552 1.5e-12 76.3 161 31.7
FvH4_2g22413 Fragaria vesca HOM05D004691 ORTHO05D005552 2.0e-12 75.9 56 64.3
SalBow8G2642 Salvia bowleyana HOM05D004691 ORTHO05D005552 2.0e-12 75.9 56 67.9
Lj5g0022765 Lotus japonicus HOM05D004691 ORTHO05D005552 2.6e-12 75.5 56 66.1
QL02p011400 Quercus lobata HOM05D004691 ORTHO05D005552 2.6e-12 75.5 56 66.1
Psat6g046920 Pisum sativum HOM05D004691 ORTHO05D005552 3.4e-12 75.1 56 62.5
Sed0022085 Sechium edule HOM05D004691 ORTHO05D005552 5.7e-12 74.3 56 66.1
PGSC0003DMG400017984 Solanum tuberosum HOM05D004691 ORTHO05D005552 5.7e-12 74.3 161 32.3
Os11g0139100 Oryza sativa ssp. japonica HOM05D004691 ORTHO05D005552 7.5e-12 73.9 56 64.3
Os12g0135900 Oryza sativa ssp. japonica HOM05D004691 ORTHO05D005552 7.5e-12 73.9 56 64.3
PSO675G3171 Papaver somniferum HOM05D004691 ORTHO05D005552 7.5e-12 73.9 160 31.2
TAR362G0310 Trochodendron aralioides HOM05D004691 ORTHO05D005552 9.8e-12 73.6 56 64.3
Zm00001eb196350 Zea mays HOM05D004691 ORTHO05D005552 9.8e-12 73.6 56 62.5
CAN.G1427.9 Capsicum annuum HOM05D004691 ORTHO05D005552 1.7e-11 72.8 56 62.5
PSO761G0020 Papaver somniferum HOM05D004691 ORTHO05D005552 1.7e-11 72.8 160 33.8
PSO017G2306 Papaver somniferum HOM05D004691 ORTHO05D005552 2.8e-11 72.0 56 60.7
EL10Ac4g08386 Beta vulgaris HOM05D004691 ORTHO05D005552 4.8e-11 71.2 56 60.7
PSO210G7297 Papaver somniferum HOM05D004691 ORTHO05D005552 6.3e-11 70.9 56 60.7
Nitab4.5_0003992g0020 Nicotiana tabacum HOM05D004691 ORTHO05D005552 1.1e-10 70.1 161 30.4
RcHm_v2.0_Chr1g0329861 Rosa chinensis HOM05D004691 ORTHO05D005552 1.4e-10 69.7 60 58.3
RcHm_v2.0_Chr1g0329981 Rosa chinensis HOM05D004691 ORTHO05D005552 2.4e-10 68.9 51 64.7
SEGI_08900 Sequoiadendron giganteum HOM05D004691 ORTHO05D005552 3.1e-10 68.6 56 60.7
HPP92_004579 Vanilla planifolia HOM05D004691 ORTHO05D005552 3.1e-10 68.6 56 62.5
EL10Ac2g03130 Beta vulgaris HOM05D004691 ORTHO05D005552 4.1e-10 68.2 56 58.9
Mapoly0064s0052 Marchantia polymorpha HOM05D004691 ORTHO05D005552 2.5e-07 58.9 56 50.0
Lsat_1_v5_gn_9_49380 Lactuca sativa HOM05D004691 ORTHO05D005552 4.2e-07 58.2 138 31.2
Pp3c2_11670 Physcomitrium patens HOM05D004691 ORTHO05D005552 4.2e-07 58.2 56 57.1
AagrBONN_evm.TU.Sc2ySwM_117.3924 Anthoceros agrestis HOM05D004691 ORTHO05D005552 9.4e-07 57.0 56 53.6
CBR_g54238 Chara braunii HOM05D004691 ORTHO05D005552 1.6e-06 56.2 58 50.0
AUR62038661 Chenopodium quinoa HOM05D004691 ORTHO05D005552 8.0e-06 53.9 127 32.3


User provided reference genes

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