Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.2e-113 411.4 207 100.0
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 9.3e-89 330.5 170 95.9
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 6.3e-85 317.8 169 92.3
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 8.2e-85 317.4 170 91.2
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 8.2e-85 317.4 170 91.2
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 1.4e-84 316.6 170 91.8
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 6.9e-84 314.3 170 91.2
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 6.9e-84 314.3 173 90.2
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 6.9e-84 314.3 168 91.7
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 9.1e-84 313.9 170 90.0
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.2e-83 313.5 169 89.9
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 1.5e-83 313.2 169 89.9
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.0e-83 312.8 170 90.0
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 2.0e-83 312.8 170 89.4
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 2.6e-83 312.4 169 89.9
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.6e-83 312.4 167 91.0
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.4e-83 312.0 169 88.8
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.4e-83 312.0 170 90.6
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 7.7e-83 310.8 170 89.4
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 7.7e-83 310.8 170 90.0
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.0e-82 310.5 170 89.4
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.0e-82 310.5 170 89.4
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.0e-82 310.5 170 90.0
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 1.3e-82 310.1 170 89.4
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.0e-82 308.1 170 88.2
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 8.5e-82 307.4 170 88.2
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 8.5e-82 307.4 170 88.2
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.9e-81 306.2 170 90.0
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.9e-81 306.2 169 86.4
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.5e-81 305.8 170 87.6
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 4.2e-81 305.1 170 87.6
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 5.5e-81 304.7 171 86.5
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 7.2e-81 304.3 169 86.4
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 7.2e-81 304.3 170 87.1
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 7.2e-81 304.3 172 85.5
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 9.4e-81 303.9 170 87.1
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.2e-80 303.5 171 86.0
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 2.1e-80 302.8 170 86.5
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 2.1e-80 302.8 170 87.1
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.1e-80 302.8 170 86.5
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.1e-80 302.8 170 88.2
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.7e-80 302.4 170 85.9
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 3.6e-80 302.0 170 87.1
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 3.6e-80 302.0 191 80.1
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.4e-79 300.1 170 84.7
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 1.4e-79 300.1 170 85.9
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 1.8e-79 299.7 170 85.3
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 2.3e-79 299.3 168 86.3
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.3e-79 299.3 170 87.6
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.3e-79 299.3 167 86.2
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.3e-79 299.3 167 86.2
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 3.0e-79 298.9 171 87.7
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 3.9e-79 298.5 170 85.3
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.9e-79 298.5 169 85.8
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 3.9e-79 298.5 170 85.9
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 3.9e-79 298.5 170 85.9
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 5.1e-79 298.1 171 84.2
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.5e-78 296.6 203 76.4
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 3.3e-78 295.4 170 85.3
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 3.3e-78 295.4 171 86.5
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 4.4e-78 295.0 170 84.1
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 4.4e-78 295.0 186 80.1
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 5.7e-78 294.7 167 87.4
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 5.7e-78 294.7 170 84.1
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 7.4e-78 294.3 170 85.3
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 9.7e-78 293.9 180 81.7
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.7e-77 293.1 170 81.8
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.7e-77 293.1 170 84.1
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.7e-77 293.1 171 87.1
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 2.2e-77 292.7 166 84.9
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 2.2e-77 292.7 170 83.5
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 2.2e-77 292.7 170 81.8
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 2.8e-77 292.4 171 86.0
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 2.8e-77 292.4 169 84.6
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 4.8e-77 291.6 170 82.4
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 4.8e-77 291.6 180 81.1
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 4.8e-77 291.6 180 81.1
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 4.8e-77 291.6 169 85.8
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 4.8e-77 291.6 180 80.6
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 4.8e-77 291.6 170 83.5
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 6.3e-77 291.2 170 83.5
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 6.3e-77 291.2 172 83.1
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 1.1e-76 290.4 170 81.8
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.1e-76 290.4 163 85.9
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 2.4e-76 289.3 180 80.6
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 2.4e-76 289.3 180 80.6
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 2.4e-76 289.3 180 78.9
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 2.4e-76 289.3 163 85.3
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 2.4e-76 289.3 159 86.8
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 2.4e-76 289.3 171 85.4
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 3.1e-76 288.9 171 84.8
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 3.1e-76 288.9 172 81.4
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 4.1e-76 288.5 159 86.8
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 4.1e-76 288.5 171 86.0
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 9.1e-76 287.3 175 81.7
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.2e-75 287.0 171 83.6
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.5e-75 286.6 171 82.5
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 3.4e-75 285.4 168 81.5
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 4.5e-75 285.0 181 79.0
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 4.5e-75 285.0 181 79.0
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 4.5e-75 285.0 181 79.0
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 4.5e-75 285.0 160 85.6
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.9e-75 284.6 190 77.9
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 7.7e-75 284.3 169 80.5
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.3e-74 283.5 183 78.7
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 1.3e-74 283.5 181 78.5
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.3e-74 283.5 171 81.9
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.9e-74 282.3 272 58.8
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 3.8e-74 282.0 172 81.4
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 6.5e-74 281.2 170 81.2
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 6.5e-74 281.2 168 81.5
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 2.5e-73 279.3 170 79.4
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 2.5e-73 279.3 170 81.2
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 7.2e-73 277.7 149 90.6
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 7.2e-73 277.7 170 80.0
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.2e-72 276.9 170 77.1
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 8.0e-72 274.2 171 81.3
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 1.0e-71 273.9 172 80.8
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 1.0e-71 273.9 172 80.8
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 5.2e-71 271.6 170 80.6
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.5e-70 270.0 169 79.9
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.0e-70 269.6 169 79.9
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 5.7e-70 268.1 168 79.2
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.3e-69 266.9 169 78.1
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.2e-69 266.2 170 78.2
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 4.2e-65 251.9 147 84.4
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 9.4e-65 250.8 166 72.9
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.2e-62 243.8 170 70.6
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 3.3e-62 242.3 170 70.0
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 3.3e-62 242.3 169 69.2
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 5.0e-58 228.4 165 65.5
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.5e-57 226.1 169 71.6
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 3.2e-57 225.7 164 66.5
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.5e-54 216.9 167 62.9
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 5.2e-47 191.8 128 75.0
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 3.4e-46 189.1 170 61.8
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 7.5e-46 188.0 157 59.2
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.3e-45 187.2 99 92.9
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.0e-39 165.6 101 83.2
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.6e-35 153.7 115 68.7
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.8e-31 140.2 80 83.8
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.1e-28 131.0 173 40.5
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.2e-27 127.5 156 41.7
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 3.9e-26 122.5 75 80.0
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.9e-26 122.5 75 80.0
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.1e-24 116.7 57 96.5
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.2e-22 110.9 100 58.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.0e-22 110.2 54 96.3
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.7e-21 107.1 58 86.2
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 8.3e-21 104.8 51 96.1
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 1.0e-18 97.8 55 81.8
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 1.5e-17 94.0 165 35.2
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 1.9e-17 93.6 157 35.7
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 2.5e-17 93.2 62 75.8
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 4.4e-14 82.4 100 46.0
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 4.6e-11 72.4 88 47.7
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 6.0e-11 72.0 45 73.3
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 6.0e-11 72.0 37 89.2
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 7.8e-11 71.6 51 68.6
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 6.6e-10 68.6 55 63.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 1.5e-09 67.4 38 84.2
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 1.2e-08 64.3 50 64.0
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.6e-08 63.9 42 73.8
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-07 61.2 42 66.7
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 9.0e-07 58.2 38 73.7
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 9.0e-07 58.2 38 73.7


User provided reference genes

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