Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024935 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 3.3e-136 488.4 251 100.0
vmacro22477 Vaccinium macrocarpon HOM05D001137 ORTHO05D005066 1.5e-72 276.9 272 63.6
Rhsim04G0218100 Rhododendron simsii HOM05D001137 ORTHO05D005066 2.8e-71 272.7 265 61.1
Actinidia01942 Actinidia chinensis HOM05D001137 ORTHO05D005066 9.0e-70 267.7 263 62.0
Hma1.2p1_0698F.1_g205450 Hydrangea macrophylla HOM05D001137 ORTHO05D005066 5.0e-68 261.9 264 60.6
Actinidia40240 Actinidia chinensis HOM05D001137 ORTHO05D005066 1.0e-65 254.2 264 59.1
Lj3C813G4 Lonicera japonica HOM05D001137 ORTHO05D005066 9.7e-64 247.7 267 57.3
RcHm_v2.0_Chr4g0421431 Rosa chinensis HOM05D001137 ORTHO05D005066 1.0e-60 237.7 271 56.8
Sabra08G0155800 Salix brachista HOM05D001137 ORTHO05D005066 4.2e-59 232.3 268 53.7
Prupe.1G140300 Prunus persica HOM05D001137 ORTHO05D005066 5.5e-59 231.9 268 55.6
FvH4_4g17510 Fragaria vesca HOM05D001137 ORTHO05D005066 9.4e-59 231.1 264 55.7
FAN07G1649 Fragaria x ananassa HOM05D001137 ORTHO05D005066 9.4e-59 231.1 271 53.5
FAN12G2022 Fragaria x ananassa HOM05D001137 ORTHO05D005066 2.1e-58 229.9 260 55.8
GSVIVG01017784001 Vitis vinifera HOM05D001137 ORTHO05D005066 1.8e-57 226.9 265 55.5
FAN17G0634 Fragaria x ananassa HOM05D001137 ORTHO05D005066 3.0e-57 226.1 263 54.0
Nn4g25962 Nelumbo nucifera HOM05D001137 ORTHO05D005066 3.9e-57 225.7 264 54.9
Lalb_Chr18g0055631 Lupinus albus HOM05D001137 ORTHO05D005066 1.5e-56 223.8 267 53.9
CANSAT78G1005 Cannabis sativa HOM05D001137 ORTHO05D005066 2.0e-56 223.4 261 55.2
Potri.010G022000 Populus trichocarpa HOM05D001137 ORTHO05D005066 2.5e-56 223.0 264 52.7
CiPaw.01G151600 Carya illinoinensis HOM05D001137 ORTHO05D005066 7.4e-56 221.5 266 53.8
PGSC0003DMG401022673 Solanum tuberosum HOM05D001137 ORTHO05D005066 7.4e-56 221.5 255 56.1
TAR365G1163 Trochodendron aralioides HOM05D001137 ORTHO05D005066 1.8e-54 216.9 266 50.8
Potri.008G214900 Populus trichocarpa HOM05D001137 ORTHO05D005066 2.4e-54 216.5 265 53.2
Ciclev10004439m.g Citrus clementina HOM05D001137 ORTHO05D005066 9.1e-54 214.5 265 52.1
COL.COLO4_13912 Corchorus olitorius HOM05D001137 ORTHO05D005066 9.1e-54 214.5 261 50.6
Nn3g21353 Nelumbo nucifera HOM05D001137 ORTHO05D005066 1.5e-53 213.8 259 51.0
ECA248G1543 Erigeron canadensis HOM05D001137 ORTHO05D005066 2.0e-53 213.4 259 54.4
Solyc01g067480.4 Solanum lycopersicum HOM05D001137 ORTHO05D005066 2.0e-53 213.4 252 53.2
Sopen01g029390 Solanum pennellii HOM05D001137 ORTHO05D005066 2.0e-53 213.4 252 54.0
SalBow2G1809 Salvia bowleyana HOM05D001137 ORTHO05D005066 4.5e-53 212.2 258 51.9
CARHR194430 Cardamine hirsuta HOM05D001137 ORTHO05D005066 1.7e-52 210.3 251 52.6
AL6G29860 Arabidopsis lyrata HOM05D001137 ORTHO05D005066 3.8e-52 209.1 259 52.5
Thecc.04G279600 Theobroma cacao HOM05D001137 ORTHO05D005066 3.8e-52 209.1 264 51.1
Carub.0006s1687 Capsella rubella HOM05D001137 ORTHO05D005066 8.5e-52 208.0 256 52.3
MD16G1173400 Malus domestica HOM05D001137 ORTHO05D005066 8.5e-52 208.0 265 52.1
BraA10t44162Z Brassica rapa HOM05D001137 ORTHO05D005066 1.1e-51 207.6 251 50.6
Lsat_1_v5_gn_5_157341 Lactuca sativa HOM05D001137 ORTHO05D005066 1.1e-51 207.6 250 53.2
CsaV3_3G014290 Cucumis sativus L. HOM05D001137 ORTHO05D005066 1.9e-51 206.8 265 49.4
MBI18_g01977_MAGBIO Magnolia biondii HOM05D001137 ORTHO05D005066 1.9e-51 206.8 274 49.6
CAN.G580.11 Capsicum annuum HOM05D001137 ORTHO05D005066 3.2e-51 206.1 261 50.6
AUR62031245 Chenopodium quinoa HOM05D001137 ORTHO05D005066 3.2e-51 206.1 282 47.2
TPR.G1509 Trifolium pratense HOM05D001137 ORTHO05D005066 3.2e-51 206.1 267 51.3
Gohir.A10G161500 Gossypium hirsutum HOM05D001137 ORTHO05D005066 4.2e-51 205.7 264 50.0
HanXRQChr13g0388221 Helianthus annuus HOM05D001137 ORTHO05D005066 4.2e-51 205.7 262 52.3
AT5G18590 Arabidopsis thaliana HOM05D001137 ORTHO05D005066 5.5e-51 205.3 260 51.2
BcaB08g36660 Brassica carinata HOM05D001137 ORTHO05D005066 7.2e-51 204.9 252 50.4
QL06p007709 Quercus lobata HOM05D001137 ORTHO05D005066 7.2e-51 204.9 261 51.3
Manes.03G192200 Manihot esculenta HOM05D001137 ORTHO05D005066 1.2e-50 204.1 261 49.8
A10p20970 Brassica napus HOM05D001137 ORTHO05D005066 1.6e-50 203.8 251 51.0
Thhalv10012828m.g Eutrema salsugineum HOM05D001137 ORTHO05D005066 1.6e-50 203.8 254 51.6
Sed0010501 Sechium edule HOM05D001137 ORTHO05D005066 1.6e-50 203.8 261 50.2
Sp6g25740 Schrenkiella parvula HOM05D001137 ORTHO05D005066 3.6e-50 202.6 259 50.6
arahy.Tifrunner.gnm1.ann1.GKEN9S Arachis hypogaea HOM05D001137 ORTHO05D005066 6.1e-50 201.8 270 51.1
arahy.Tifrunner.gnm1.ann1.HMK9CN Arachis hypogaea HOM05D001137 ORTHO05D005066 6.1e-50 201.8 270 51.1
EL10Ac7g16750 Beta vulgaris HOM05D001137 ORTHO05D005066 6.1e-50 201.8 280 46.4
Cc03_g02170 Coffea canephora HOM05D001137 ORTHO05D005066 6.1e-50 201.8 266 50.0
MELO3C006622.2 Cucumis melo HOM05D001137 ORTHO05D005066 6.1e-50 201.8 264 48.9
Manes.15G015400 Manihot esculenta HOM05D001137 ORTHO05D005066 1.4e-49 200.7 257 51.4
THA.LOC104802721 Tarenaya hassleriana HOM05D001137 ORTHO05D005066 2.3e-49 199.9 261 49.4
Lj6g0014210 Lotus japonicus HOM05D001137 ORTHO05D005066 3.0e-49 199.5 265 50.9
Gohir.D09G241100 Gossypium hirsutum HOM05D001137 ORTHO05D005066 3.3e-48 196.1 261 49.8
BcaC04g18664 Brassica carinata HOM05D001137 ORTHO05D005066 4.4e-48 195.7 250 49.6
C09p57890 Brassica napus HOM05D001137 ORTHO05D005066 4.4e-48 195.7 250 49.6
BolC9t58657H Brassica oleracea HOM05D001137 ORTHO05D005066 4.4e-48 195.7 250 49.6
Sc13g0003550 Simmondsia chinensis HOM05D001137 ORTHO05D005066 4.4e-48 195.7 256 49.6
Gohir.D10G168000 Gossypium hirsutum HOM05D001137 ORTHO05D005066 5.7e-48 195.3 264 48.9
Gorai.011G187500 Gossypium raimondii HOM05D001137 ORTHO05D005066 7.4e-48 194.9 265 49.4
Migut.G00190 Erythranthe guttata HOM05D001137 ORTHO05D005066 1.7e-47 193.7 260 48.5
Duzib151G0891 Durio zibethinus HOM05D001137 ORTHO05D005066 2.2e-47 193.4 264 49.2
AUR62027452 Chenopodium quinoa HOM05D001137 ORTHO05D005066 3.7e-47 192.6 280 45.4
Nitab4.5_0000829g0190 Nicotiana tabacum HOM05D001137 ORTHO05D005066 4.8e-47 192.2 263 49.0
Ah.08g211130 Amaranthus hybridus HOM05D001137 ORTHO05D005066 6.3e-47 191.8 279 45.2
Gorai.006G264600 Gossypium raimondii HOM05D001137 ORTHO05D005066 6.3e-47 191.8 265 49.4
Gohir.A09G240400 Gossypium hirsutum HOM05D001137 ORTHO05D005066 1.8e-46 190.3 261 49.4
VMungo0375G0001 Vigna mungo HOM05D001137 ORTHO05D005066 1.8e-46 190.3 261 50.2
Hund24915 Selenicereus undatus HOM05D001137 ORTHO05D005066 2.4e-46 189.9 280 46.4
Medtr2g019860 Medicago truncatula HOM05D001137 ORTHO05D005066 4.1e-46 189.1 155 68.4
PGR004G0465 Punica granatum HOM05D001137 ORTHO05D005066 5.3e-46 188.7 268 48.5
Medtr4g119100 Medicago truncatula HOM05D001137 ORTHO05D005066 7.0e-46 188.3 257 47.5
CSS0028405 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 2.0e-45 186.8 156 69.2
Nitab4.5_0000644g0060 Nicotiana tabacum HOM05D001137 ORTHO05D005066 2.6e-45 186.4 287 44.9
Sed0020296 Sechium edule HOM05D001137 ORTHO05D005066 4.5e-45 185.7 258 46.5
ATR0706G140 Amborella trichopoda HOM05D001137 ORTHO05D005066 1.7e-44 183.7 283 44.9
HanXRQChr01g0008171 Helianthus annuus HOM05D001137 ORTHO05D005066 2.2e-44 183.3 172 62.2
Lj4g0021111 Lotus japonicus HOM05D001137 ORTHO05D005066 2.2e-44 183.3 265 46.4
Peaxi162Scf00386g00616 Petunia axillaris HOM05D001137 ORTHO05D005066 2.9e-44 183.0 268 47.4
Glyma.13G216400 Glycine max HOM05D001137 ORTHO05D005066 8.5e-44 181.4 275 46.5
Psat1g187920 Pisum sativum HOM05D001137 ORTHO05D005066 8.5e-44 181.4 198 56.1
SGA_v2.0_scaffold86G26927 Striga asiatica HOM05D001137 ORTHO05D005066 1.9e-43 180.3 261 47.5
TWI73G0988 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 1.9e-43 180.3 261 47.1
Duzib212G0615 Durio zibethinus HOM05D001137 ORTHO05D005066 2.5e-43 179.9 264 48.1
Phvul.006G162800 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 3.2e-43 179.5 265 47.9
DCAR_030541 Daucus carota HOM05D001137 ORTHO05D005066 2.1e-42 176.8 270 44.4
PSO210G1694 Papaver somniferum HOM05D001137 ORTHO05D005066 2.1e-42 176.8 187 55.1
Phvul.003G102100 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 2.1e-42 176.8 264 46.6
VMungo1215G0971 Vigna mungo HOM05D001137 ORTHO05D005066 2.7e-42 176.4 264 45.8
PSO170G4147 Papaver somniferum HOM05D001137 ORTHO05D005066 6.1e-42 175.3 187 54.5
MSTRG.3938 Avicennia marina HOM05D001137 ORTHO05D005066 2.3e-41 173.3 260 45.4
TPR.G14624 Trifolium pratense HOM05D001137 ORTHO05D005066 4.0e-41 172.6 265 46.8
Glyma.17G024000 Glycine max HOM05D001137 ORTHO05D005066 1.5e-40 170.6 264 45.5
arahy.Tifrunner.gnm1.ann1.S97PWN Arachis hypogaea HOM05D001137 ORTHO05D005066 2.6e-40 169.9 264 45.5
arahy.Tifrunner.gnm1.ann1.SGL9NF Arachis hypogaea HOM05D001137 ORTHO05D005066 9.7e-40 167.9 264 45.5
Dinv38312 Davidia involucrata HOM05D001137 ORTHO05D005066 9.7e-40 167.9 103 84.5
Ca_21530_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 2.2e-39 166.8 263 44.9
Ca_21539_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 2.2e-39 166.8 263 44.9
HPP92_015154 Vanilla planifolia HOM05D001137 ORTHO05D005066 4.8e-39 165.6 267 41.9
unitig_748.g8584 Utricularia gibba HOM05D001137 ORTHO05D005066 6.3e-39 165.2 163 57.7
CDE11G0818 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 1.1e-38 164.5 264 42.0
ClCG05G005910 Citrullus lanatus HOM05D001137 ORTHO05D005066 3.5e-37 159.5 245 44.9
Glyma.07G250400 Glycine max HOM05D001137 ORTHO05D005066 1.0e-36 157.9 266 43.2
Aa31LG11G11030 Aethionema arabicum HOM05D001137 ORTHO05D005066 2.9e-36 156.4 260 41.9
Atru.chr4.2781 Acer truncatum HOM05D001137 ORTHO05D005066 6.5e-36 155.2 242 46.3
Ca_21531_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 2.1e-34 150.2 169 51.5
Ca_21540_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 2.1e-34 150.2 169 51.5
SEGI_27339 Sequoiadendron giganteum HOM05D001137 ORTHO05D005066 1.0e-33 147.9 145 54.5
TWI09G0222 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 1.0e-33 147.9 239 44.4
Zm00001eb410440 Zea mays HOM05D001137 ORTHO05D005066 1.7e-31 140.6 144 56.2
Os12g0538800 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D005066 4.1e-30 136.0 163 52.8
CDE05G0074 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 5.4e-30 135.6 243 42.0
Aqoxy2G03075 Aquilegia oxysepala HOM05D001137 ORTHO05D005066 4.5e-29 132.5 236 40.7
ClCG00G003670 Citrullus lanatus HOM05D001137 ORTHO05D005066 1.2e-26 124.4 220 41.8
Cpa.g.sc1214.1 Carica papaya HOM05D001137 ORTHO05D005066 1.6e-26 124.0 222 41.4
CSS0008512 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 1.2e-24 117.9 105 62.9
Glyma.15G096200 Glycine max HOM05D001137 ORTHO05D005066 3.4e-24 116.3 234 41.0
arahy.Tifrunner.gnm1.ann1.CD5QST Arachis hypogaea HOM05D001137 ORTHO05D005066 5.0e-20 102.4 75 76.0
arahy.Tifrunner.gnm1.ann1.8I1ERN Arachis hypogaea HOM05D001137 ORTHO05D005066 1.1e-19 101.3 140 48.6
AagrBONN_evm.TU.Sc2ySwM_344.1606 Anthoceros agrestis HOM05D001137 ORTHO05D005066 5.6e-19 99.0 171 39.8
Pp3c11_2880 Physcomitrium patens HOM05D001137 ORTHO05D005066 2.1e-18 97.1 75 64.0
Zm00001eb165710 Zea mays HOM05D001137 ORTHO05D005066 1.7e-15 87.4 98 51.0
SMO141G0291 Selaginella moellendorffii HOM05D001137 ORTHO05D005066 8.3e-15 85.1 55 74.5
BolC2t06908H Brassica oleracea HOM05D000116 ORTHO05D000133 1.1e-14 84.7 128 43.8
Pp3c1_4300 Physcomitrium patens HOM05D001137 ORTHO05D005066 1.8e-14 84.0 64 62.5
MD13G1171900 Malus domestica HOM05D001137 ORTHO05D005066 2.7e-13 80.1 243 32.5
Mapoly0008s0142 Marchantia polymorpha HOM05D001137 ORTHO05D005066 4.6e-13 79.3 64 62.5
Pp3c7_20910 Physcomitrium patens HOM05D001137 ORTHO05D005066 1.7e-12 77.4 76 50.0
Pp3c23_20210 Physcomitrium patens HOM05D001137 ORTHO05D005066 5.0e-12 75.9 71 49.3
BcaC03g13611 Brassica carinata HOM05D001137 ORTHO05D015478 2.5e-11 73.6 53 67.9
C02p10070 Brassica napus HOM05D001137 ORTHO05D005066 1.5e-08 64.3 48 70.8
PGSC0003DMG400019543 Solanum tuberosum HOM05D001137 ORTHO05D005066 2.6e-08 63.5 48 64.6
Dinv38313 Davidia involucrata HOM05D001137 ORTHO05D005066 3.7e-07 59.7 46 67.4
Ca_00560_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 8.3e-07 58.5 153 35.9


User provided reference genes

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