Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025031 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 1.3e-54 216.1 101 100.0
CSS0041606 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 1.1e-31 139.8 101 72.3
CSS0016411 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 2.5e-31 138.7 101 72.3
CSS0012974 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 1.2e-25 119.8 129 55.0
CSS0017141 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 5.7e-23 110.9 123 53.7
CSS0029731 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 9.7e-23 110.2 99 60.6
CSS0034480 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 9.7e-23 110.2 101 61.4
CSS0047957 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 3.7e-22 108.2 101 58.4
CDE09G1433 Ceratophyllum demersum HOM05D001499 ORTHO05D001560 2.9e-19 98.6 89 58.4
Oeu008164.1 Olea europaea HOM05D001499 ORTHO05D001560 6.5e-19 97.4 51 86.3
Cc06_g17670 Coffea canephora HOM05D001499 ORTHO05D001560 1.4e-18 96.3 89 53.9
CSS0008595 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 1.9e-18 95.9 51 86.3
CSS0040554 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 1.9e-18 95.9 51 86.3
Lj5g0024774 Lotus japonicus HOM05D001499 ORTHO05D001560 1.9e-18 95.9 89 57.3
Sc13g0001640 Simmondsia chinensis HOM05D001499 ORTHO05D001560 1.9e-18 95.9 89 55.1
Hma1.2p1_1280F.1_g272530 Hydrangea macrophylla HOM05D001499 ORTHO05D001560 3.2e-18 95.1 89 53.9
CAN.G128.7 Capsicum annuum HOM05D001499 ORTHO05D001560 5.5e-18 94.4 51 84.3
GSVIVG01033256001 Vitis vinifera HOM05D001499 ORTHO05D001560 7.2e-18 94.0 89 53.9
CiPaw.09G039100 Carya illinoinensis HOM05D001499 ORTHO05D001560 9.4e-18 93.6 89 55.1
Lju124C43T7 Lonicera japonica HOM05D001499 ORTHO05D001560 9.4e-18 93.6 89 56.2
COL.COLO4_04401 Corchorus olitorius HOM05D001499 ORTHO05D001560 1.2e-17 93.2 89 55.1
FvH4_6g24270 Fragaria vesca HOM05D001499 ORTHO05D001560 1.2e-17 93.2 89 52.8
Nitab4.5_0000364g0080 Nicotiana tabacum HOM05D001499 ORTHO05D001560 1.2e-17 93.2 54 75.9
RcHm_v2.0_Chr3g0482921 Rosa chinensis HOM05D001499 ORTHO05D001560 1.2e-17 93.2 89 52.8
Actinidia22801 Actinidia chinensis HOM05D001499 ORTHO05D001560 1.6e-17 92.8 51 82.4
DCAR_009067 Daucus carota HOM05D001499 ORTHO05D001560 2.1e-17 92.4 89 56.2
Migut.K00092 Erythranthe guttata HOM05D001499 ORTHO05D001560 2.1e-17 92.4 51 78.4
PGR004G0169 Punica granatum HOM05D001499 ORTHO05D001560 2.1e-17 92.4 51 82.4
VMungo0720G2024 Vigna mungo HOM05D001499 ORTHO05D001560 2.1e-17 92.4 51 82.4
Nitab4.5_0003307g0080 Nicotiana tabacum HOM05D001499 ORTHO05D001560 2.7e-17 92.0 51 78.4
Lalb_Chr20g0110561 Lupinus albus HOM05D001499 ORTHO05D001560 3.6e-17 91.7 51 78.4
Peaxi162Scf00109g00516 Petunia axillaris HOM05D001499 ORTHO05D001560 3.6e-17 91.7 51 78.4
Phvul.007G251800 Phaseolus vulgaris HOM05D001499 ORTHO05D001560 3.6e-17 91.7 51 78.4
TAR633G1315 Trochodendron aralioides HOM05D001499 ORTHO05D001560 3.6e-17 91.7 51 80.4
Ca_10365_v3 Cicer arietinum L. HOM05D001499 ORTHO05D001560 4.7e-17 91.3 51 80.4
Glyma.02G185300 Glycine max HOM05D001499 ORTHO05D001560 4.7e-17 91.3 51 78.4
Manes.08G051700 Manihot esculenta HOM05D001499 ORTHO05D001560 4.7e-17 91.3 89 52.8
PSO339G1573 Papaver somniferum HOM05D001499 ORTHO05D001560 4.7e-17 91.3 89 51.7
PSO384G4106 Papaver somniferum HOM05D001499 ORTHO05D001560 4.7e-17 91.3 89 51.7
Potri.006G049100 Populus trichocarpa HOM05D001499 ORTHO05D001560 4.7e-17 91.3 89 53.9
Thecc.05G149400 Theobroma cacao HOM05D001499 ORTHO05D001560 4.7e-17 91.3 51 80.4
vmacro07834 Vaccinium macrocarpon HOM05D001499 ORTHO05D001560 4.7e-17 91.3 51 82.4
Eucgr.A02337 Eucalyptus grandis HOM05D001499 ORTHO05D001560 6.1e-17 90.9 51 80.4
Solyc10g080080.3 Solanum lycopersicum HOM05D001499 ORTHO05D001560 6.1e-17 90.9 51 78.4
Sopen10g030690 Solanum pennellii HOM05D001499 ORTHO05D001560 6.1e-17 90.9 51 78.4
Aqoxy2G00225 Aquilegia oxysepala HOM05D001499 ORTHO05D001560 7.9e-17 90.5 51 84.3
FAN02G2115 Fragaria x ananassa HOM05D001499 ORTHO05D001560 7.9e-17 90.5 51 78.4
FAN05G4798 Fragaria x ananassa HOM05D001499 ORTHO05D001560 7.9e-17 90.5 51 78.4
FAN09G3104 Fragaria x ananassa HOM05D001499 ORTHO05D001560 7.9e-17 90.5 51 78.4
FAN14G3970 Fragaria x ananassa HOM05D001499 ORTHO05D001560 7.9e-17 90.5 51 78.4
Lalb_Chr25g0287171 Lupinus albus HOM05D001499 ORTHO05D001560 7.9e-17 90.5 89 52.8
Hund19144 Selenicereus undatus HOM05D001499 ORTHO05D001560 7.9e-17 90.5 51 80.4
TAR636G3397 Trochodendron aralioides HOM05D001499 ORTHO05D001560 7.9e-17 90.5 51 78.4
Migut.J01745 Erythranthe guttata HOM05D001499 ORTHO05D001560 1.0e-16 90.1 51 78.4
QL07p001098 Quercus lobata HOM05D000009 ORTHO05D000008 1.0e-16 90.1 51 78.4
Sed0024523 Sechium edule HOM05D001499 ORTHO05D001560 1.0e-16 90.1 89 51.7
Cpa.g.sc967.2 Carica papaya HOM05D001499 ORTHO05D001560 1.4e-16 89.7 51 78.4
ClCG04G003420 Citrullus lanatus HOM05D001499 ORTHO05D001560 1.4e-16 89.7 51 78.4
HanXRQChr13g0396471 Helianthus annuus HOM05D001499 ORTHO05D001560 1.4e-16 89.7 89 51.7
Sed0013588 Sechium edule HOM05D001499 ORTHO05D001560 1.4e-16 89.7 51 76.5
Sopen04g008040 Solanum pennellii HOM05D001499 ORTHO05D001560 1.4e-16 89.7 74 58.1
Ah.04g151570 Amaranthus hybridus HOM05D001499 ORTHO05D001560 1.8e-16 89.4 51 78.4
Cfa016805 Carpinus fangiana HOM05D001499 ORTHO05D001560 1.8e-16 89.4 51 80.4
AUR62026055 Chenopodium quinoa HOM05D001499 ORTHO05D001560 1.8e-16 89.4 51 78.4
Haze_19836 Corylus avellana HOM05D001499 ORTHO05D001560 1.8e-16 89.4 51 80.4
PGSC0003DMG400023691 Solanum tuberosum HOM05D001499 ORTHO05D001560 1.8e-16 89.4 51 74.5
EL10Ac3g07103 Beta vulgaris HOM05D001499 ORTHO05D001560 2.3e-16 89.0 51 78.4
Glyma.10G113100 Glycine max HOM05D001499 ORTHO05D001560 2.3e-16 89.0 51 76.5
Gohir.D03G069600 Gossypium hirsutum HOM05D001499 ORTHO05D001560 2.3e-16 89.0 51 80.4
Gorai.003G091100 Gossypium raimondii HOM05D001499 ORTHO05D001560 2.3e-16 89.0 51 80.4
Lsat_1_v5_gn_5_161241 Lactuca sativa HOM05D001499 ORTHO05D001560 2.3e-16 89.0 51 80.4
Medtr1g053160 Medicago truncatula HOM05D001499 ORTHO05D001560 2.3e-16 89.0 51 80.4
Psat6g120840 Pisum sativum HOM05D001499 ORTHO05D001560 2.3e-16 89.0 51 80.4
TPR.G29104 Trifolium pratense HOM05D001499 ORTHO05D001560 2.3e-16 89.0 51 80.4
unitig_26.g9049 Utricularia gibba HOM05D001499 ORTHO05D001560 2.3e-16 89.0 51 78.4
Aa31LG1G23700 Aethionema arabicum HOM05D001499 ORTHO05D001560 3.0e-16 88.6 51 78.4
AUR62024464 Chenopodium quinoa HOM05D001499 ORTHO05D001560 3.0e-16 88.6 51 76.5
Duzib106G0340 Durio zibethinus HOM05D001499 ORTHO05D001560 3.0e-16 88.6 51 78.4
Gohir.A02G107400 Gossypium hirsutum HOM05D001499 ORTHO05D001560 3.0e-16 88.6 51 78.4
AL4G39980 Arabidopsis lyrata HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 78.4
AT2G41680 Arabidopsis thaliana HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 78.4
BcaC01g05324 Brassica carinata HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 78.4
A03p23360 Brassica napus HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 78.4
C03p27880 Brassica napus HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 78.4
BolC3t15159H Brassica oleracea HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 78.4
BraA03t11553Z Brassica rapa HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 78.4
Carub.0004s2395 Capsella rubella HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 78.4
Dinv39621 Davidia involucrata HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 78.4
Duzib093G1808 Durio zibethinus HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 76.5
Thhalv10016520m.g Eutrema salsugineum HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 78.4
Nn7g36317 Nelumbo nucifera HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 76.5
Peaxi162Scf00130g00417 Petunia axillaris HOM05D001499 ORTHO05D001560 5.1e-16 87.8 51 76.5
Dinv17969 Davidia involucrata HOM05D001499 ORTHO05D001560 6.7e-16 87.4 51 78.4
Prupe.7G056500 Prunus persica HOM05D001499 ORTHO05D001560 6.7e-16 87.4 51 74.5
Sabra06G0034400 Salix brachista HOM05D001499 ORTHO05D001560 6.7e-16 87.4 51 76.5
PGSC0003DMG402027256 Solanum tuberosum HOM05D001499 ORTHO05D001560 6.7e-16 87.4 51 76.5
Atru.chr1.1126 Acer truncatum HOM05D001499 ORTHO05D001560 8.8e-16 87.0 51 76.5
Actinidia39215 Actinidia chinensis HOM05D001499 ORTHO05D001560 8.8e-16 87.0 89 51.7
arahy.Tifrunner.gnm1.ann1.GI5ZH0 Arachis hypogaea HOM05D001499 ORTHO05D001560 8.8e-16 87.0 51 76.5
arahy.Tifrunner.gnm1.ann1.K81J42 Arachis hypogaea HOM05D001499 ORTHO05D001560 8.8e-16 87.0 51 76.5
BcaC02g12788 Brassica carinata HOM05D001499 ORTHO05D001560 1.1e-15 86.7 51 76.5
A05p02410 Brassica napus HOM05D001499 ORTHO05D001560 1.1e-15 86.7 51 76.5
C04p02860 Brassica napus HOM05D001499 ORTHO05D001560 1.1e-15 86.7 51 76.5
BolC4t21926H Brassica oleracea HOM05D001499 ORTHO05D001560 1.1e-15 86.7 51 76.5
BraA05t19235Z Brassica rapa HOM05D001499 ORTHO05D001560 1.1e-15 86.7 51 76.5
ECA248G2226 Erigeron canadensis HOM05D001499 ORTHO05D001560 1.1e-15 86.7 51 76.5
Manes.09G020100 Manihot esculenta HOM05D001499 ORTHO05D001560 1.1e-15 86.7 51 76.5
Sp4g23920 Schrenkiella parvula HOM05D001499 ORTHO05D001560 1.1e-15 86.7 51 76.5
CARHR136760 Cardamine hirsuta HOM05D001499 ORTHO05D001560 2.0e-15 85.9 51 76.5
Ciclev10004686m.g Citrus clementina HOM05D001499 ORTHO05D001560 2.0e-15 85.9 51 74.5
ATR0320G039 Amborella trichopoda HOM05D001499 ORTHO05D001560 2.6e-15 85.5 89 47.2
CANSAT80G2713 Cannabis sativa HOM05D001499 ORTHO05D001560 2.6e-15 85.5 51 76.5
THA.LOC104802064 Tarenaya hassleriana HOM05D001499 ORTHO05D001560 2.6e-15 85.5 51 74.5
CiPaw.10G034300 Carya illinoinensis HOM05D001499 ORTHO05D001560 5.7e-15 84.3 51 76.5
Rhsim03G0027400 Rhododendron simsii HOM05D001499 ORTHO05D001560 5.7e-15 84.3 51 76.5
Zm00001eb329630 Zea mays HOM05D001499 ORTHO05D001560 7.4e-15 84.0 89 48.3
CsaV3_4G011840 Cucumis sativus L. HOM05D001499 ORTHO05D001560 9.7e-15 83.6 52 75.0
ECA236G5056 Erigeron canadensis HOM05D001499 ORTHO05D001560 1.3e-14 83.2 50 76.0
AagrBONN_evm.TU.Sc2ySwM_344.1124 Anthoceros agrestis HOM05D001499 ORTHO05D001560 1.7e-14 82.8 45 82.2
MELO3C023105.2 Cucumis melo HOM05D001499 ORTHO05D001560 2.2e-14 82.4 52 73.1
SalBow6G6755 Salvia bowleyana HOM05D001499 ORTHO05D001560 2.2e-14 82.4 64 65.6
TWI77G0056 Tripterygium wilfordii HOM05D001499 ORTHO05D001560 2.2e-14 82.4 51 74.5
MD00G1191800 Malus domestica HOM05D001499 ORTHO05D001560 2.8e-14 82.0 51 72.5
DCAR_020497 Daucus carota HOM05D001499 ORTHO05D001560 4.8e-14 81.3 109 45.0
SMO365G0084 Selaginella moellendorffii HOM05D001499 ORTHO05D001560 1.4e-13 79.7 51 68.6
HPP92_025058 Vanilla planifolia HOM05D001499 ORTHO05D001560 1.4e-13 79.7 89 44.9
Actinidia17233 Actinidia chinensis HOM05D000141 ORTHO05D000780 3.1e-13 78.6 52 69.2
Pp3c23_21190 Physcomitrium patens HOM05D001499 ORTHO05D001560 1.6e-12 76.3 50 66.0
Pp3c20_5530 Physcomitrium patens HOM05D001499 ORTHO05D001560 3.5e-12 75.1 50 68.0
Lsat_1_v5_gn_8_81141 Lactuca sativa HOM05D001499 ORTHO05D001560 4.5e-12 74.7 50 68.0
THA.LOC104824434 Tarenaya hassleriana HOM05D001499 ORTHO05D001560 4.5e-12 74.7 52 69.2
Psat5g197880 Pisum sativum HOM05D001499 ORTHO05D001560 7.7e-12 73.9 53 64.2
Psat2g159920 Pisum sativum HOM05D001499 ORTHO05D001560 1.0e-11 73.6 45 71.1
Psat5g198000 Pisum sativum HOM05D001499 ORTHO05D016851 1.0e-11 73.6 45 71.1
Mapoly0129s0051 Marchantia polymorpha HOM05D001499 ORTHO05D001560 1.7e-11 72.8 52 67.3
CBR_g49843 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-11 72.4 51 66.7
CSS0026952 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 3.8e-11 71.6 36 88.9
CSS0034261 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 3.8e-11 71.6 36 88.9
QL07p001252 Quercus lobata HOM05D001499 ORTHO05D001560 1.9e-10 69.3 36 83.3
MD12G1076800 Malus domestica HOM05D001499 ORTHO05D001560 2.5e-10 68.9 46 67.4
SGA_v2.0_scaffold48G18077 Striga asiatica HOM05D001499 ORTHO05D016851 7.2e-10 67.4 36 80.6
CSS0004775 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 2.3e-08 62.4 39 74.4
CSS0010695 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 3.0e-08 62.0 36 80.6
CSS0016166 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 5.2e-08 61.2 36 75.0
Cre01.g054150 Chlamydomonas reinhardtii HOM05D001499 ORTHO05D001560 1.3e-06 56.6 34 73.5
SGA_v2.0_scaffold273G46435 Striga asiatica HOM05D001499 ORTHO05D001560 2.2e-06 55.8 51 58.8


User provided reference genes

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