Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024843 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 4.0e-131 471.5 241 100.0
CSS0035919 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 1.0e-94 350.5 246 74.0
CSS0035630 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 5.0e-94 348.2 240 74.6
Dinv06101 Davidia involucrata HOM05D000372 ORTHO05D003436 2.1e-92 342.8 236 75.8
Hma1.2p1_0102F.1_g049740 Hydrangea macrophylla HOM05D000372 ORTHO05D003436 4.9e-89 331.6 236 72.5
Dinv19797 Davidia involucrata HOM05D000372 ORTHO05D003436 1.1e-88 330.5 235 72.8
Rhsim07G0169300 Rhododendron simsii HOM05D000372 ORTHO05D003436 1.9e-88 329.7 238 72.3
Thecc.09G009700 Theobroma cacao HOM05D000372 ORTHO05D003436 1.2e-87 327.0 236 70.3
Cfa017850 Carpinus fangiana HOM05D000372 ORTHO05D003436 6.0e-87 324.7 236 69.5
CiPaw.16G070900 Carya illinoinensis HOM05D000372 ORTHO05D003436 7.8e-87 324.3 236 70.8
Lj7C743T9 Lonicera japonica HOM05D000372 ORTHO05D003436 7.8e-87 324.3 234 72.2
Duzib187G1714 Durio zibethinus HOM05D000372 ORTHO05D003436 3.0e-86 322.4 236 70.3
Haze_18342 Corylus avellana HOM05D000372 ORTHO05D003436 5.1e-86 321.6 236 69.1
QL02p017417 Quercus lobata HOM05D000372 ORTHO05D003436 6.6e-86 321.2 236 71.2
Phvul.009G084900 Phaseolus vulgaris HOM05D000372 ORTHO05D003436 8.6e-86 320.9 240 69.6
vmacro05111 Vaccinium macrocarpon HOM05D000372 ORTHO05D003436 8.6e-86 320.9 238 71.8
Prupe.1G400900 Prunus persica HOM05D000372 ORTHO05D003436 3.3e-85 318.9 236 69.5
TAR383G1081 Trochodendron aralioides HOM05D000372 ORTHO05D003436 9.5e-85 317.4 239 69.5
Cpa.g.sc23.44 Carica papaya HOM05D000372 ORTHO05D003436 1.2e-84 317.0 236 67.8
HanXRQChr06g0174111 Helianthus annuus HOM05D000372 ORTHO05D003436 1.6e-84 316.6 235 66.4
VMungo1309G2648 Vigna mungo HOM05D000372 ORTHO05D003436 1.6e-84 316.6 240 69.6
Duzib150G0268 Durio zibethinus HOM05D000372 ORTHO05D003436 2.8e-84 315.8 236 69.5
Lsat_1_v5_gn_3_25440 Lactuca sativa HOM05D000372 ORTHO05D003436 2.8e-84 315.8 235 66.4
Glyma.04G058400 Glycine max HOM05D000372 ORTHO05D003436 3.6e-84 315.5 249 66.3
Lsat_1_v5_gn_5_62200 Lactuca sativa HOM05D000372 ORTHO05D003436 8.1e-84 314.3 240 65.8
Glyma.U003300 Glycine max HOM05D000372 ORTHO05D003436 5.2e-83 311.6 249 65.5
CANSAT25G2139 Cannabis sativa HOM05D000372 ORTHO05D003436 6.8e-83 311.2 234 69.2
Glyma.17G220800 Glycine max HOM05D000372 ORTHO05D003436 8.9e-83 310.8 238 67.6
MD08G1047400 Malus domestica HOM05D000372 ORTHO05D003436 2.0e-82 309.7 236 67.8
Ca_15798_v3 Cicer arietinum L. HOM05D000372 ORTHO05D003436 4.4e-82 308.5 238 68.9
Eucgr.C04019 Eucalyptus grandis HOM05D000372 ORTHO05D003436 4.4e-82 308.5 236 68.2
Phvul.001G043600 Phaseolus vulgaris HOM05D000372 ORTHO05D003436 4.4e-82 308.5 238 67.2
VMungo0647G1491 Vigna mungo HOM05D000372 ORTHO05D003436 7.6e-82 307.8 238 67.2
Gorai.009G066300 Gossypium raimondii HOM05D000372 ORTHO05D003436 9.9e-82 307.4 236 67.4
arahy.Tifrunner.gnm1.ann1.IKLL4G Arachis hypogaea HOM05D000372 ORTHO05D003436 1.3e-81 307.0 236 67.8
Gohir.D05G065500 Gossypium hirsutum HOM05D000372 ORTHO05D003436 1.3e-81 307.0 236 67.4
Gohir.A05G062700 Gossypium hirsutum HOM05D000372 ORTHO05D003436 4.9e-81 305.1 236 67.8
Duzib168G1416 Durio zibethinus HOM05D000372 ORTHO05D003436 1.1e-80 303.9 236 65.7
arahy.Tifrunner.gnm1.ann1.2363PW Arachis hypogaea HOM05D000372 ORTHO05D003436 1.9e-80 303.1 236 66.9
Gohir.D05G065200 Gossypium hirsutum HOM05D000372 ORTHO05D003436 2.4e-80 302.8 236 68.2
Gorai.009G066000 Gossypium raimondii HOM05D000372 ORTHO05D003436 2.4e-80 302.8 236 68.2
Atru.chr7.2608 Acer truncatum HOM05D000372 ORTHO05D003436 3.2e-80 302.4 236 67.4
Gohir.A05G063000 Gossypium hirsutum HOM05D000372 ORTHO05D003436 3.2e-80 302.4 236 67.4
MD15G1046500 Malus domestica HOM05D000372 ORTHO05D003436 3.2e-80 302.4 236 64.4
CSS0002412 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 4.1e-80 302.0 229 73.8
Sed0022125 Sechium edule HOM05D000372 ORTHO05D003436 4.1e-80 302.0 236 66.1
Sopen08g022620 Solanum pennellii HOM05D000372 ORTHO05D003436 4.1e-80 302.0 239 67.8
TWI63G0489 Tripterygium wilfordii HOM05D000372 ORTHO05D003436 4.1e-80 302.0 235 65.1
Solyc08g068960.3 Solanum lycopersicum HOM05D000372 ORTHO05D003436 5.4e-80 301.6 239 67.8
TPR.G21426 Trifolium pratense HOM05D000372 ORTHO05D003436 7.1e-80 301.2 239 67.8
CsaV3_4G036290 Cucumis sativus L. HOM05D000372 ORTHO05D003436 1.6e-79 300.1 236 66.1
Oeu008769.1 Olea europaea HOM05D000372 ORTHO05D003436 1.6e-79 300.1 236 66.9
PGSC0003DMG400029542 Solanum tuberosum HOM05D000372 ORTHO05D003436 1.6e-79 300.1 239 67.4
ECA246G0477 Erigeron canadensis HOM05D000372 ORTHO05D003436 2.7e-79 299.3 238 62.6
Peaxi162Scf00288g01010 Petunia axillaris HOM05D000372 ORTHO05D003436 2.7e-79 299.3 239 66.9
Manes.16G133700 Manihot esculenta HOM05D000372 ORTHO05D003436 4.6e-79 298.5 232 66.8
TWI32G0796 Tripterygium wilfordii HOM05D000372 ORTHO05D003436 6.0e-79 298.1 238 62.2
MELO3C016937.2 Cucumis melo HOM05D000372 ORTHO05D003436 7.8e-79 297.7 236 65.7
Sed0000787 Sechium edule HOM05D000372 ORTHO05D003436 7.8e-79 297.7 236 65.3
ClCG05G016010 Citrullus lanatus HOM05D000372 ORTHO05D003436 1.7e-78 296.6 236 65.3
Ciclev10010162m.g Citrus clementina HOM05D000372 ORTHO05D003436 1.7e-78 296.6 235 65.1
Psat5g033760 Pisum sativum HOM05D000372 ORTHO05D003436 1.7e-78 296.6 238 66.4
CAN.G808.7 Capsicum annuum HOM05D000372 ORTHO05D003436 3.0e-78 295.8 240 66.7
Cc08_g06200 Coffea canephora HOM05D000372 ORTHO05D003436 3.9e-78 295.4 237 66.2
COL.COLO4_19011 Corchorus olitorius HOM05D000372 ORTHO05D003436 3.9e-78 295.4 238 64.3
Potri.006G270500 Populus trichocarpa HOM05D000372 ORTHO05D003436 3.9e-78 295.4 238 63.4
Lj5g0022261 Lotus japonicus HOM05D000372 ORTHO05D003436 5.1e-78 295.0 239 65.3
SalBow8G1746 Salvia bowleyana HOM05D000372 ORTHO05D003436 6.6e-78 294.7 239 64.0
SalBow8G4869 Salvia bowleyana HOM05D000372 ORTHO05D003436 6.6e-78 294.7 239 64.0
arahy.Tifrunner.gnm1.ann1.54Q5ZL Arachis hypogaea HOM05D000372 ORTHO05D003436 8.6e-78 294.3 236 63.6
Nn8g40299 Nelumbo nucifera HOM05D000372 ORTHO05D003436 8.6e-78 294.3 239 64.9
Nitab4.5_0006884g0010 Nicotiana tabacum HOM05D000372 ORTHO05D003436 8.6e-78 294.3 239 66.9
Lj1g0015187 Lotus japonicus HOM05D000372 ORTHO05D003436 1.1e-77 293.9 237 66.2
Nitab4.5_0000502g0160 Nicotiana tabacum HOM05D000372 ORTHO05D003436 1.1e-77 293.9 239 67.4
arahy.Tifrunner.gnm1.ann1.672M4G Arachis hypogaea HOM05D000372 ORTHO05D003436 1.9e-77 293.1 236 63.1
Medtr3g105590 Medicago truncatula HOM05D000372 ORTHO05D003436 1.9e-77 293.1 239 65.3
ECA240G4325 Erigeron canadensis HOM05D000372 ORTHO05D003436 2.5e-77 292.7 240 61.7
Ca_13081_v3 Cicer arietinum L. HOM05D000372 ORTHO05D003436 4.3e-77 292.0 240 65.4
Manes.03G005600 Manihot esculenta HOM05D000372 ORTHO05D003436 4.3e-77 292.0 238 63.0
Sabra06G0210300 Salix brachista HOM05D000372 ORTHO05D003436 4.3e-77 292.0 238 62.6
Psat6g023640 Pisum sativum HOM05D000372 ORTHO05D003436 9.6e-77 290.8 240 65.4
Psat7g193560 Pisum sativum HOM05D000372 ORTHO05D003436 9.6e-77 290.8 240 65.4
Potri.018G011400 Populus trichocarpa HOM05D000372 ORTHO05D003436 9.6e-77 290.8 238 63.0
ATR0580G441 Amborella trichopoda HOM05D000372 ORTHO05D003436 1.2e-76 290.4 239 63.2
Lalb_Chr14g0375411 Lupinus albus HOM05D000372 ORTHO05D003436 2.1e-76 289.7 238 63.9
Aqoxy7G03181 Aquilegia oxysepala HOM05D000372 ORTHO05D003436 1.1e-75 287.3 239 64.4
Oeu023248.1 Olea europaea HOM05D000372 ORTHO05D003436 1.8e-75 286.6 236 64.0
MBI14_g24282_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D003436 5.2e-75 285.0 236 62.7
Lsat_1_v5_gn_3_116581 Lactuca sativa HOM05D000372 ORTHO05D003436 6.8e-75 284.6 235 61.7
RcHm_v2.0_Chr6g0304671 Rosa chinensis HOM05D000372 ORTHO05D003436 8.9e-75 284.3 237 62.9
Migut.E01430 Erythranthe guttata HOM05D000372 ORTHO05D003436 1.2e-74 283.9 235 63.8
HanXRQChr03g0082521 Helianthus annuus HOM05D000372 ORTHO05D003436 1.2e-74 283.9 221 65.6
Medtr1g013360 Medicago truncatula HOM05D000372 ORTHO05D003436 1.5e-74 283.5 241 64.7
DCAR_003039 Daucus carota HOM05D000372 ORTHO05D003436 1.7e-73 280.0 235 61.3
Sabra18G0012300 Salix brachista HOM05D000372 ORTHO05D003436 2.2e-73 279.6 238 60.5
CSS0030725 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 2.9e-73 279.3 235 67.7
FAN27G2462 Fragaria x ananassa HOM05D000372 ORTHO05D003436 4.9e-73 278.5 239 61.9
PGR044G0422 Punica granatum HOM05D000372 ORTHO05D003436 8.4e-73 277.7 239 58.2
SalBow4G3322 Salvia bowleyana HOM05D000372 ORTHO05D003436 2.4e-72 276.2 236 60.6
FAN20G1896 Fragaria x ananassa HOM05D000372 ORTHO05D003436 3.2e-72 275.8 239 61.5
FvH4_2g37120 Fragaria vesca HOM05D000372 ORTHO05D003436 4.2e-72 275.4 239 61.9
FAN15G3394 Fragaria x ananassa HOM05D000372 ORTHO05D003436 4.2e-72 275.4 239 61.5
TPR.G38926 Trifolium pratense HOM05D000372 ORTHO05D003436 1.6e-71 273.5 223 65.0
Sc23g0006190 Simmondsia chinensis HOM05D000372 ORTHO05D003436 1.1e-69 267.3 239 57.3
THA.LOC104819942 Tarenaya hassleriana HOM05D000372 ORTHO05D003436 7.3e-69 264.6 241 57.3
Migut.A00416 Erythranthe guttata HOM05D000372 ORTHO05D003436 1.3e-68 263.8 238 60.9
CSS0018460 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 2.1e-68 263.1 193 74.1
Sc09g0010830 Simmondsia chinensis HOM05D000372 ORTHO05D003436 1.8e-67 260.0 238 55.9
EL10Ac2g02429 Beta vulgaris HOM05D000372 ORTHO05D003436 1.5e-66 256.9 238 56.3
Hund25587 Selenicereus undatus HOM05D000372 ORTHO05D003436 3.4e-66 255.8 235 54.0
TPR.G38882 Trifolium pratense HOM05D000372 ORTHO05D003436 6.4e-65 251.5 221 62.0
DCAR_003038 Daucus carota HOM05D000372 ORTHO05D003436 2.4e-64 249.6 245 53.1
SGA_v2.0_scaffold121G33025 Striga asiatica HOM05D000372 ORTHO05D003436 3.2e-64 249.2 232 59.9
PSO063G4267 Papaver somniferum HOM05D000372 ORTHO05D003436 3.0e-62 242.7 242 57.9
PSO782G1259 Papaver somniferum HOM05D000372 ORTHO05D003436 3.0e-62 242.7 242 57.9
HPP92_011627 Vanilla planifolia HOM05D000372 ORTHO05D003436 1.5e-61 240.4 236 55.5
Actinidia23121 Actinidia chinensis HOM05D000372 ORTHO05D003436 6.2e-60 235.0 240 58.3
SEGI_17810 Sequoiadendron giganteum HOM05D000372 ORTHO05D003436 4.0e-59 232.3 237 52.7
THA.LOC104803327 Tarenaya hassleriana HOM05D000372 ORTHO05D003436 5.8e-58 228.4 239 51.0
AUR62037701 Chenopodium quinoa HOM05D000372 ORTHO05D003436 1.7e-57 226.9 231 51.9
AL6G21260 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 6.0e-55 218.4 239 48.1
Carub.0006s0919 Capsella rubella HOM05D000372 ORTHO05D003436 6.0e-55 218.4 239 47.7
HanXRQChr06g0174121 Helianthus annuus HOM05D000372 ORTHO05D003436 6.0e-55 218.4 230 52.2
Sp6g32740 Schrenkiella parvula HOM05D000372 ORTHO05D003436 6.7e-54 214.9 239 48.1
Thhalv10012606m.g Eutrema salsugineum HOM05D000372 ORTHO05D003436 8.7e-54 214.5 239 48.1
AT5G10720 Arabidopsis thaliana HOM05D000372 ORTHO05D003436 1.5e-53 213.8 239 48.1
Medtr1g014670 Medicago truncatula HOM05D000372 ORTHO05D003436 3.3e-53 212.6 200 61.0
Sp2g22540 Schrenkiella parvula HOM05D000372 ORTHO05D003436 3.3e-53 212.6 240 47.9
BcaB01g05503 Brassica carinata HOM05D000372 ORTHO05D003436 7.4e-53 211.5 239 47.7
A03p04730 Brassica napus HOM05D000372 ORTHO05D003436 7.4e-53 211.5 239 47.3
C03p05430 Brassica napus HOM05D000372 ORTHO05D003436 7.4e-53 211.5 239 47.7
BolC3t13054H Brassica oleracea HOM05D000372 ORTHO05D003436 7.4e-53 211.5 239 47.7
CARHR202600 Cardamine hirsuta HOM05D000372 ORTHO05D003436 9.6e-53 211.1 244 46.7
Sp2g06120 Schrenkiella parvula HOM05D000372 ORTHO05D003436 1.6e-52 210.3 239 48.5
Aa31LG3G16390 Aethionema arabicum HOM05D000372 ORTHO05D003436 2.1e-52 209.9 239 47.3
Aa31LG3G16410 Aethionema arabicum HOM05D000372 ORTHO05D003436 2.8e-52 209.5 239 47.7
BraA03t09813Z Brassica rapa HOM05D000372 ORTHO05D003436 4.8e-52 208.8 240 46.7
BcaC03g13326 Brassica carinata HOM05D000372 ORTHO05D003436 8.1e-52 208.0 241 47.3
BcaC04g19290 Brassica carinata HOM05D000372 ORTHO05D003436 8.1e-52 208.0 239 46.0
BolC2t06420H Brassica oleracea HOM05D000372 ORTHO05D003436 8.1e-52 208.0 241 47.3
C09p66090 Brassica napus HOM05D000372 ORTHO05D003436 1.1e-51 207.6 239 46.0
BolC9t59429H Brassica oleracea HOM05D000372 ORTHO05D003436 1.1e-51 207.6 239 46.0
BraA10t44741Z Brassica rapa HOM05D000372 ORTHO05D003436 1.1e-51 207.6 239 46.0
A10p26890 Brassica napus HOM05D000372 ORTHO05D003436 1.8e-51 206.8 239 46.0
C02p04600 Brassica napus HOM05D000372 ORTHO05D003436 2.4e-51 206.5 241 46.9
A02p00610 Brassica napus HOM05D000372 ORTHO05D003436 1.5e-50 203.8 241 46.5
BraA02t05044Z Brassica rapa HOM05D000372 ORTHO05D003436 1.5e-50 203.8 241 46.5
Ah.10g025030 Amaranthus hybridus HOM05D000372 ORTHO05D003436 2.0e-50 203.4 202 53.0
BcaB05g21500 Brassica carinata HOM05D000372 ORTHO05D003436 2.0e-50 203.4 241 47.7
BcaB01g06273 Brassica carinata HOM05D000372 ORTHO05D003436 2.6e-50 203.0 239 43.5
AUR62020299 Chenopodium quinoa HOM05D000372 ORTHO05D003436 1.0e-49 201.1 171 59.6
Rhsim07G0169400 Rhododendron simsii HOM05D000372 ORTHO05D003436 3.8e-49 199.1 155 67.1
A03p04720 Brassica napus HOM05D000372 ORTHO05D003436 8.4e-49 198.0 239 48.1
BraA03t09812Z Brassica rapa HOM05D000372 ORTHO05D003436 8.4e-49 198.0 239 48.1
AL6G21200 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 2.5e-48 196.4 233 46.8
Migut.E00913 Erythranthe guttata HOM05D000372 ORTHO05D003436 4.2e-48 195.7 210 52.4
BcaB01g06275 Brassica carinata HOM05D000372 ORTHO05D003436 1.2e-47 194.1 243 46.1
BcaB08g37314 Brassica carinata HOM05D000372 ORTHO05D003436 1.8e-46 190.3 239 44.8
GSVIVG01033164001 Vitis vinifera HOM05D000372 ORTHO05D003436 3.0e-46 189.5 236 47.5
Os06g0654300 Oryza sativa ssp. japonica HOM05D000372 ORTHO05D003436 6.3e-44 181.8 239 42.7
Psat6g023560 Pisum sativum HOM05D000372 ORTHO05D003436 1.4e-43 180.6 199 53.8
PSO170G2710 Papaver somniferum HOM05D000372 ORTHO05D003436 5.9e-42 175.3 192 55.7
Sc23g0007090 Simmondsia chinensis HOM05D000372 ORTHO05D003436 5.0e-41 172.2 166 54.8
Zm00001eb389570 Zea mays HOM05D000372 ORTHO05D003436 3.6e-39 166.0 241 40.2
Zm00001eb274910 Zea mays HOM05D000372 ORTHO05D003436 1.0e-38 164.5 234 41.0
Aa31sc15G100 Aethionema arabicum HOM05D000372 ORTHO05D003436 2.3e-38 163.3 231 43.3
CARHR155340 Cardamine hirsuta HOM05D000372 ORTHO05D003436 4.8e-36 155.6 230 41.3
AT5G10680 Arabidopsis thaliana HOM05D000372 ORTHO05D003436 2.9e-33 146.4 165 47.9
Oeu008770.2 Olea europaea HOM05D000372 ORTHO05D003436 3.8e-33 146.0 236 39.4
Mapoly0139s0010 Marchantia polymorpha HOM05D000372 ORTHO05D003436 3.3e-21 106.3 230 35.2
arahy.Tifrunner.gnm1.ann1.CV2UMV Arachis hypogaea HOM05D000372 ORTHO05D003436 2.2e-20 103.6 91 62.6
Glyma.18G115250 Glycine max HOM05D000372 ORTHO05D003436 1.7e-17 94.0 75 60.0
SMO271G0024 Selaginella moellendorffii HOM05D000372 ORTHO05D003436 1.4e-14 84.3 181 34.3
Pp3c1_29920 Physcomitrium patens HOM05D000372 ORTHO05D003436 4.1e-11 72.8 242 28.1
BcaB01g05505 Brassica carinata HOM05D000372 ORTHO05D003436 7.0e-11 72.0 68 50.0
Pp3c1_9540 Physcomitrium patens HOM05D000372 ORTHO05D003436 3.5e-10 69.7 236 27.5
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 5.9e-10 68.9 85 50.6
Pp3c2_36790 Physcomitrium patens HOM05D000372 ORTHO05D003436 2.2e-09 67.0 238 27.7
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 2.9e-09 66.6 62 50.0


User provided reference genes

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