Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 3.6e-123 444.9 219 100.0
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 3.2e-111 405.2 219 89.5
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.7e-110 402.1 219 90.4
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 1.5e-108 396.4 219 86.8
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.6e-107 392.9 219 85.8
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 2.8e-107 392.1 219 84.9
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 6.2e-107 391.0 219 84.5
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 1.1e-106 390.2 219 85.8
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 1.8e-106 389.4 219 85.4
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.3e-106 389.0 219 84.0
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 5.2e-106 387.9 219 86.3
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 1.2e-105 386.7 219 84.5
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.7e-104 382.9 220 85.5
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 4.9e-104 381.3 220 85.5
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.1e-103 380.2 220 84.5
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 1.1e-103 380.2 220 85.0
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.9e-103 379.4 220 83.6
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.9e-103 379.4 220 84.1
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.2e-102 376.7 219 84.5
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 2.7e-102 375.6 219 83.6
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 3.5e-102 375.2 220 84.5
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 6.0e-102 374.4 220 82.3
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 6.0e-102 374.4 219 82.6
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 7.8e-102 374.0 220 81.8
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 2.3e-101 372.5 220 83.6
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.3e-101 372.5 221 84.6
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 2.3e-101 372.5 221 83.3
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 3.0e-101 372.1 228 79.8
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 5.1e-101 371.3 220 83.2
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 6.6e-101 370.9 220 84.1
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 8.6e-101 370.5 219 84.0
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.5e-100 369.8 221 82.4
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.5e-100 369.8 219 83.1
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 2.5e-100 369.0 220 82.7
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.5e-100 369.0 221 81.9
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.3e-100 368.6 221 81.9
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 3.3e-100 368.6 220 82.7
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 3.3e-100 368.6 219 83.1
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.6e-99 366.3 221 81.4
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.6e-99 366.3 220 82.3
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.6e-99 366.3 221 82.4
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 2.8e-99 365.5 220 81.8
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.8e-99 365.5 219 81.7
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 4.7e-99 364.8 220 81.8
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 6.2e-99 364.4 220 81.4
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 1.4e-98 363.2 221 80.1
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.8e-98 362.8 222 81.1
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.3e-98 362.5 219 80.4
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 2.3e-98 362.5 221 79.6
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 3.1e-98 362.1 219 78.5
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 5.2e-98 361.3 221 79.2
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 8.9e-98 360.5 219 78.5
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 8.9e-98 360.5 219 79.5
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 8.9e-98 360.5 219 79.5
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 1.2e-97 360.1 219 80.4
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.5e-97 359.8 219 78.5
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 1.3e-96 356.7 220 78.6
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 6.4e-96 354.4 219 80.4
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.9e-95 352.8 220 76.4
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 3.2e-95 352.1 219 79.9
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 4.1e-95 351.7 197 86.8
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.6e-94 349.7 238 76.1
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 2.1e-94 349.4 219 79.0
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 6.0e-94 347.8 232 73.7
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 6.6e-93 344.4 299 61.5
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 6.6e-93 344.4 219 75.8
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 8.6e-93 344.0 220 77.3
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 7.3e-92 340.9 220 76.4
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 9.6e-92 340.5 220 75.9
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 3.6e-91 338.6 220 75.9
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 3.1e-90 335.5 220 75.0
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 4.0e-90 335.1 219 75.8
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.2e-89 333.6 199 82.9
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 4.4e-89 331.6 193 82.4
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.8e-89 331.3 220 74.1
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.7e-88 329.7 192 82.8
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.2e-88 329.3 196 81.6
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 3.8e-88 328.6 220 73.6
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 4.2e-87 325.1 221 73.3
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 7.1e-87 324.3 319 56.4
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.2e-86 323.6 288 60.4
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.6e-86 323.2 193 82.4
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 4.6e-86 321.6 220 72.7
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 4.6e-86 321.6 193 81.3
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.9e-85 318.5 192 80.2
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 3.9e-85 318.5 219 69.9
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.5e-84 316.6 210 74.3
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 1.5e-84 316.6 212 73.6
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 5.6e-84 314.7 221 71.5
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 7.3e-84 314.3 221 71.9
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 7.3e-84 314.3 198 78.8
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.6e-83 313.2 193 79.3
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 8.1e-83 310.8 221 71.9
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 8.1e-83 310.8 221 71.9
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.1e-82 310.5 204 73.5
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.8e-82 309.7 193 78.8
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.1e-82 308.9 195 77.9
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 4.0e-82 308.5 221 71.5
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 5.3e-82 308.1 222 70.7
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 5.3e-82 308.1 222 70.7
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 3.4e-81 305.4 221 70.1
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 3.4e-81 305.4 221 70.1
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 5.8e-81 304.7 221 70.6
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 5.8e-81 304.7 193 78.8
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 9.9e-81 303.9 179 84.4
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 9.9e-81 303.9 183 81.4
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.3e-80 303.5 223 70.4
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.3e-80 303.5 193 73.6
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.7e-80 303.1 221 70.1
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.7e-80 303.1 171 83.6
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 2.9e-80 302.4 169 85.8
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 9.3e-79 297.4 221 69.2
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.2e-78 297.0 196 76.0
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 1.2e-78 297.0 213 67.6
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 6.0e-78 294.7 213 66.2
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 4.8e-75 285.0 220 65.0
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 3.1e-74 282.3 210 68.6
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.3e-72 276.9 219 60.7
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.1e-71 273.9 219 62.6
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 1.0e-69 267.3 163 81.6
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 9.6e-68 260.8 169 74.0
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.4e-66 256.9 224 61.2
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.4e-66 256.9 224 61.2
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.5e-65 253.4 158 79.1
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 4.5e-65 251.9 219 61.2
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 5.8e-65 251.5 226 57.5
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.3e-64 250.4 195 64.6
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.1e-63 247.3 195 67.2
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 1.4e-63 246.9 219 59.8
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 5.7e-60 235.0 222 54.5
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 7.4e-60 234.6 192 61.5
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.8e-59 232.6 221 52.0
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 2.1e-54 216.5 161 65.2
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 5.3e-50 201.8 182 59.3
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.6e-46 190.3 219 47.9
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.3e-43 180.6 152 59.9
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 2.2e-40 169.9 248 45.2
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 6.5e-40 168.3 93 84.9
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 1.6e-38 163.7 99 79.8
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 3.9e-37 159.1 228 39.5
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 4.1e-34 149.1 221 36.7
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 2.9e-32 142.9 218 37.6
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.9e-31 140.2 141 50.4
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.2e-28 131.0 84 77.4
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 7.0e-26 121.7 84 69.0
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 6.1e-22 108.6 93 59.1
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.8e-21 107.1 87 69.0
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 1.7e-16 90.5 148 42.6
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 8.3e-11 71.6 206 26.7


User provided reference genes

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