Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.5e-231 805.8 409 100.0
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 3.8e-219 764.6 397 98.2
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 5.4e-205 717.6 417 89.0
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 6.6e-187 657.5 409 84.4
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.6e-185 652.9 366 92.9
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 1.6e-177 626.3 405 80.2
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 1.4e-176 623.2 396 81.3
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 4.4e-167 591.7 412 75.7
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 1.1e-165 587.0 361 81.2
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 1.3e-163 580.1 416 71.9
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 1.7e-163 579.7 419 72.3
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 3.9e-163 578.6 416 74.5
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 9.6e-162 573.9 406 73.2
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 2.4e-160 569.3 365 78.1
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 5.3e-160 568.2 392 73.7
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 6.9e-160 567.8 406 72.4
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 1.2e-159 567.0 411 72.0
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 7.6e-159 564.3 407 70.3
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 6.4e-158 561.2 423 70.4
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 8.4e-158 560.8 413 70.5
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 1.1e-157 560.5 419 69.9
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 2.4e-157 559.3 409 69.9
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 4.2e-157 558.5 371 74.9
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 1.6e-156 556.6 374 75.4
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 1.0e-155 553.9 407 70.0
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 2.3e-155 552.7 362 76.2
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 3.0e-155 552.4 409 69.7
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 1.1e-154 550.4 396 70.2
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 1.1e-154 550.4 375 75.2
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 2.5e-154 549.3 368 75.8
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 6.2e-153 544.7 382 72.5
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 1.1e-152 543.9 412 67.7
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 1.8e-152 543.1 368 74.5
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 3.1e-152 542.3 409 68.0
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 5.3e-152 541.6 376 72.6
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 6.9e-152 541.2 352 77.6
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 1.2e-151 540.4 376 72.3
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 4.5e-151 538.5 365 74.0
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 5.8e-151 538.1 374 72.7
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 9.9e-151 537.3 368 73.6
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 1.3e-150 537.0 381 70.9
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 3.8e-150 535.4 409 68.0
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 1.1e-149 533.9 372 72.6
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 7.1e-149 531.2 360 74.7
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 9.3e-149 530.8 419 68.5
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 2.7e-148 529.3 374 71.7
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 6.0e-148 528.1 372 72.0
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 7.9e-148 527.7 377 70.3
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 2.3e-147 526.2 352 75.0
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 7.4e-146 521.2 360 73.9
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 9.6e-146 520.8 362 74.3
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 1.8e-144 516.5 426 64.8
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 3.1e-144 515.8 426 65.3
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 3.1e-144 515.8 411 64.7
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 3.1e-144 515.8 370 71.4
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 6.9e-144 514.6 363 74.1
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 1.5e-143 513.5 412 65.5
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 2.0e-143 513.1 451 61.0
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 7.6e-143 511.1 361 72.6
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 7.6e-143 511.1 394 66.0
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 1.7e-142 510.0 361 71.7
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 1.7e-142 510.0 423 64.1
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 2.2e-142 509.6 377 68.7
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 4.9e-142 508.4 383 66.8
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 1.2e-140 503.8 371 67.7
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 3.5e-140 502.3 362 69.9
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 1.0e-139 500.7 392 65.6
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 1.0e-139 500.7 346 74.3
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.0e-139 500.7 363 70.5
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 2.3e-139 499.6 394 63.5
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 6.7e-139 498.0 350 72.6
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 8.7e-139 497.7 365 67.9
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.1e-138 497.3 403 65.5
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 1.9e-138 496.5 371 67.1
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 4.3e-138 495.4 403 65.5
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 5.7e-138 495.0 370 69.7
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 1.6e-137 493.4 371 65.8
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 1.6e-137 493.4 371 65.8
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 2.8e-137 492.7 365 67.1
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 3.7e-137 492.3 365 66.8
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 2.4e-136 489.6 409 64.1
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 3.1e-136 489.2 369 66.9
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 4.1e-136 488.8 367 67.3
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 1.5e-135 486.9 365 66.6
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 1.5e-135 486.9 410 63.7
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 1.7e-134 483.4 367 67.8
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 1.7e-134 483.4 368 67.4
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 3.6e-132 475.7 313 76.7
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 1.1e-128 464.2 354 67.2
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 3.1e-128 462.6 321 74.5
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 6.9e-128 461.5 316 71.8
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 8.2e-121 438.0 271 77.9
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 3.0e-115 419.5 325 65.2
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 2.6e-111 406.4 360 57.2
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.5e-109 399.8 352 56.2
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.0e-106 390.2 357 54.9
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 6.8e-99 365.2 361 52.9
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 4.7e-92 342.4 420 50.7
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 6.3e-89 332.0 264 61.7
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 9.5e-85 318.2 264 61.0
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 1.6e-84 317.4 258 66.7
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.3e-83 313.5 360 47.2
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 2.7e-79 300.1 186 81.7
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 2.7e-71 273.5 179 77.7
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 3.0e-70 270.0 411 38.9
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 3.0e-70 270.0 411 38.9
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 9.5e-69 265.0 411 37.5
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 9.5e-69 265.0 183 68.3
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 2.1e-68 263.8 362 42.5
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 7.6e-58 228.8 249 50.2
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.9e-56 224.2 517 29.8
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 4.2e-56 223.0 344 42.4
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 1.6e-47 194.5 364 38.2
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 1.7e-46 191.0 204 54.4
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 2.2e-41 174.1 190 51.1
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 1.2e-34 151.8 115 64.3
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 1.0e-22 112.1 68 82.4
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 1.3e-20 105.1 71 76.1
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 4.1e-19 100.1 70 74.3
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 4.1e-19 100.1 173 38.2
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.7e-17 94.7 174 34.5
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.0e-17 93.2 178 34.3
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 1.1e-16 92.0 61 65.6
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.7e-15 87.4 172 31.4
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 4.6e-15 86.7 66 68.2
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 3.1e-11 73.9 53 73.6


User provided reference genes

Program Settings