Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 8.6e-201 703.4 336 100.0
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.5e-173 611.3 348 83.9
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.5e-173 611.3 348 83.9
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 1.1e-168 596.7 347 82.4
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.7e-164 582.8 348 80.2
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.1e-163 580.1 349 80.5
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 7.1e-163 577.4 348 81.0
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 3.2e-155 552.0 334 77.8
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 4.2e-155 551.6 358 75.7
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 6.0e-154 547.7 370 73.5
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.7e-152 541.2 373 72.4
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 2.8e-151 538.9 340 75.9
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.1e-150 535.4 366 73.2
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.5e-149 533.1 350 73.7
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 5.9e-149 531.2 338 75.1
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 2.2e-148 529.3 342 74.6
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 2.2e-148 529.3 348 73.0
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 5.0e-148 528.1 361 70.6
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 8.5e-148 527.3 343 73.8
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.1e-147 526.9 339 74.6
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.4e-147 526.6 355 71.8
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 2.5e-147 525.8 348 73.0
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 2.5e-147 525.8 341 74.5
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 4.2e-147 525.0 361 70.1
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 2.1e-146 522.7 359 71.0
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 2.7e-146 522.3 356 70.8
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 7.9e-146 520.8 374 69.3
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.0e-145 520.4 354 72.0
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 8.8e-145 517.3 345 72.5
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 2.0e-144 516.2 347 72.6
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 3.3e-144 515.4 373 67.8
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 4.3e-144 515.0 343 72.6
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 7.4e-144 514.2 342 72.2
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 7.4e-144 514.2 346 70.2
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 9.7e-144 513.8 348 72.4
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 1.3e-143 513.5 346 70.2
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 2.2e-143 512.7 347 73.2
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.8e-143 512.3 363 70.2
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 2.8e-143 512.3 356 69.7
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 4.8e-143 511.5 364 70.3
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 4.8e-143 511.5 363 69.7
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 6.3e-143 511.1 338 72.8
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 8.2e-143 510.8 347 71.8
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.1e-142 510.4 346 69.7
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.4e-142 510.0 342 71.9
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.8e-142 509.6 341 72.1
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 3.1e-142 508.8 346 71.1
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 3.1e-142 508.8 364 70.1
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 5.3e-142 508.1 356 69.4
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 5.3e-142 508.1 343 71.7
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.5e-141 506.5 341 72.1
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 4.5e-141 505.0 360 68.9
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 5.9e-141 504.6 346 71.1
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 5.9e-141 504.6 362 68.8
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.3e-140 503.4 344 71.8
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.7e-140 503.1 360 68.9
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 2.9e-140 502.3 361 68.4
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.8e-140 501.9 355 69.3
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 5.0e-140 501.5 355 69.3
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 5.0e-140 501.5 372 67.5
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 8.5e-140 500.7 356 68.3
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 1.4e-139 500.0 351 68.9
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.9e-139 499.6 355 69.3
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 3.2e-139 498.8 343 70.6
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 4.2e-139 498.4 325 75.4
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.6e-138 496.5 356 69.4
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.7e-138 495.7 351 70.4
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 4.7e-138 495.0 349 69.1
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 6.1e-138 494.6 349 69.1
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.8e-137 493.0 347 70.9
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 6.7e-137 491.1 339 71.4
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.1e-136 490.3 351 68.7
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 3.3e-136 488.8 347 70.3
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 7.4e-136 487.6 336 71.4
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 7.4e-136 487.6 344 68.9
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.3e-135 486.9 354 67.8
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.1e-134 482.3 354 67.5
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.5e-133 479.9 353 66.9
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.5e-133 479.9 328 70.7
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 2.6e-133 479.2 337 68.8
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 2.6e-133 479.2 365 65.8
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.3e-132 476.9 351 67.5
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.7e-132 476.5 426 59.9
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 5.0e-132 474.9 333 71.5
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 4.2e-131 471.9 359 66.9
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 5.5e-131 471.5 335 68.4
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 7.2e-131 471.1 372 66.4
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 7.2e-131 471.1 351 67.0
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.6e-130 469.9 358 64.5
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.0e-129 467.2 347 67.4
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 5.2e-129 464.9 352 66.5
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 3.3e-128 462.2 352 67.0
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.4e-128 461.8 408 59.8
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 5.7e-128 461.5 343 68.5
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 5.7e-128 461.5 514 50.6
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 9.7e-128 460.7 335 66.9
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.7e-127 459.9 352 64.8
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.2e-127 459.5 362 62.4
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 4.8e-127 458.4 354 66.7
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 6.3e-127 458.0 345 67.2
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 1.1e-126 457.2 347 67.1
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 1.1e-126 457.2 347 67.1
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.1e-126 457.2 352 65.1
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.1e-126 457.2 372 61.6
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.4e-126 456.8 352 65.1
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 3.1e-126 455.7 352 65.9
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.6e-125 453.4 352 65.6
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 5.9e-125 451.4 352 63.9
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 5.9e-125 451.4 334 65.9
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 5.9e-125 451.4 406 57.9
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.3e-124 450.3 361 64.3
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.9e-124 449.1 341 66.0
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 5.0e-124 448.4 350 65.1
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 1.6e-122 443.4 335 66.3
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 2.1e-122 443.0 344 65.4
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 3.6e-122 442.2 344 65.1
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 6.1e-122 441.4 337 65.9
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 4.0e-121 438.7 344 64.5
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 4.4e-120 435.3 352 64.2
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 2.2e-119 433.0 337 66.2
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 2.8e-119 432.6 344 66.3
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 3.7e-119 432.2 354 61.9
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.8e-119 431.8 368 60.9
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 5.3e-118 428.3 315 67.9
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.7e-116 423.3 352 61.1
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.6e-114 416.8 363 59.8
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 8.8e-113 411.0 330 66.4
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 8.8e-113 411.0 361 59.6
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 3.4e-112 409.1 308 65.3
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 5.7e-112 408.3 327 65.1
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.0e-108 397.5 322 61.5
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.9e-107 393.3 362 55.2
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 2.8e-98 362.8 348 55.7
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 2.2e-95 353.2 331 57.1
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 5.8e-88 328.6 386 48.2
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 6.4e-87 325.1 243 63.4
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.4e-86 323.2 379 47.5
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.1e-75 287.7 377 44.8
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 4.3e-75 285.8 298 54.4
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.2e-74 284.3 372 45.4
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 6.2e-74 282.0 168 78.0
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.2e-73 278.9 208 71.2
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 6.4e-71 271.9 344 44.8
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 3.5e-69 266.2 238 55.0
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.7e-68 263.8 213 65.7
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 5.3e-65 252.3 240 56.2
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 5.3e-65 252.3 240 56.2
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.5e-64 250.8 395 38.5
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 4.6e-61 239.2 233 60.9
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 1.3e-58 231.1 187 64.2
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 1.3e-58 231.1 178 68.5
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.3e-50 204.5 134 76.1
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 2.3e-44 183.7 128 63.3
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.2e-40 171.4 122 69.7
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.3e-39 167.9 102 74.5
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 5.5e-38 162.5 359 34.3
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 8.7e-36 155.2 346 34.1
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 2.3e-28 130.6 72 80.6
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 2.0e-16 90.9 78 62.8
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 7.2e-14 82.4 63 63.5
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.2e-08 65.1 33 78.8


User provided reference genes

Program Settings