Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1493.0 731 100.0
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1478.0 731 99.0
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1397.9 731 92.6
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1370.5 732 91.4
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1357.0 773 86.0
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1353.6 732 89.1
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1351.7 732 88.9
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1349.0 778 85.0
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1349.0 778 85.0
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1346.3 732 88.8
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1343.6 734 88.1
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1343.2 734 89.4
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1342.0 732 88.5
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1340.9 732 87.4
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1336.6 732 88.3
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1335.9 732 88.1
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1334.7 732 87.2
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1334.3 733 87.9
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1333.9 732 87.7
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1332.4 732 87.7
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1332.0 732 87.6
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1331.6 734 87.2
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1331.2 746 87.1
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1329.7 733 87.4
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1328.5 724 88.5
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1327.4 732 87.2
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1327.0 732 86.3
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1326.6 732 87.3
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1326.2 732 87.2
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1325.1 732 86.6
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1324.3 732 87.6
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1324.3 732 87.3
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1322.8 732 87.6
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1322.0 734 86.6
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1320.4 732 85.8
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1319.7 733 87.3
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1318.9 730 85.6
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1318.5 732 87.3
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1318.5 732 87.8
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1318.1 732 85.5
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1317.8 732 85.4
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1317.8 730 85.5
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1317.8 730 85.5
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1317.4 734 86.5
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1315.8 733 86.9
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1314.3 732 86.2
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1313.1 734 86.0
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1312.0 733 87.0
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1308.5 732 86.6
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1304.7 733 86.8
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1303.9 733 86.2
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1303.5 735 86.7
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1303.1 782 82.1
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1300.0 732 85.9
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1298.5 735 84.4
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1298.1 733 84.6
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1298.1 775 82.2
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1297.7 732 85.4
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1297.7 749 84.5
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1296.2 733 85.0
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1293.1 732 85.2
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1290.8 697 88.7
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1289.6 732 85.7
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1287.7 732 84.3
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1286.9 732 84.2
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1285.8 732 84.6
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1284.6 734 84.2
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1284.6 734 84.6
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1283.9 734 84.2
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1282.3 732 84.7
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1281.5 733 83.8
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1278.1 734 83.9
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1277.3 732 83.9
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1276.2 732 85.2
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1275.4 733 84.4
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1273.8 732 83.2
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1271.5 727 84.0
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1268.8 732 83.2
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 830 76.9
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1263.4 732 82.7
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1262.7 732 82.9
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1261.9 732 82.5
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1261.9 732 82.9
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1258.0 732 82.8
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1257.3 732 82.8
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1257.3 732 82.7
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1256.5 732 82.9
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1256.1 732 82.8
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1255.4 732 84.8
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1255.0 732 83.1
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1254.6 732 82.8
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1253.4 732 82.5
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1252.3 732 82.5
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1250.3 732 82.1
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1245.0 732 83.5
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1237.2 706 83.4
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1226.1 730 80.4
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1224.9 736 80.4
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1224.2 663 88.1
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1216.1 733 79.1
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1211.8 751 78.7
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1210.7 732 81.4
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1210.3 738 79.9
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 744 79.4
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 744 79.6
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1207.6 743 79.4
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1199.9 735 79.7
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1191.0 659 86.5
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1189.5 667 86.5
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1180.6 723 78.3
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1178.7 741 77.3
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1156.4 733 76.3
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1145.6 616 90.3
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1145.6 616 90.1
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1136.3 699 78.0
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1135.6 707 76.8
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1129.4 734 74.9
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 0.0e+00 1119.8 585 93.3
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1087.4 732 73.6
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1085.5 733 72.2
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 7.5e-311 1070.1 706 74.4
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 2.5e-309 1065.1 751 71.8
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 1.5e-282 976.1 735 65.0
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 2.8e-281 971.8 733 64.0
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.1e-280 969.9 702 69.5
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 9.1e-280 966.8 713 65.1
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.1e-260 902.5 506 87.7
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 8.8e-259 897.1 690 62.5
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.2e-258 896.7 567 77.8
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 2.2e-257 892.5 670 65.1
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.8e-256 889.4 653 65.5
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 7.0e-248 860.9 697 60.1
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 2.9e-233 812.4 502 79.3
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 7.1e-232 807.7 702 57.1
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 1.5e-226 790.0 783 52.7
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 3.9e-222 775.4 417 89.9
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.3e-204 717.2 697 53.2
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.6e-183 647.1 422 74.9
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 6.7e-158 562.0 377 72.4
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 2.7e-154 550.1 303 90.1
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 8.0e-151 538.5 357 74.8
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 3.7e-148 529.6 317 81.4
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.8e-147 527.3 311 83.9
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 9.8e-141 505.0 349 75.9
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.7e-130 470.3 338 69.2
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.9e-116 422.9 287 72.8
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.1e-110 405.2 306 67.0
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.5e-93 346.7 209 78.9
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 4.9e-92 343.2 182 85.7
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 5.8e-85 319.7 431 47.1
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 2.9e-76 290.8 353 49.3
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 2.1e-71 274.6 221 63.8
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.8e-70 271.6 168 73.2
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.9e-67 261.5 210 61.9
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 6.7e-65 253.1 204 64.2
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 7.2e-51 206.5 179 61.5
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 3.1e-46 191.0 101 82.2
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 4.5e-45 187.2 218 44.5
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-45 186.8 101 82.2
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 1.7e-44 185.3 207 52.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 6.1e-34 150.2 80 81.2
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 3.5e-29 134.4 140 50.7
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 7.7e-29 133.3 161 50.3
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 1.4e-25 122.5 101 63.4
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.1e-22 112.8 63 76.2
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.6e-21 109.0 187 36.9
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.0e-21 108.6 187 36.9
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 7.8e-21 106.7 60 83.3
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 7.8e-21 106.7 127 52.0
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 5.6e-19 100.5 114 48.2
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 3.6e-18 97.8 110 51.8
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 7.5e-16 90.1 54 70.4
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.9e-11 75.5 74 52.7
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 2.5e-11 75.1 73 53.4
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 2.5e-11 75.1 49 77.6
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 1.6e-10 72.4 45 75.6
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 6.8e-09 67.0 46 71.7
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 9.8e-08 63.2 34 85.3
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.3e-07 62.8 40 70.0
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 8.3e-07 60.1 43 76.7
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 4.1e-06 57.8 106 39.6


User provided reference genes

Program Settings