Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024990 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D000703 8.7e-69 263.5 128 100.0
vmacro14779 Vaccinium macrocarpon HOM05D000116 ORTHO05D000703 8.8e-29 130.6 120 63.3
Dinv19251 Davidia involucrata HOM05D018657 ORTHO05D020476 1.1e-28 130.2 124 60.5
Hma1.2p1_1393F.1_g280300 Hydrangea macrophylla HOM05D000116 ORTHO05D000703 1.1e-28 130.2 90 72.2
Actinidia30109 Actinidia chinensis HOM05D000116 ORTHO05D000703 1.7e-27 126.3 134 56.7
Dinv43042 Davidia involucrata HOM05D000116 ORTHO05D000703 1.8e-26 122.9 73 82.2
Lj1A77T23 Lonicera japonica HOM05D000116 ORTHO05D000703 2.4e-26 122.5 122 59.0
Actinidia37566 Actinidia chinensis HOM05D000116 ORTHO05D000703 4.1e-26 121.7 123 60.2
TAR362G0338 Trochodendron aralioides HOM05D000116 ORTHO05D000703 1.7e-24 116.3 78 73.1
Lsat_1_v5_gn_9_11960 Lactuca sativa HOM05D000116 ORTHO05D000703 2.9e-24 115.5 119 58.0
PGSC0003DMG400020080 Solanum tuberosum HOM05D000116 ORTHO05D000703 2.9e-24 115.5 82 72.0
Solyc06g083690.3 Solanum lycopersicum HOM05D000116 ORTHO05D000703 1.1e-23 113.6 67 82.1
Sopen06g035110 Solanum pennellii HOM05D000116 ORTHO05D000703 1.1e-23 113.6 77 75.3
Nn3g19845 Nelumbo nucifera HOM05D000116 ORTHO05D000703 2.5e-23 112.5 71 73.2
Nitab4.5_0004777g0020 Nicotiana tabacum HOM05D000116 ORTHO05D000703 7.2e-23 110.9 107 57.0
CAN.G771.47 Capsicum annuum HOM05D000116 ORTHO05D000703 9.4e-23 110.5 127 54.3
Gohir.D07G209100 Gossypium hirsutum HOM05D000116 ORTHO05D000703 9.4e-23 110.5 123 55.3
Atru.chr5.1917 Acer truncatum HOM05D000116 ORTHO05D000703 1.6e-22 109.8 123 52.0
Prupe.8G210900 Prunus persica HOM05D000116 ORTHO05D000703 1.6e-22 109.8 73 69.9
QL09p043177 Quercus lobata HOM05D000116 ORTHO05D000703 1.6e-22 109.8 115 56.5
Gohir.A07G202900 Gossypium hirsutum HOM05D000116 ORTHO05D000703 2.1e-22 109.4 123 55.3
Peaxi162Scf00517g00116 Petunia axillaris HOM05D000116 ORTHO05D000703 2.7e-22 109.0 77 75.3
Gorai.001G236100 Gossypium raimondii HOM05D000116 ORTHO05D000703 3.6e-22 108.6 123 54.5
Thecc.01G245800 Theobroma cacao HOM05D000116 ORTHO05D000703 6.1e-22 107.8 126 54.0
RcHm_v2.0_Chr6g0285841 Rosa chinensis HOM05D000116 ORTHO05D000703 1.8e-21 106.3 87 60.9
HanXRQChr10g0280311 Helianthus annuus HOM05D000116 ORTHO05D000703 3.0e-21 105.5 102 57.8
Duzib138G0356 Durio zibethinus HOM05D000116 ORTHO05D000703 4.0e-21 105.1 124 53.2
Oeu015444.1 Olea europaea HOM05D000116 ORTHO05D000703 4.0e-21 105.1 60 86.7
Oeu015445.1 Olea europaea HOM05D000116 ORTHO05D000703 4.0e-21 105.1 60 86.7
Ciclev10022530m.g Citrus clementina HOM05D000116 ORTHO05D000703 5.2e-21 104.8 65 75.4
COL.COLO4_05636 Corchorus olitorius HOM05D000116 ORTHO05D000703 5.2e-21 104.8 92 58.7
Oeu052099.1 Olea europaea HOM05D000116 ORTHO05D000703 5.2e-21 104.8 63 82.5
Cfa002508 Carpinus fangiana HOM05D000116 ORTHO05D000703 6.7e-21 104.4 126 51.6
MBI07_g08922_MAGBIO Magnolia biondii HOM05D000116 ORTHO05D000703 6.7e-21 104.4 75 68.0
Nitab4.5_0001557g0050 Nicotiana tabacum HOM05D000116 ORTHO05D000703 8.8e-21 104.0 107 56.1
PSO170G6675 Papaver somniferum HOM05D000116 ORTHO05D000703 8.8e-21 104.0 58 81.0
PSO764G0350 Papaver somniferum HOM05D000116 ORTHO05D000703 8.8e-21 104.0 58 81.0
MD10G1172500 Malus domestica HOM05D000116 ORTHO05D000703 1.1e-20 103.6 89 62.9
Duzib211G0298 Durio zibethinus HOM05D000116 ORTHO05D000703 1.5e-20 103.2 122 49.2
Gorai.007G151300 Gossypium raimondii HOM05D000116 ORTHO05D000703 1.5e-20 103.2 92 58.7
MSTRG.12508 Avicennia marina HOM05D000116 ORTHO05D000703 2.0e-20 102.8 66 77.3
Aqoxy5G00079 Aquilegia oxysepala HOM05D000116 ORTHO05D000703 2.6e-20 102.4 58 79.3
HanXRQChr15g0468121 Helianthus annuus HOM05D000116 ORTHO05D000703 3.3e-20 102.1 116 50.9
Manes.13G042100 Manihot esculenta HOM05D000116 ORTHO05D000703 3.3e-20 102.1 61 72.1
CiPaw.03G273200 Carya illinoinensis HOM05D000116 ORTHO05D000703 4.4e-20 101.7 55 85.5
CDE02G0360 Ceratophyllum demersum HOM05D000116 ORTHO05D000703 4.4e-20 101.7 60 75.0
Sabra02G0193200 Salix brachista HOM05D000116 ORTHO05D000703 5.7e-20 101.3 88 56.8
ATR0787G009 Amborella trichopoda HOM05D000116 ORTHO05D000703 7.4e-20 100.9 59 74.6
TWI75G0283 Tripterygium wilfordii HOM05D000116 ORTHO05D000703 7.4e-20 100.9 93 60.2
Ah.08g213860 Amaranthus hybridus HOM05D000116 ORTHO05D000703 9.7e-20 100.5 121 54.5
MD05G1184700 Malus domestica HOM05D000116 ORTHO05D000703 9.7e-20 100.5 76 67.1
Phvul.007G155300 Phaseolus vulgaris HOM05D000116 ORTHO05D000703 1.3e-19 100.1 102 55.9
TWI18G0206 Tripterygium wilfordii HOM05D000116 ORTHO05D000703 1.3e-19 100.1 76 69.7
Sc17g0002620 Simmondsia chinensis HOM05D000116 ORTHO05D000703 1.7e-19 99.8 112 50.0
Gohir.A11G134800 Gossypium hirsutum HOM05D000116 ORTHO05D000703 2.2e-19 99.4 92 54.3
PGR083G1033 Punica granatum HOM05D000116 ORTHO05D000703 2.8e-19 99.0 71 69.0
EL10Ac7g17745 Beta vulgaris HOM05D000116 ORTHO05D000703 3.7e-19 98.6 130 49.2
Potri.002G254100 Populus trichocarpa HOM05D000116 ORTHO05D000703 3.7e-19 98.6 79 62.0
THA.LOC104820063 Tarenaya hassleriana HOM05D000116 ORTHO05D000703 3.7e-19 98.6 126 51.6
GSVIVG01028475001 Vitis vinifera HOM05D000116 ORTHO05D000703 3.7e-19 98.6 55 81.8
CDE09G0247 Ceratophyllum demersum HOM05D000116 ORTHO05D000703 6.3e-19 97.8 60 73.3
FvH4_2g20100 Fragaria vesca HOM05D000116 ORTHO05D000703 6.3e-19 97.8 116 50.0
FAN15G3662 Fragaria x ananassa HOM05D000116 ORTHO05D000703 6.3e-19 97.8 116 50.0
FAN24G0609 Fragaria x ananassa HOM05D000116 ORTHO05D000703 6.3e-19 97.8 116 50.0
ECA247G3407 Erigeron canadensis HOM05D000335 ORTHO05D000459 1.1e-18 97.1 56 78.6
CANSAT01G2235 Cannabis sativa HOM05D000116 ORTHO05D000703 1.4e-18 96.7 105 50.5
Haze_24733 Corylus avellana HOM05D000116 ORTHO05D000703 1.4e-18 96.7 121 50.4
FAN27G3090 Fragaria x ananassa HOM05D000116 ORTHO05D000703 1.4e-18 96.7 78 64.1
VMungo0720G1403 Vigna mungo HOM05D000116 ORTHO05D000703 1.4e-18 96.7 54 81.5
Gohir.D11G141000 Gossypium hirsutum HOM05D000116 ORTHO05D000703 1.8e-18 96.3 91 53.8
Lj5g0007779 Lotus japonicus HOM05D000116 ORTHO05D000703 1.8e-18 96.3 79 63.3
MSTRG.21449 Avicennia marina HOM05D000116 ORTHO05D000703 2.4e-18 95.9 69 68.1
Eucgr.H00830 Eucalyptus grandis HOM05D000116 ORTHO05D000703 2.4e-18 95.9 52 84.6
SGA_v2.0_scaffold3G01597 Striga asiatica HOM05D000116 ORTHO05D000703 2.4e-18 95.9 54 81.5
Thhalv10002105m.g Eutrema salsugineum HOM05D000116 ORTHO05D000703 4.1e-18 95.1 78 61.5
MELO3C022405.2 Cucumis melo HOM05D000116 ORTHO05D000703 5.3e-18 94.7 52 84.6
Hund05503 Selenicereus undatus HOM05D000116 ORTHO05D000703 5.3e-18 94.7 51 88.2
DCAR_000549 Daucus carota HOM05D000116 ORTHO05D000703 7.0e-18 94.4 81 61.7
Hund18338 Selenicereus undatus HOM05D000116 ORTHO05D000703 7.0e-18 94.4 52 84.6
ClCG06G001290 Citrullus lanatus HOM05D000116 ORTHO05D000703 9.1e-18 94.0 128 49.2
Migut.D00496 Erythranthe guttata HOM05D000116 ORTHO05D000703 9.1e-18 94.0 124 50.0
Glyma.10G041900 Glycine max HOM05D000116 ORTHO05D000703 9.1e-18 94.0 54 77.8
Glyma.13G128900 Glycine max HOM05D000116 ORTHO05D000703 1.2e-17 93.6 61 68.9
Lalb_Chr06g0170891 Lupinus albus HOM05D000116 ORTHO05D000703 1.2e-17 93.6 59 71.2
Zm00001eb038620 Zea mays HOM05D000116 ORTHO05D000703 1.2e-17 93.6 53 79.2
BcaNung07173 Brassica carinata HOM05D000116 ORTHO05D000703 2.0e-17 92.8 63 71.4
Carub.0007s1191 Capsella rubella HOM05D000116 ORTHO05D000703 2.0e-17 92.8 64 71.9
Cpa.g.sc87.73 Carica papaya HOM05D000116 ORTHO05D000703 2.0e-17 92.8 59 76.3
DCAR_000548 Daucus carota HOM05D000116 ORTHO05D000703 2.6e-17 92.4 78 62.8
C07p56400 Brassica napus HOM05D000116 ORTHO05D000703 3.5e-17 92.0 56 75.0
CARHR236520 Cardamine hirsuta HOM05D000116 ORTHO05D000703 3.5e-17 92.0 56 71.4
Nn1g03065 Nelumbo nucifera HOM05D000116 ORTHO05D000703 3.5e-17 92.0 76 61.8
TPR.G26516 Trifolium pratense HOM05D000116 ORTHO05D000703 4.5e-17 91.7 54 77.8
Sp3g33500 Schrenkiella parvula HOM05D000116 ORTHO05D000703 5.9e-17 91.3 62 72.6
Zm00001eb175620 Zea mays HOM05D000116 ORTHO05D000703 5.9e-17 91.3 54 74.1
A03p58380 Brassica napus HOM05D000116 ORTHO05D000703 7.7e-17 90.9 102 49.0
BolC7t46120H Brassica oleracea HOM05D003036 ORTHO05D009331 7.7e-17 90.9 56 73.2
BraA03t14900Z Brassica rapa HOM05D000116 ORTHO05D000703 7.7e-17 90.9 102 49.0
CsaV3_6G007220 Cucumis sativus L. HOM05D000116 ORTHO05D000703 7.7e-17 90.9 51 82.4
Medtr1g069255 Medicago truncatula HOM05D000116 ORTHO05D000703 7.7e-17 90.9 52 76.9
Sp7g26740 Schrenkiella parvula HOM05D000116 ORTHO05D000703 7.7e-17 90.9 65 69.2
A08p19940 Brassica napus HOM05D000116 ORTHO05D000703 1.0e-16 90.5 56 75.0
BraA08t33951Z Brassica rapa HOM05D000116 ORTHO05D000703 1.0e-16 90.5 56 75.0
Aa31LG8G17260 Aethionema arabicum HOM05D000116 ORTHO05D000703 1.3e-16 90.1 65 67.7
AT4G28730 Arabidopsis thaliana HOM05D000116 ORTHO05D000703 1.7e-16 89.7 52 73.1
Thhalv10026359m.g Eutrema salsugineum HOM05D000116 ORTHO05D000703 1.7e-16 89.7 67 65.7
THA.LOC104814543 Tarenaya hassleriana HOM05D000116 ORTHO05D000703 1.7e-16 89.7 54 79.6
AL7G23770 Arabidopsis lyrata HOM05D000116 ORTHO05D000703 2.2e-16 89.4 51 78.4
arahy.Tifrunner.gnm1.ann1.9CZI5M Arachis hypogaea HOM05D000116 ORTHO05D000703 2.2e-16 89.4 51 76.5
arahy.Tifrunner.gnm1.ann1.Z7H12U Arachis hypogaea HOM05D000116 ORTHO05D000703 2.2e-16 89.4 51 76.5
SalBow4G1071 Salvia bowleyana HOM05D000116 ORTHO05D000703 2.2e-16 89.4 81 55.6
BcaC07g38357 Brassica carinata HOM05D000116 ORTHO05D000703 2.9e-16 89.0 67 65.7
C08p11050 Brassica napus HOM05D000116 ORTHO05D000703 2.9e-16 89.0 67 65.7
unitig_22.g6314 Utricularia gibba HOM05D000116 ORTHO05D000703 2.9e-16 89.0 66 65.2
AL3G47820 Arabidopsis lyrata HOM05D000116 ORTHO05D000703 3.8e-16 88.6 61 70.5
BcaNung01369 Brassica carinata HOM05D000116 ORTHO05D000703 3.8e-16 88.6 62 67.7
C01p10760 Brassica napus HOM05D000116 ORTHO05D000703 3.8e-16 88.6 62 67.7
BolC1t01035H Brassica oleracea HOM05D000116 ORTHO05D000703 3.8e-16 88.6 62 67.7
Carub.0003s3460 Capsella rubella HOM05D000116 ORTHO05D000703 3.8e-16 88.6 61 70.5
BolC8t48774H Brassica oleracea HOM05D000116 ORTHO05D000703 5.0e-16 88.2 52 76.9
AT2G20270 Arabidopsis thaliana HOM05D000116 ORTHO05D000703 8.5e-16 87.4 57 70.2
BcaC06g32607 Brassica carinata HOM05D000116 ORTHO05D000703 8.5e-16 87.4 51 76.5
BraA01t00863Z Brassica rapa HOM05D000116 ORTHO05D000703 1.5e-15 86.7 59 69.5
A01p09170 Brassica napus HOM05D000116 ORTHO05D000703 1.9e-15 86.3 59 69.5
A07p00450 Brassica napus HOM05D000116 ORTHO05D000703 1.9e-15 86.3 61 70.5
Sed0013499 Sechium edule HOM05D000116 ORTHO05D000703 1.9e-15 86.3 51 76.5
Aa31LG2G21640 Aethionema arabicum HOM05D000116 ORTHO05D000703 2.5e-15 85.9 53 73.6
BcaB03g16816 Brassica carinata HOM05D000116 ORTHO05D000703 3.2e-15 85.5 66 66.7
BcaC06g36706 Brassica carinata HOM05D000116 ORTHO05D000703 3.2e-15 85.5 61 70.5
C07p00870 Brassica napus HOM05D000116 ORTHO05D000703 3.2e-15 85.5 61 70.5
Migut.N02241 Erythranthe guttata HOM05D000116 ORTHO05D000703 5.5e-15 84.7 68 64.7
Glyma.06G269000 Glycine max HOM05D000116 ORTHO05D000703 5.5e-15 84.7 106 50.9
SGA_v2.0_scaffold1G00685 Striga asiatica HOM05D000116 ORTHO05D000703 5.5e-15 84.7 59 64.4
BolC7t40526H Brassica oleracea HOM05D000116 ORTHO05D000703 7.2e-15 84.3 58 72.4
Ca_09630_v3 Cicer arietinum L. HOM05D000116 ORTHO05D000703 2.7e-14 82.4 66 60.6
BraA07t27836Z Brassica rapa HOM05D000116 ORTHO05D000703 1.8e-13 79.7 59 67.8
CARHR110750 Cardamine hirsuta HOM05D000116 ORTHO05D000703 4.0e-13 78.6 59 64.4
Oeu039644.1 Olea europaea HOM05D000116 ORTHO05D000703 2.0e-12 76.3 52 71.2
Cc01_g17520 Coffea canephora HOM05D000116 ORTHO05D000703 5.7e-12 74.7 44 77.3
SEGI_33327 Sequoiadendron giganteum HOM05D000116 ORTHO05D000703 1.7e-11 73.2 58 55.2
AagrBONN_evm.TU.Sc2ySwM_228.4790 Anthoceros agrestis HOM05D000116 ORTHO05D000703 1.3e-08 63.5 67 46.3
SMO146G0263 Selaginella moellendorffii HOM05D000116 ORTHO05D000703 8.5e-08 60.8 39 64.1
HanXRQChr05g0142181 Helianthus annuus HOM05D000116 ORTHO05D000703 7.2e-07 57.8 55 41.8
Lsat_1_v5_gn_8_68860 Lactuca sativa HOM05D000116 ORTHO05D000703 9.4e-07 57.4 55 43.6
Mapoly0182s0020 Marchantia polymorpha HOM05D000116 ORTHO05D000703 9.4e-07 57.4 41 63.4
Aa31LG1G14170 Aethionema arabicum HOM05D000116 ORTHO05D000703 2.7e-06 55.8 74 39.2
CBR_g50339 Chara braunii HOM05D000116 ORTHO05D000703 3.6e-06 55.5 53 45.3
AUR62027444 Chenopodium quinoa HOM05D000116 ORTHO05D000703 3.6e-06 55.5 68 38.2
AUR62031257 Chenopodium quinoa HOM05D000116 ORTHO05D000703 4.7e-06 55.1 68 38.2
CsaV3_1G032060 Cucumis sativus L. HOM05D000116 ORTHO05D000703 6.1e-06 54.7 68 41.2
Pp3c18_5670 Physcomitrium patens HOM05D000116 ORTHO05D000703 6.1e-06 54.7 45 46.7
Aqoxy7G02536 Aquilegia oxysepala HOM05D000116 ORTHO05D000703 8.0e-06 54.3 87 32.2
AL6G32030 Arabidopsis lyrata HOM05D000116 ORTHO05D000703 8.0e-06 54.3 60 41.7
PGR044G0943 Punica granatum HOM05D000116 ORTHO05D000703 8.0e-06 54.3 51 45.1


User provided reference genes

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