Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 0.0e+00 1479.9 781 100.0
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 0.0e+00 1279.6 703 97.7
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 1.9e-219 766.5 711 61.5
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 3.1e-217 759.2 697 62.6
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 5.3e-209 731.9 698 60.0
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 1.6e-205 720.3 713 57.1
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 5.1e-204 715.3 694 58.8
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 1.9e-203 713.4 709 58.1
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 4.6e-173 612.5 714 50.6
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 9.1e-153 545.0 713 48.2
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 3.2e-150 536.6 690 48.8
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 1.4e-140 504.6 696 45.1
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 8.3e-138 495.4 697 45.3
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 4.5e-136 489.6 711 45.7
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 7.3e-134 482.3 682 46.2
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 8.0e-133 478.8 689 45.7
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.3e-130 471.5 714 44.1
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 8.3e-130 468.8 840 37.7
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 1.1e-129 468.4 719 43.5
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 5.9e-128 462.6 680 44.4
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 5.9e-128 462.6 713 43.6
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 4.7e-125 453.0 872 36.7
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 6.0e-120 436.0 698 42.7
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 2.3e-119 434.1 738 40.7
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 3.9e-119 433.3 714 42.0
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 6.6e-119 432.6 713 41.0
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 1.1e-118 431.8 719 41.4
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 3.3e-118 430.3 716 42.0
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 9.5e-118 428.7 712 42.4
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 2.3e-116 424.1 698 41.5
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 6.8e-116 422.5 717 41.3
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 2.4e-113 414.1 737 39.8
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 4.7e-109 399.8 712 40.4
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 2.3e-108 397.5 719 39.9
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 8.9e-108 395.6 726 39.1
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 2.6e-107 394.0 677 41.4
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 5.4e-105 386.3 703 38.3
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 7.1e-105 386.0 708 38.0
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 7.1e-105 386.0 722 39.5
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 1.6e-104 384.8 701 38.7
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 6.0e-104 382.9 703 38.1
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 3.9e-103 380.2 712 38.1
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 5.1e-103 379.8 714 38.2
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 1.5e-102 378.3 728 38.5
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 1.9e-102 377.9 724 37.7
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 9.6e-102 375.6 689 38.0
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 2.4e-100 370.9 714 40.5
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 8.9e-100 369.0 712 37.8
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 3.4e-99 367.1 712 37.9
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 3.4e-99 367.1 697 37.7
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 9.3e-97 359.0 721 38.1
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 1.6e-96 358.2 721 37.9
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 2.1e-96 357.8 686 39.5
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 8.7e-95 352.4 708 37.4
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 1.1e-94 352.1 685 38.4
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 1.9e-94 351.3 690 37.8
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 2.5e-94 350.9 707 36.9
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 9.6e-94 349.0 703 38.3
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 8.1e-93 345.9 704 37.2
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 1.2e-91 342.0 678 36.6
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.5e-91 341.7 687 37.1
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 9.9e-91 339.0 685 37.2
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 9.9e-91 339.0 685 37.4
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.7e-90 338.2 691 37.3
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 1.1e-89 335.5 709 35.8
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 1.4e-89 335.1 694 36.3
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 1.6e-88 331.6 705 35.0
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 1.0e-87 328.9 682 36.7
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 3.0e-87 327.4 685 36.2
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.1e-84 317.4 673 36.7
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 2.2e-82 311.2 687 35.8
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 2.3e-79 301.2 696 36.2
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 1.3e-77 295.4 704 35.8
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 1.8e-76 291.6 718 34.8
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 4.0e-76 290.4 664 34.8
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 1.5e-75 288.5 680 34.6
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 6.5e-74 283.1 708 35.0
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 1.4e-73 282.0 688 35.3
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 1.4e-73 282.0 710 33.7
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 1.9e-73 281.6 698 38.0
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 2.5e-73 281.2 712 34.3
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 5.5e-73 280.0 692 36.3
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 1.3e-71 275.4 732 35.0
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 5.1e-71 273.5 676 34.8
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 8.2e-69 266.2 535 37.8
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 1.4e-68 265.4 717 34.0
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 1.0e-66 259.2 663 33.8
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 8.5e-66 256.1 700 31.9
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 2.5e-65 254.6 640 34.5
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 5.5e-65 253.4 743 31.9
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 7.2e-65 253.1 640 32.7
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 3.6e-64 250.8 746 32.2
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 6.7e-63 246.5 673 30.6
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 1.1e-62 245.7 737 29.2
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 2.4e-60 238.0 725 31.7
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 2.0e-59 235.0 167 71.9
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.3e-58 232.3 738 30.5
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 1.1e-54 219.2 636 31.8
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 1.5e-54 218.8 741 30.2
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 2.6e-54 218.0 736 29.6
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 3.7e-53 214.2 664 31.5
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 6.3e-53 213.4 662 28.7
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 8.2e-53 213.0 718 27.2
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 6.9e-52 209.9 752 29.5
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 9.1e-52 209.5 658 30.9
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 1.2e-51 209.1 748 29.8
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 3.8e-50 204.1 756 28.4
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 1.6e-48 198.7 731 28.2
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 2.3e-47 194.9 754 29.0
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 1.1e-46 192.6 678 31.0
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 1.7e-45 188.7 744 28.8
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 1.7e-45 188.7 666 30.5
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 1.7e-45 188.7 744 28.8
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 2.8e-45 188.0 312 40.7
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 1.8e-44 185.3 680 30.9
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 2.4e-44 184.9 695 28.1
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 5.3e-44 183.7 672 30.7
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 9.1e-44 183.0 129 68.2
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 1.6e-43 182.2 307 39.4
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 1.6e-43 182.2 680 31.2
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 2.0e-43 181.8 744 28.4
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 2.0e-43 181.8 744 28.4
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 3.3e-38 164.5 290 40.0
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 1.7e-37 162.2 664 28.5
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 2.9e-34 151.4 209 46.9
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 2.4e-28 131.7 519 29.3
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 3.5e-27 127.9 602 26.9
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 3.8e-26 124.4 725 24.8
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 8.3e-21 106.7 223 35.0
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 1.1e-20 106.3 286 31.8
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 2.3e-18 98.6 97 53.6
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 8.6e-18 96.7 223 32.7
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 7.3e-17 93.6 230 34.8
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 1.9e-09 68.9 120 37.5
Zm00001eb243360 Zea mays HOM05D019841 ORTHO05D037008 1.8e-07 62.4 143 32.9
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 6.8e-07 60.5 802 23.4
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 6.8e-07 60.5 89 41.6


User provided reference genes

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