Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 4.7e-59 231.1 126 100.0
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.8e-54 213.8 122 89.3
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 3.6e-27 125.2 125 59.2
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 1.4e-26 123.2 120 59.2
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 1.2e-25 120.2 129 56.6
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 6.4e-24 114.4 112 58.9
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 6.0e-22 107.8 112 58.9
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 5.1e-21 104.8 111 53.2
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 6.6e-21 104.4 121 52.9
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 4.3e-20 101.7 131 51.1
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 7.3e-20 100.9 114 54.4
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 1.6e-19 99.8 128 46.1
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.1e-19 99.4 111 52.3
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.8e-19 99.0 111 52.3
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 3.6e-19 98.6 107 57.9
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 4.8e-19 98.2 115 52.2
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.1e-18 97.1 114 51.8
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.4e-18 96.7 110 50.9
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.8e-18 96.3 112 52.7
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 2.4e-18 95.9 112 47.3
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 3.1e-18 95.5 117 47.9
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 4.0e-18 95.1 118 48.3
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 5.3e-18 94.7 114 51.8
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 2.0e-17 92.8 112 51.8
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 2.0e-17 92.8 117 46.2
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 2.6e-17 92.4 108 48.1
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 2.6e-17 92.4 119 48.7
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 3.4e-17 92.0 114 50.0
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 3.4e-17 92.0 111 47.7
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 4.4e-17 91.7 111 47.7
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 4.4e-17 91.7 118 47.5
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 5.8e-17 91.3 112 46.4
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 7.6e-17 90.9 117 46.2
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 7.6e-17 90.9 119 48.7
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 7.6e-17 90.9 127 48.8
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 7.6e-17 90.9 114 48.2
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 1.3e-16 90.1 123 46.3
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.7e-16 89.7 107 49.5
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.7e-16 89.7 109 49.5
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.7e-16 89.7 116 46.6
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 2.2e-16 89.4 119 47.9
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 2.9e-16 89.0 114 48.2
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 3.8e-16 88.6 117 46.2
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 4.9e-16 88.2 109 46.8
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 4.9e-16 88.2 114 47.4
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 4.9e-16 88.2 114 49.1
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 1.1e-15 87.0 112 47.3
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.4e-15 86.7 130 44.6
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 1.4e-15 86.7 118 49.2
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 1.4e-15 86.7 117 46.2
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.9e-15 86.3 112 47.3
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 3.2e-15 85.5 125 47.2
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 7.1e-15 84.3 117 48.7
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 7.1e-15 84.3 116 47.4
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.2e-14 83.6 108 43.5
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 1.2e-14 83.6 139 41.0
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 2.1e-14 82.8 117 44.4
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.1e-14 82.8 124 43.5
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 2.1e-14 82.8 119 42.9
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.1e-14 82.8 122 45.1
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 2.7e-14 82.4 113 46.9
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 2.7e-14 82.4 134 44.0
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 4.6e-14 81.6 117 42.7
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 4.6e-14 81.6 117 42.7
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 6.0e-14 81.3 118 40.7
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 6.0e-14 81.3 115 47.0
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 1.0e-13 80.5 118 40.7
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 1.0e-13 80.5 118 40.7
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 1.3e-13 80.1 133 42.9
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 1.3e-13 80.1 120 41.7
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 1.3e-13 80.1 107 43.0
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.3e-13 80.1 114 42.1
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.3e-13 80.1 118 40.7
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 2.3e-13 79.3 134 43.3
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 3.9e-13 78.6 121 40.5
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.9e-13 78.6 117 41.9
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 3.9e-13 78.6 120 41.7
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 3.9e-13 78.6 120 41.7
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 3.9e-13 78.6 120 41.7
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 3.9e-13 78.6 111 45.9
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 5.1e-13 78.2 118 40.7
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 1.1e-12 77.0 106 41.5
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 1.1e-12 77.0 116 41.4
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.9e-12 76.3 35 88.6
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 2.5e-12 75.9 126 44.4
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 3.3e-12 75.5 109 42.2
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.3e-12 75.5 110 41.8
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 5.6e-12 74.7 132 40.9
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 5.6e-12 74.7 145 36.6
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 7.4e-12 74.3 145 42.8
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 7.4e-12 74.3 55 60.0
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 2.1e-11 72.8 35 85.7
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 2.8e-11 72.4 50 66.0
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 4.8e-11 71.6 117 38.5
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 1.1e-10 70.5 107 43.0
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.4e-10 70.1 97 44.3
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.4e-10 70.1 116 41.4
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 2.4e-10 69.3 123 36.6
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 2.4e-10 69.3 35 80.0
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 5.3e-10 68.2 110 39.1
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 5.3e-10 68.2 100 44.0
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 9.0e-10 67.4 97 43.3
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 9.0e-10 67.4 97 43.3
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 9.0e-10 67.4 86 44.2
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 2.6e-09 65.9 122 43.4
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 4.5e-09 65.1 35 80.0
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 4.5e-09 65.1 36 75.0
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 4.5e-09 65.1 36 75.0
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 9.9e-09 63.9 34 79.4
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 2.9e-08 62.4 127 37.8
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.9e-08 62.4 127 37.8
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 4.9e-08 61.6 32 78.1
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 8.4e-08 60.8 109 38.5
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 1.9e-07 59.7 50 56.0
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.2e-07 58.9 134 35.8
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 3.2e-07 58.9 30 80.0
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 3.2e-07 58.9 51 56.9
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 7.1e-07 57.8 31 77.4


User provided reference genes

Program Settings