Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024873 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.4e-77 292.0 137 100.0
CSS0044724 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 3.2e-69 265.0 143 89.5
CSS0033656 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.1e-65 252.3 141 85.8
CSS0004487 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 8.1e-65 250.4 153 83.0
CSS0050092 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.8e-64 249.2 171 74.3
CSS0031502 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.9e-62 241.9 167 73.7
CSS0028931 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 6.4e-62 240.7 167 73.7
CSS0000454 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.5e-61 238.8 167 72.5
CSS0050453 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 5.5e-61 237.7 167 72.5
CSS0016678 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.5e-47 191.4 168 61.9
Rhsim10G0191400 Rhododendron simsii HOM05D000649 ORTHO05D000513 1.9e-29 132.9 79 77.2
vmacro20607 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 5.2e-27 124.8 83 68.7
Actinidia22858 Actinidia chinensis HOM05D000649 ORTHO05D000513 2.4e-24 115.9 80 71.2
Cpa.g.sc26.10 Carica papaya HOM05D000649 ORTHO05D000513 3.1e-24 115.5 91 54.9
TAR628G0170 Trochodendron aralioides HOM05D000649 ORTHO05D000513 9.1e-24 114.0 98 55.1
Hma1.2p1_0085F.1_g044350 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 1.0e-22 110.5 79 60.8
TAR381G0051 Trochodendron aralioides HOM05D000649 ORTHO05D000513 3.8e-22 108.6 100 50.0
Nn5g31051 Nelumbo nucifera HOM05D000649 ORTHO05D000513 6.5e-22 107.8 98 53.1
Manes.05G127900 Manihot esculenta HOM05D000649 ORTHO05D000513 4.2e-21 105.1 86 54.7
TAR376G0834 Trochodendron aralioides HOM05D000649 ORTHO05D000513 1.2e-20 103.6 79 57.0
Atru.chr13.58 Acer truncatum HOM05D000649 ORTHO05D000513 1.6e-20 103.2 103 51.5
Potri.002G004600 Populus trichocarpa HOM05D000649 ORTHO05D000513 2.1e-20 102.8 96 51.0
CiPaw.07G133300 Carya illinoinensis HOM05D000649 ORTHO05D000513 2.7e-20 102.4 90 52.2
Hma1.2p1_0699F.1_g205730 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 4.7e-20 101.7 86 51.2
Prupe.5G005300 Prunus persica HOM05D000649 ORTHO05D000513 6.1e-20 101.3 106 44.3
CARHR070020 Cardamine hirsuta HOM05D000649 ORTHO05D000513 1.4e-19 100.1 77 55.8
Haze_22865 Corylus avellana HOM05D000649 ORTHO05D000513 2.3e-19 99.4 90 50.0
AL2G36600 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 3.0e-19 99.0 84 51.2
PGSC0003DMG400009999 Solanum tuberosum HOM05D000649 ORTHO05D000513 3.0e-19 99.0 98 46.9
CiPaw.08G077300 Carya illinoinensis HOM05D000649 ORTHO05D000513 5.2e-19 98.2 97 47.4
Nitab4.5_0010897g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 5.2e-19 98.2 79 54.4
Sopen04g036410 Solanum pennellii HOM05D000649 ORTHO05D000513 5.2e-19 98.2 98 45.9
Actinidia17079 Actinidia chinensis HOM05D000649 ORTHO05D000513 6.8e-19 97.8 79 54.4
Prupe.7G186900 Prunus persica HOM05D000649 ORTHO05D000513 6.8e-19 97.8 77 55.8
Cfa014139 Carpinus fangiana HOM05D001065 ORTHO05D000513 8.8e-19 97.4 117 43.6
Sp5g31630 Schrenkiella parvula HOM05D000649 ORTHO05D000513 8.8e-19 97.4 100 47.0
THA.LOC104813737 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 8.8e-19 97.4 96 46.9
TWI36G1513 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 8.8e-19 97.4 79 57.0
CSS0025109 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D000513 1.2e-18 97.1 79 53.2
PSO675G8806 Papaver somniferum HOM05D000649 ORTHO05D000513 1.2e-18 97.1 81 51.9
Carub.0002s2338 Capsella rubella HOM05D000649 ORTHO05D000513 1.5e-18 96.7 77 53.2
Eucgr.J02558 Eucalyptus grandis HOM05D000649 ORTHO05D000513 1.5e-18 96.7 79 51.9
Rhsim06G0003000 Rhododendron simsii HOM05D000649 ORTHO05D000513 1.5e-18 96.7 88 50.0
Sabra02G0003100 Salix brachista HOM05D000649 ORTHO05D000513 1.5e-18 96.7 96 47.9
Cc10_g00240 Coffea canephora HOM05D000649 ORTHO05D000513 2.0e-18 96.3 98 43.9
Dinv13765 Davidia involucrata HOM05D000649 ORTHO05D000513 2.0e-18 96.3 98 45.9
Lj2C505G3 Lonicera japonica HOM05D000649 ORTHO05D000513 2.6e-18 95.9 86 52.3
MD06G1004000 Malus domestica HOM05D000649 ORTHO05D000513 2.6e-18 95.9 127 40.2
A07p42130 Brassica napus HOM05D000649 ORTHO05D000513 3.4e-18 95.5 100 48.0
AT1G76460 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 4.4e-18 95.1 77 51.9
Glyma.06G014300 Glycine max HOM05D000649 ORTHO05D000513 4.4e-18 95.1 79 51.9
Nn6g31618 Nelumbo nucifera HOM05D000649 ORTHO05D000513 4.4e-18 95.1 79 55.7
Lalb_Chr08g0246551 Lupinus albus HOM05D000649 ORTHO05D000513 7.5e-18 94.4 86 46.5
Thhalv10018983m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 9.7e-18 94.0 99 45.5
FAN23G1151 Fragaria x ananassa HOM05D000649 ORTHO05D000513 9.7e-18 94.0 81 53.1
FAN26G0796 Fragaria x ananassa HOM05D000649 ORTHO05D000513 9.7e-18 94.0 81 53.1
VMungo1309G1435 Vigna mungo HOM05D000649 ORTHO05D000513 9.7e-18 94.0 79 50.6
Aqoxy6G02997 Aquilegia oxysepala HOM05D000649 ORTHO05D000513 1.3e-17 93.6 85 52.9
MBI01_g28406_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 1.3e-17 93.6 109 46.8
Manes.18G001800 Manihot esculenta HOM05D000649 ORTHO05D000513 1.3e-17 93.6 76 55.3
Actinidia15526 Actinidia chinensis HOM05D000649 ORTHO05D000513 1.7e-17 93.2 79 51.9
Ca_04244_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 1.7e-17 93.2 86 47.7
Ca_15383_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 1.7e-17 93.2 86 47.7
TWI56G0525 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 1.7e-17 93.2 79 55.7
arahy.Tifrunner.gnm1.ann1.T7FLND Arachis hypogaea HOM05D000649 ORTHO05D000513 2.2e-17 92.8 79 50.6
FvH4_1g09990 Fragaria vesca HOM05D000649 ORTHO05D000513 2.2e-17 92.8 84 52.4
FAN23G2635 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.2e-17 92.8 81 53.1
Lalb_Chr23g0265501 Lupinus albus HOM05D000649 ORTHO05D000513 2.2e-17 92.8 72 52.8
Sabra05G0198800 Salix brachista HOM05D000649 ORTHO05D000513 2.8e-17 92.4 85 50.6
QL02p015755 Quercus lobata HOM05D000649 ORTHO05D000513 3.7e-17 92.0 74 52.7
Lalb_Chr11g0061361 Lupinus albus HOM05D000649 ORTHO05D000513 4.8e-17 91.7 79 49.4
COL.COLO4_12296 Corchorus olitorius HOM05D000649 ORTHO05D000513 6.3e-17 91.3 104 43.3
Psat5g008440 Pisum sativum HOM05D000649 ORTHO05D000513 6.3e-17 91.3 86 46.5
THA.LOC104812008 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 6.3e-17 91.3 102 42.2
Glyma.04G014300 Glycine max HOM05D000649 ORTHO05D000513 8.3e-17 90.9 80 50.0
Potri.005G256700 Populus trichocarpa HOM05D000649 ORTHO05D000513 8.3e-17 90.9 96 43.8
RcHm_v2.0_Chr2g0096781 Rosa chinensis HOM05D000649 ORTHO05D000513 8.3e-17 90.9 84 50.0
BcaC08g47242 Brassica carinata HOM05D000649 ORTHO05D000513 1.1e-16 90.5 77 51.9
C06p50700 Brassica napus HOM05D000649 ORTHO05D000513 1.1e-16 90.5 100 46.0
BolC6t40096H Brassica oleracea HOM05D000649 ORTHO05D000513 1.1e-16 90.5 100 46.0
Lj1g0016936 Lotus japonicus HOM05D000649 ORTHO05D000513 1.1e-16 90.5 86 45.3
PSO541G2048 Papaver somniferum HOM05D000649 ORTHO05D000513 1.1e-16 90.5 81 48.1
Dinv05494 Davidia involucrata HOM05D000649 ORTHO05D000513 1.4e-16 90.1 79 46.8
Gohir.D01G086900 Gossypium hirsutum HOM05D000649 ORTHO05D000513 1.4e-16 90.1 104 43.3
Gorai.002G112500 Gossypium raimondii HOM05D000649 ORTHO05D000513 1.4e-16 90.1 104 43.3
Medtr3g116130 Medicago truncatula HOM05D000649 ORTHO05D000513 1.4e-16 90.1 80 50.0
Aa31LG7G5040 Aethionema arabicum HOM05D000649 ORTHO05D000513 1.8e-16 89.7 106 44.3
Gohir.A01G101800 Gossypium hirsutum HOM05D000649 ORTHO05D000513 1.8e-16 89.7 105 43.8
Thecc.08G099600 Theobroma cacao HOM05D000649 ORTHO05D000513 2.4e-16 89.4 79 46.8
Ciclev10003364m.g Citrus clementina HOM05D000649 ORTHO05D000513 3.1e-16 89.0 77 49.4
DCAR_016799 Daucus carota HOM05D000649 ORTHO05D000513 3.1e-16 89.0 76 53.9
Sc26g0004760 Simmondsia chinensis HOM05D000649 ORTHO05D000513 3.1e-16 89.0 77 49.4
Phvul.009G008600 Phaseolus vulgaris HOM05D000649 ORTHO05D000513 4.1e-16 88.6 104 45.2
TWI12G0980 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 4.1e-16 88.6 79 53.2
Aa31LG4G6550 Aethionema arabicum HOM05D000649 ORTHO05D000513 5.3e-16 88.2 78 50.0
BcaC08g47153 Brassica carinata HOM05D000649 ORTHO05D000513 5.3e-16 88.2 77 49.4
ClCG08G009160 Citrullus lanatus HOM05D000649 ORTHO05D000513 5.3e-16 88.2 79 49.4
BraA07t31742Z Brassica rapa HOM05D000649 ORTHO05D000513 9.1e-16 87.4 100 45.0
FAN28G0025 Fragaria x ananassa HOM05D000649 ORTHO05D000513 9.1e-16 87.4 84 51.2
Duzib116G0655 Durio zibethinus HOM05D000649 ORTHO05D000513 1.6e-15 86.7 103 42.7
MD15G1228000 Malus domestica HOM05D000649 ORTHO05D000513 1.6e-15 86.7 73 54.8
MELO3C026514.2 Cucumis melo HOM05D000649 ORTHO05D000513 2.0e-15 86.3 79 48.1
CsaV3_6G035960 Cucumis sativus L. HOM05D000649 ORTHO05D000513 2.0e-15 86.3 79 48.1
SalBow6G0043 Salvia bowleyana HOM05D000649 ORTHO05D000513 2.7e-15 85.9 83 44.6
Duzib093G1313 Durio zibethinus HOM05D000649 ORTHO05D000513 4.5e-15 85.1 81 48.1
Eucgr.I02201 Eucalyptus grandis HOM05D000649 ORTHO05D000513 4.5e-15 85.1 86 46.5
MD00G1148300 Malus domestica HOM05D000649 ORTHO05D000513 4.5e-15 85.1 77 46.8
vmacro21765 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 5.9e-15 84.7 80 50.0
Oeu039086.1 Olea europaea HOM05D000649 ORTHO05D014141 7.7e-15 84.3 100 40.0
SGA_v2.0_scaffold220G42643 Striga asiatica HOM05D000649 ORTHO05D000513 7.7e-15 84.3 97 38.1
DCAR_013943 Daucus carota HOM05D000649 ORTHO05D014141 1.3e-14 83.6 81 48.1
Sed0009990 Sechium edule HOM05D000649 ORTHO05D000513 1.3e-14 83.6 79 45.6
MD02G1108800 Malus domestica HOM05D000649 ORTHO05D000513 1.7e-14 83.2 73 52.1
TPR.G38167 Trifolium pratense HOM05D000649 ORTHO05D000513 1.7e-14 83.2 87 49.4
arahy.Tifrunner.gnm1.ann1.63TST2 Arachis hypogaea HOM05D000649 ORTHO05D000513 2.9e-14 82.4 80 47.5
CDE05G1430 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 5.0e-14 81.6 70 47.1
PGR083G0393 Punica granatum HOM05D000649 ORTHO05D000513 5.0e-14 81.6 78 47.4
Thhalv10008444m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 6.5e-14 81.3 99 43.4
Migut.N02989 Erythranthe guttata HOM05D000649 ORTHO05D000513 8.5e-14 80.9 77 42.9
PSO017G1691 Papaver somniferum HOM05D000649 ORTHO05D000513 8.5e-14 80.9 79 50.6
HanXRQChr16g0532161 Helianthus annuus HOM05D000649 ORTHO05D000513 1.1e-13 80.5 85 44.7
AL1G33900 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 1.9e-13 79.7 100 43.0
PSO170G5065 Papaver somniferum HOM05D000649 ORTHO05D000513 2.5e-13 79.3 79 49.4
ECA246G2133 Erigeron canadensis HOM05D000649 ORTHO05D000513 3.2e-13 79.0 85 42.4
Oeu042506.1 Olea europaea HOM05D000649 ORTHO05D000513 3.2e-13 79.0 95 38.9
Cc07_g12210 Coffea canephora HOM05D000649 ORTHO05D000513 7.2e-13 77.8 72 51.4
ECA238G0875 Erigeron canadensis HOM05D000649 ORTHO05D000513 7.2e-13 77.8 100 38.0
Manes.02G116700 Manihot esculenta HOM05D000649 ORTHO05D000513 7.2e-13 77.8 81 45.7
RcHm_v2.0_Chr7g0216701 Rosa chinensis HOM05D000649 ORTHO05D000513 7.2e-13 77.8 77 48.1
HanXRQChr09g0241921 Helianthus annuus HOM05D000649 ORTHO05D000513 9.4e-13 77.4 79 46.8
ATR0605G253 Amborella trichopoda HOM05D000649 ORTHO05D000513 1.2e-12 77.0 70 44.3
MSTRG.24518 Avicennia marina HOM05D000649 ORTHO05D000513 1.2e-12 77.0 84 38.1
AT1G20880 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 1.6e-12 76.6 100 41.0
Oeu013568.1 Olea europaea HOM05D000649 ORTHO05D000513 2.7e-12 75.9 99 36.4
ECA232G1614 Erigeron canadensis HOM05D000649 ORTHO05D000513 3.6e-12 75.5 79 48.1
Sed0025783 Sechium edule HOM05D000649 ORTHO05D000513 3.6e-12 75.5 79 43.0
unitig_578.g16241 Utricularia gibba HOM05D000649 ORTHO05D000513 3.6e-12 75.5 84 41.7
CDE05G1023 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 4.7e-12 75.1 76 42.1
Eucgr.F03603 Eucalyptus grandis HOM05D000649 ORTHO05D000513 4.7e-12 75.1 85 45.9
PGR031G0467 Punica granatum HOM05D000649 ORTHO05D000513 4.7e-12 75.1 96 37.5
Ciclev10026337m.g Citrus clementina HOM05D000649 ORTHO05D000513 6.1e-12 74.7 81 39.5
Lj4C242G3 Lonicera japonica HOM05D000649 ORTHO05D000513 6.1e-12 74.7 74 44.6
Carub.0001s2035 Capsella rubella HOM05D000649 ORTHO05D000513 8.0e-12 74.3 96 41.7
MBI04_g31210_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 1.0e-11 73.9 53 56.6
CANSAT25G2852 Cannabis sativa HOM05D000649 ORTHO05D000513 1.4e-11 73.6 79 41.8
Oeu030360.2 Olea europaea HOM05D000649 ORTHO05D000513 1.8e-11 73.2 80 43.8
AUR62035172 Chenopodium quinoa HOM05D000649 ORTHO05D000513 6.8e-11 71.2 67 47.8
MSTRG.22081 Avicennia marina HOM05D000649 ORTHO05D000513 8.8e-11 70.9 96 38.5
BraA08t34853Z Brassica rapa HOM05D000649 ORTHO05D000513 8.8e-11 70.9 81 42.0
FAN18G2507 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.2e-10 70.5 86 40.7
DCAR_009860 Daucus carota HOM05D000649 ORTHO05D000513 1.5e-10 70.1 80 45.0
CARHR021310 Cardamine hirsuta HOM05D000649 ORTHO05D000513 2.0e-10 69.7 95 42.1
SEGI_17423 Sequoiadendron giganteum HOM05D000649 ORTHO05D000513 2.6e-10 69.3 80 40.0
FAN13G1717 Fragaria x ananassa HOM05D000649 ORTHO05D000513 3.4e-10 68.9 79 43.0
unitig_8.g4815 Utricularia gibba HOM05D000649 ORTHO05D000513 3.4e-10 68.9 80 40.0
FvH4_5g26080 Fragaria vesca HOM05D000649 ORTHO05D000513 4.4e-10 68.6 79 43.0
FAN04G1603 Fragaria x ananassa HOM05D000649 ORTHO05D000513 5.7e-10 68.2 86 39.5
FAN08G0068 Fragaria x ananassa HOM05D000649 ORTHO05D000513 5.7e-10 68.2 89 40.4
SGA_v2.0_scaffold227G43163 Striga asiatica HOM05D000649 ORTHO05D000513 7.5e-10 67.8 95 33.7
BcaC07g39059 Brassica carinata HOM05D000649 ORTHO05D000513 1.3e-09 67.0 80 38.8
Lj4A240G32 Lonicera japonica HOM05D000649 ORTHO05D000513 1.7e-09 66.6 74 41.9
BcaB03g14296 Brassica carinata HOM05D000649 ORTHO05D000513 2.2e-09 66.2 82 40.2
C08p20430 Brassica napus HOM05D000649 ORTHO05D000513 3.7e-09 65.5 80 37.5
BolC8t49672H Brassica oleracea HOM05D000649 ORTHO05D000513 3.7e-09 65.5 80 37.5
Lsat_1_v5_gn_9_48300 Lactuca sativa HOM05D000649 ORTHO05D000513 3.7e-09 65.5 86 45.3
HPP92_020532 Vanilla planifolia HOM05D000649 ORTHO05D014141 8.3e-09 64.3 63 39.7
BcaB07g32083 Brassica carinata HOM05D000649 ORTHO05D000513 1.1e-08 63.9 83 38.6
Hma1.2p1_0711F.1_g207530 Hydrangea macrophylla HOM05D000649 ORTHO05D014141 1.8e-08 63.2 46 56.5
Eucgr.F01820 Eucalyptus grandis HOM05D000649 ORTHO05D000513 4.1e-08 62.0 77 40.3
BcaC06g34844 Brassica carinata HOM05D000649 ORTHO05D000513 5.4e-08 61.6 55 47.3
C07p22740 Brassica napus HOM05D000649 ORTHO05D000513 5.4e-08 61.6 55 47.3
BolC7t42806H Brassica oleracea HOM05D000649 ORTHO05D000513 5.4e-08 61.6 55 47.3
A07p15430 Brassica napus HOM05D000649 ORTHO05D000513 1.6e-07 60.1 55 47.3
BraA07t29282Z Brassica rapa HOM05D000649 ORTHO05D000513 1.6e-07 60.1 55 47.3
A08p29180 Brassica napus HOM05D000649 ORTHO05D000513 4.5e-07 58.5 81 38.3
PGR119G0463 Punica granatum HOM05D000649 ORTHO05D000513 5.9e-07 58.2 95 37.9
Sp1g18580 Schrenkiella parvula HOM05D000649 ORTHO05D000513 2.9e-06 55.8 47 48.9
Actinidia03908 Actinidia chinensis HOM05D000649 ORTHO05D053340 3.8e-06 55.5 31 80.6
Os02g0714000 Oryza sativa ssp. japonica HOM05D000649 ORTHO05D000513 5.0e-06 55.1 96 33.3
Lsat_1_v5_gn_3_69020 Lactuca sativa HOM05D000649 ORTHO05D000513 8.6e-06 54.3 86 38.4


User provided reference genes

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