Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 9.4e-59 230.3 148 100.0
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.4e-25 120.2 74 83.8
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 2.0e-24 116.3 74 79.7
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 2.6e-24 115.9 74 78.4
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 5.8e-24 114.8 74 78.4
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 7.5e-24 114.4 74 77.0
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 7.5e-24 114.4 74 77.0
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 7.5e-24 114.4 74 77.0
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 1.3e-23 113.6 74 78.4
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.7e-23 113.2 74 75.7
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.7e-23 113.2 74 75.7
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 1.7e-23 113.2 74 75.7
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 1.7e-23 113.2 74 77.0
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 1.7e-23 113.2 74 77.0
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 1.7e-23 113.2 74 75.7
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 2.2e-23 112.8 74 75.7
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 2.2e-23 112.8 78 73.1
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.2e-23 112.8 74 75.7
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.2e-23 112.8 74 75.7
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.2e-23 112.8 74 75.7
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 2.9e-23 112.5 74 78.4
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 2.9e-23 112.5 74 77.0
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 3.7e-23 112.1 74 74.3
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 3.7e-23 112.1 74 75.7
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 3.7e-23 112.1 74 75.7
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 3.7e-23 112.1 94 64.9
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 3.7e-23 112.1 74 75.7
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 3.7e-23 112.1 74 75.7
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 4.9e-23 111.7 74 74.3
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 4.9e-23 111.7 74 74.3
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 4.9e-23 111.7 74 74.3
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 4.9e-23 111.7 74 74.3
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 4.9e-23 111.7 74 74.3
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 6.4e-23 111.3 74 74.3
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 8.3e-23 110.9 74 77.0
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 8.3e-23 110.9 97 62.9
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 8.3e-23 110.9 74 75.7
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 1.1e-22 110.5 74 74.3
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.1e-22 110.5 74 74.3
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.1e-22 110.5 74 74.3
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.1e-22 110.5 74 74.3
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.1e-22 110.5 74 74.3
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 1.1e-22 110.5 74 74.3
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 1.1e-22 110.5 74 78.4
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.1e-22 110.5 74 75.7
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.1e-22 110.5 74 75.7
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 1.1e-22 110.5 74 74.3
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 1.4e-22 110.2 74 73.0
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 1.4e-22 110.2 97 61.9
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 1.4e-22 110.2 74 77.0
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 1.4e-22 110.2 74 74.3
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 2.4e-22 109.4 74 74.3
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 2.4e-22 109.4 74 73.0
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 2.4e-22 109.4 74 73.0
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 2.4e-22 109.4 74 73.0
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 3.2e-22 109.0 74 73.0
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 3.2e-22 109.0 77 74.0
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 4.1e-22 108.6 74 73.0
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 4.1e-22 108.6 93 65.6
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 4.1e-22 108.6 74 71.6
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 4.1e-22 108.6 74 74.3
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 5.4e-22 108.2 74 73.0
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 5.4e-22 108.2 74 71.6
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 5.4e-22 108.2 74 73.0
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 7.0e-22 107.8 74 74.3
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 9.2e-22 107.5 75 73.3
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 1.2e-21 107.1 74 73.0
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 1.2e-21 107.1 74 73.0
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.2e-21 107.1 74 71.6
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 1.6e-21 106.7 74 71.6
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 1.6e-21 106.7 74 73.0
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 1.6e-21 106.7 74 71.6
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 1.6e-21 106.7 74 74.3
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.6e-21 106.7 74 71.6
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 2.1e-21 106.3 74 74.3
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 2.1e-21 106.3 74 71.6
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 2.1e-21 106.3 104 55.8
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 2.1e-21 106.3 74 73.0
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 2.7e-21 105.9 74 74.3
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 2.7e-21 105.9 74 74.3
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 2.7e-21 105.9 74 73.0
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 2.7e-21 105.9 74 70.3
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 2.7e-21 105.9 74 74.3
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 2.7e-21 105.9 74 71.6
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 2.7e-21 105.9 74 71.6
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 2.7e-21 105.9 74 70.3
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 3.5e-21 105.5 74 73.0
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 3.5e-21 105.5 74 73.0
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 3.5e-21 105.5 74 73.0
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 3.5e-21 105.5 74 73.0
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 3.5e-21 105.5 74 73.0
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 3.5e-21 105.5 74 73.0
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 3.5e-21 105.5 74 70.3
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 3.5e-21 105.5 74 73.0
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 3.5e-21 105.5 74 73.0
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 4.6e-21 105.1 74 68.9
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 4.6e-21 105.1 74 68.9
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 6.0e-21 104.8 75 68.0
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 6.0e-21 104.8 74 70.3
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 7.8e-21 104.4 74 70.3
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 7.8e-21 104.4 74 70.3
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 7.8e-21 104.4 74 68.9
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 1.0e-20 104.0 74 71.6
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 1.0e-20 104.0 74 71.6
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 1.0e-20 104.0 74 67.6
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 1.0e-20 104.0 74 68.9
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 1.3e-20 103.6 74 67.6
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 1.3e-20 103.6 74 68.9
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.7e-20 103.2 74 71.6
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 1.7e-20 103.2 74 67.6
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 1.7e-20 103.2 74 71.6
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 2.3e-20 102.8 74 70.3
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 2.3e-20 102.8 74 70.3
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 3.0e-20 102.4 74 70.3
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 3.0e-20 102.4 74 70.3
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 3.0e-20 102.4 74 70.3
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 3.9e-20 102.1 74 70.3
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 3.9e-20 102.1 74 67.6
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 3.9e-20 102.1 74 71.6
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 6.6e-20 101.3 74 66.2
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 8.6e-20 100.9 74 70.3
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 1.5e-19 100.1 74 63.5
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 3.3e-19 99.0 96 59.4
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 4.3e-19 98.6 74 66.2
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 2.1e-18 96.3 73 65.8
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 3.6e-18 95.5 74 63.5
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 4.7e-18 95.1 74 62.2
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 1.1e-17 94.0 76 64.5
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.1e-17 94.0 76 64.5
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 3.1e-17 92.4 74 59.5
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 3.1e-17 92.4 74 59.5
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 8.9e-17 90.9 74 62.2
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.2e-16 90.5 74 60.8
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 1.2e-16 90.5 74 60.8
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 1.5e-16 90.1 74 59.5
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.5e-16 90.1 73 60.3
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.5e-16 90.1 73 60.3
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 4.4e-16 88.6 73 60.3
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 4.4e-16 88.6 71 62.0
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 5.8e-16 88.2 73 61.6
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 9.9e-16 87.4 74 55.4
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 1.3e-15 87.0 73 58.9
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.9e-15 85.9 68 64.7
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.9e-15 85.9 87 57.5
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 6.4e-15 84.7 73 57.5
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 8.3e-15 84.3 73 57.5
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.1e-14 84.0 74 54.1
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 4.1e-14 82.0 74 52.7
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 5.1e-12 75.1 94 40.4
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 5.6e-11 71.6 74 48.6
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.6e-08 62.8 40 72.5
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 3.4e-08 62.4 76 46.1
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 6.4e-07 58.2 78 43.6
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.1e-06 57.4 26 92.3
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 3.2e-06 55.8 61 50.8


User provided reference genes

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