Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 3.4e-129 464.9 222 100.0
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 3.9e-101 371.7 222 79.3
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.6e-99 366.3 222 76.1
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 6.9e-98 360.9 218 78.4
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 1.3e-96 356.7 214 77.1
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.7e-96 356.3 218 76.1
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 2.9e-96 355.5 218 74.3
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 3.2e-95 352.1 218 75.2
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 4.2e-95 351.7 222 74.3
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 4.2e-95 351.7 217 74.2
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 2.1e-94 349.4 218 72.5
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 6.7e-93 344.4 217 72.4
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 2.5e-92 342.4 218 71.6
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 4.3e-92 341.7 218 71.1
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 9.7e-92 340.5 215 73.5
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 9.7e-92 340.5 217 72.4
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 9.7e-92 340.5 217 72.4
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 1.7e-91 339.7 217 71.9
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 3.7e-91 338.6 218 70.6
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 4.1e-90 335.1 217 71.0
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 4.1e-90 335.1 218 68.8
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 6.9e-90 334.3 218 68.8
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 6.9e-90 334.3 214 69.6
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 9.1e-90 334.0 218 70.6
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.2e-89 333.6 216 69.9
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 2.0e-89 332.8 219 69.9
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 2.0e-89 332.8 214 69.2
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 3.4e-89 332.0 219 70.8
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 4.5e-89 331.6 217 69.1
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 1.3e-88 330.1 214 68.7
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 2.2e-88 329.3 213 69.0
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 2.9e-88 328.9 216 70.8
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 3.8e-88 328.6 218 68.3
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 3.8e-88 328.6 218 68.8
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 6.5e-88 327.8 218 68.3
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 6.5e-88 327.8 218 68.3
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 6.5e-88 327.8 212 70.8
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 2.5e-87 325.9 217 68.2
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 5.5e-87 324.7 217 67.7
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 9.4e-87 323.9 213 68.5
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 1.6e-86 323.2 217 67.7
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.6e-86 323.2 218 67.0
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.6e-86 323.2 215 69.8
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 1.6e-86 323.2 217 68.7
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 4.7e-86 321.6 214 67.8
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 6.1e-86 321.2 218 67.9
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 6.1e-86 321.2 218 66.1
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 1.0e-85 320.5 217 65.4
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 3.9e-85 318.5 218 67.9
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 6.7e-85 317.8 214 68.2
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 6.7e-85 317.8 218 67.0
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 6.7e-85 317.8 212 69.8
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 6.7e-85 317.8 211 69.7
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 8.8e-85 317.4 214 67.3
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.1e-84 317.0 218 65.1
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.1e-84 317.0 217 68.2
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 1.1e-84 317.0 214 66.4
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 1.1e-84 317.0 214 68.2
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.5e-84 316.6 218 65.6
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.5e-84 316.6 214 67.8
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 2.0e-84 316.2 210 69.0
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 3.3e-84 315.5 218 65.1
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 3.3e-84 315.5 218 65.6
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 3.3e-84 315.5 218 64.7
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 3.3e-84 315.5 218 65.6
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.4e-84 315.1 250 61.2
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 4.4e-84 315.1 212 68.4
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.7e-83 313.2 217 65.9
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 1.7e-83 313.2 218 65.1
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 1.7e-83 313.2 218 65.1
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 3.7e-83 312.0 218 67.0
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 4.8e-83 311.6 211 67.3
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 1.1e-82 310.5 207 68.6
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 1.8e-82 309.7 210 68.6
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 2.4e-82 309.3 218 63.8
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 3.1e-82 308.9 214 67.3
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 5.3e-82 308.1 218 66.1
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 7.0e-82 307.8 218 63.3
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 1.3e-80 303.5 217 65.0
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.7e-80 303.1 211 64.0
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 5.0e-80 301.6 214 66.4
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 6.5e-80 301.2 210 65.2
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 1.9e-79 299.7 220 63.6
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.9e-79 299.7 212 65.1
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 3.2e-79 298.9 210 63.8
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 3.2e-79 298.9 208 64.9
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 4.2e-79 298.5 211 66.8
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 6.1e-78 294.7 211 65.9
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 1.8e-77 293.1 218 61.5
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.3e-77 292.7 217 60.4
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.3e-77 292.7 218 61.0
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 2.3e-77 292.7 217 61.8
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 1.1e-76 290.4 221 58.4
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.3e-75 287.0 216 59.3
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 2.8e-75 285.8 194 68.6
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 1.4e-74 283.5 217 59.9
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 2.4e-74 282.7 218 58.7
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 5.3e-74 281.6 195 66.2
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.0e-72 277.3 189 65.1
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.1e-71 273.9 176 69.9
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 3.2e-71 272.3 218 61.5
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.1e-70 269.6 205 62.4
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 3.6e-70 268.9 207 56.0
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.7e-70 268.5 200 64.0
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 2.6e-68 262.7 204 55.9
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.7e-67 260.0 200 62.5
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.1e-66 257.3 207 51.2
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.6e-65 253.4 205 59.0
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.8e-64 248.8 166 67.5
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.8e-61 240.0 204 52.0
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 2.8e-59 232.6 219 51.6
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 4.1e-58 228.8 209 50.7
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 5.4e-58 228.4 197 56.3
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 1.2e-57 227.3 147 65.3
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 1.7e-56 223.4 141 72.3
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 5.0e-56 221.9 147 66.0
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 5.0e-56 221.9 207 48.3
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.9e-55 219.9 209 50.7
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.8e-54 216.1 145 65.5
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 4.9e-51 205.3 196 48.5
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.9e-48 195.7 231 45.0
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 6.6e-48 194.9 127 68.5
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.2e-46 190.7 171 50.3
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 6.2e-46 188.3 211 41.7
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.2e-45 185.3 173 50.9
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 4.4e-44 182.2 200 48.0
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.2e-38 164.1 220 40.5
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.6e-38 162.5 110 70.0
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 8.9e-37 157.9 110 68.2
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 9.2e-26 121.3 74 66.2
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 2.1e-25 120.2 208 33.2
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 4.6e-25 119.0 214 36.9
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 6.0e-25 118.6 139 45.3
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 7.8e-25 118.2 72 77.8
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 1.1e-23 114.4 81 69.1
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.9e-23 113.6 117 46.2
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 1.9e-23 113.6 117 46.2
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 1.2e-22 110.9 117 44.4
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 2.1e-22 110.2 233 31.3
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 2.4e-21 106.7 68 66.2
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.5e-17 92.8 213 29.1
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 6.0e-17 92.0 216 26.9
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.3e-16 90.1 56 69.6
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 5.6e-15 85.5 50 76.0
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 9.6e-15 84.7 84 48.8
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.8e-14 83.2 109 45.0
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 3.1e-13 79.7 180 27.2
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.3e-11 74.3 212 23.6
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 3.2e-10 69.7 190 26.8
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 5.4e-10 68.9 40 75.0
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 3.5e-09 66.2 47 63.8
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 5.6e-07 58.9 83 41.0
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.3e-06 57.8 191 22.5
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 1.6e-06 57.4 83 39.8
CAN.G1148.3 Capsicum annuum HOM05D001556 ORTHO05D001505 2.8e-06 56.6 59 54.2


User provided reference genes

Program Settings