Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024839 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 1.4e-53 212.6 102 100.0
CSS0006931 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 8.2e-46 186.8 92 94.6
Dinv28425 Davidia involucrata HOM05D001607 ORTHO05D001893 2.0e-44 182.2 92 92.4
Actinidia34121 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.5e-42 176.0 92 89.1
TAR375G0166 Trochodendron aralioides HOM05D001607 ORTHO05D001893 9.4e-42 173.3 92 85.9
Actinidia25880 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.2e-41 172.9 92 88.0
Lj1A999G29 Lonicera japonica HOM05D001607 ORTHO05D001893 1.0e-40 169.9 92 84.8
Rhsim03G0187200 Rhododendron simsii HOM05D001607 ORTHO05D001893 2.3e-40 168.7 92 83.7
Potri.012G142200 Populus trichocarpa HOM05D001607 ORTHO05D001893 3.0e-40 168.3 92 80.4
Manes.06G148500 Manihot esculenta HOM05D001607 ORTHO05D001893 4.0e-40 167.9 92 80.4
Potri.015G145300 Populus trichocarpa HOM05D001607 ORTHO05D001893 5.2e-40 167.5 92 80.4
vmacro06666 Vaccinium macrocarpon HOM05D001607 ORTHO05D001893 8.8e-40 166.8 92 82.6
Thecc.03G178600 Theobroma cacao HOM05D001607 ORTHO05D001893 1.5e-39 166.0 92 80.4
Sabra12G0106800 Salix brachista HOM05D001607 ORTHO05D001893 2.0e-39 165.6 92 78.3
Nn1g01507 Nelumbo nucifera HOM05D001607 ORTHO05D001893 4.4e-39 164.5 92 80.4
CANSAT21G1423 Cannabis sativa HOM05D001607 ORTHO05D001893 5.7e-39 164.1 92 78.3
Gohir.A11G010500 Gossypium hirsutum HOM05D001607 ORTHO05D001893 5.7e-39 164.1 92 78.3
Gohir.D11G009700 Gossypium hirsutum HOM05D001607 ORTHO05D001893 5.7e-39 164.1 92 78.3
Gorai.007G011200 Gossypium raimondii HOM05D001607 ORTHO05D001893 5.7e-39 164.1 92 78.3
CAN.G307.24 Capsicum annuum HOM05D001607 ORTHO05D001893 9.7e-39 163.3 94 77.7
MD07G1272600 Malus domestica HOM05D001607 ORTHO05D001893 9.7e-39 163.3 92 77.2
Nitab4.5_0001842g0120 Nicotiana tabacum HOM05D001607 ORTHO05D001893 9.7e-39 163.3 92 79.3
Duzib205G1855 Durio zibethinus HOM05D001607 ORTHO05D001893 1.3e-38 162.9 92 78.3
Nitab4.5_0005845g0050 Nicotiana tabacum HOM05D001607 ORTHO05D001893 1.3e-38 162.9 92 79.3
GSVIVG01028929001 Vitis vinifera HOM05D001607 ORTHO05D001893 1.3e-38 162.9 90 83.3
DCAR_001509 Daucus carota HOM05D001607 ORTHO05D001893 1.7e-38 162.5 91 82.4
Migut.F00330 Erythranthe guttata HOM05D001607 ORTHO05D001893 1.7e-38 162.5 92 77.2
Peaxi162Scf00444g00717 Petunia axillaris HOM05D001607 ORTHO05D001893 1.7e-38 162.5 94 76.6
Prupe.2G295900 Prunus persica HOM05D001607 ORTHO05D001893 1.7e-38 162.5 92 76.1
CiPaw.04G071800 Carya illinoinensis HOM05D001607 ORTHO05D001893 2.2e-38 162.2 97 76.3
MBI18_g25519_MAGBIO Magnolia biondii HOM05D001607 ORTHO05D001893 2.8e-38 161.8 92 77.2
MD01G1203100 Malus domestica HOM05D001607 ORTHO05D001893 4.8e-38 161.0 92 75.0
COL.COLO4_14332 Corchorus olitorius HOM05D001607 ORTHO05D001893 6.3e-38 160.6 92 75.0
Atru.chr1.433 Acer truncatum HOM05D001607 ORTHO05D001893 8.2e-38 160.2 92 78.3
PGR042G0514 Punica granatum HOM05D001607 ORTHO05D001893 8.2e-38 160.2 92 78.3
Aqoxy1G00239 Aquilegia oxysepala HOM05D001607 ORTHO05D001893 1.4e-37 159.5 92 75.0
MSTRG.27107 Avicennia marina HOM05D001607 ORTHO05D001893 1.4e-37 159.5 92 77.2
Ciclev10004167m.g Citrus clementina HOM05D001607 ORTHO05D001893 1.4e-37 159.5 92 75.0
Sc25g0000580 Simmondsia chinensis HOM05D001607 ORTHO05D001893 1.4e-37 159.5 92 76.1
THA.LOC104812206 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 2.4e-37 158.7 95 71.6
Cpa.g.sc107.64 Carica papaya HOM05D001607 ORTHO05D001893 3.1e-37 158.3 92 73.9
PSO478G2555 Papaver somniferum HOM05D001607 ORTHO05D001893 3.1e-37 158.3 91 78.0
PSO782G3230 Papaver somniferum HOM05D001607 ORTHO05D001893 3.1e-37 158.3 91 76.9
TWI39G1280 Tripterygium wilfordii HOM05D001607 ORTHO05D001893 4.1e-37 157.9 92 76.1
Duzib068G0651 Durio zibethinus HOM05D001607 ORTHO05D001893 5.3e-37 157.5 92 75.0
FAN03G1039 Fragaria x ananassa HOM05D001607 ORTHO05D001893 5.3e-37 157.5 92 75.0
FAN03G1056 Fragaria x ananassa HOM05D001607 ORTHO05D001893 5.3e-37 157.5 92 75.0
FAN10G1529 Fragaria x ananassa HOM05D001607 ORTHO05D001893 5.3e-37 157.5 92 75.0
FAN10G2541 Fragaria x ananassa HOM05D001607 ORTHO05D001893 5.3e-37 157.5 92 75.0
RcHm_v2.0_Chr1g0377641 Rosa chinensis HOM05D001607 ORTHO05D001893 9.1e-37 156.8 92 75.0
FvH4_7g29630 Fragaria vesca HOM05D001607 ORTHO05D001893 1.2e-36 156.4 92 73.9
FAN06G1924 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.2e-36 156.4 92 73.9
FAN06G4239 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.2e-36 156.4 92 73.9
Gohir.A08G099300 Gossypium hirsutum HOM05D001607 ORTHO05D001893 1.2e-36 156.4 92 75.0
Sopen03g004440 Solanum pennellii HOM05D001607 ORTHO05D001893 1.6e-36 156.0 92 77.2
Sopen03g004450 Solanum pennellii HOM05D001607 ORTHO05D001893 1.6e-36 156.0 92 77.2
SGA_v2.0_scaffold44G16733 Striga asiatica HOM05D001607 ORTHO05D001893 1.6e-36 156.0 91 73.6
SalBow4G1573 Salvia bowleyana HOM05D001607 ORTHO05D001893 2.0e-36 155.6 97 72.2
CiPaw.03G107800 Carya illinoinensis HOM05D001607 ORTHO05D001893 3.5e-36 154.8 97 75.3
FAN01G0648 Fragaria x ananassa HOM05D001607 ORTHO05D001893 3.5e-36 154.8 92 73.9
Gorai.004G118300 Gossypium raimondii HOM05D001607 ORTHO05D001893 3.5e-36 154.8 92 75.0
Ah.07g207010 Amaranthus hybridus HOM05D001607 ORTHO05D001893 4.5e-36 154.5 95 72.6
Cfa022712 Carpinus fangiana HOM05D001607 ORTHO05D001893 4.5e-36 154.5 97 73.2
Haze_13673 Corylus avellana HOM05D001607 ORTHO05D001893 5.9e-36 154.1 97 73.2
ECA233G5223 Erigeron canadensis HOM05D001607 ORTHO05D001893 5.9e-36 154.1 92 75.0
Lsat_1_v5_gn_8_8420 Lactuca sativa HOM05D001607 ORTHO05D001893 5.9e-36 154.1 92 76.1
Eucgr.A02780 Eucalyptus grandis HOM05D001607 ORTHO05D001893 7.7e-36 153.7 92 75.0
Os02g0664300 Oryza sativa ssp. japonica HOM05D001607 ORTHO05D001893 7.7e-36 153.7 92 73.9
ClCG01G004440 Citrullus lanatus HOM05D001607 ORTHO05D001893 1.7e-35 152.5 92 71.7
Eucgr.A02778 Eucalyptus grandis HOM05D001607 ORTHO05D001893 2.2e-35 152.1 92 72.8
Hund04758 Selenicereus undatus HOM05D001607 ORTHO05D001893 2.2e-35 152.1 92 70.7
HanXRQChr10g0304171 Helianthus annuus HOM05D001607 ORTHO05D001893 2.9e-35 151.8 92 75.0
Rhsim05G0128400 Rhododendron simsii HOM05D001607 ORTHO05D001893 3.8e-35 151.4 91 79.1
Zm00001eb249900 Zea mays HOM05D001607 ORTHO05D001893 3.8e-35 151.4 92 71.7
ATR0680G301 Amborella trichopoda HOM05D001607 ORTHO05D001893 5.0e-35 151.0 92 70.7
MELO3C005470.2 Cucumis melo HOM05D001607 ORTHO05D001893 5.0e-35 151.0 92 69.6
CARHR227400 Cardamine hirsuta HOM05D001607 ORTHO05D001893 6.5e-35 150.6 92 69.6
AUR62015965 Chenopodium quinoa HOM05D001607 ORTHO05D001893 6.5e-35 150.6 95 71.6
AUR62021171 Chenopodium quinoa HOM05D001607 ORTHO05D001893 6.5e-35 150.6 95 71.6
Sed0028131 Sechium edule HOM05D001607 ORTHO05D001893 6.5e-35 150.6 92 70.7
EL10Ac3g05618 Beta vulgaris HOM05D001607 ORTHO05D001893 8.5e-35 150.2 92 72.8
BcaNung04147 Brassica carinata HOM05D001607 ORTHO05D001893 1.1e-34 149.8 92 68.5
CsaV3_5G004660 Cucumis sativus L. HOM05D001607 ORTHO05D001893 1.1e-34 149.8 92 69.6
Medtr1g101030 Medicago truncatula HOM05D001607 ORTHO05D001893 1.1e-34 149.8 90 76.7
BcaC09g51300 Brassica carinata HOM05D001607 ORTHO05D001893 1.9e-34 149.1 92 68.5
C01p14680 Brassica napus HOM05D001607 ORTHO05D001893 1.9e-34 149.1 92 68.5
BolC1t01419H Brassica oleracea HOM05D001607 ORTHO05D001893 1.9e-34 149.1 92 68.5
HPP92_011359 Vanilla planifolia HOM05D001607 ORTHO05D001893 1.9e-34 149.1 93 68.8
BraA03t14327Z Brassica rapa HOM05D001607 ORTHO05D001893 2.5e-34 148.7 92 67.4
Thhalv10024222m.g Eutrema salsugineum HOM05D001607 ORTHO05D001893 2.5e-34 148.7 92 67.4
AT4G20850 Arabidopsis thaliana HOM05D001607 ORTHO05D001893 3.2e-34 148.3 92 69.6
A01p12270 Brassica napus HOM05D001607 ORTHO05D001893 4.2e-34 147.9 92 67.4
BraA01t01171Z Brassica rapa HOM05D001607 ORTHO05D001893 4.2e-34 147.9 92 67.4
Ca_10751_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 4.2e-34 147.9 90 74.4
BcaNung05068 Brassica carinata HOM05D001607 ORTHO05D001893 5.5e-34 147.5 92 66.3
A03p52520 Brassica napus HOM05D001607 ORTHO05D001893 5.5e-34 147.5 92 66.3
C07p50960 Brassica napus HOM05D001607 ORTHO05D001893 5.5e-34 147.5 92 66.3
BolC7t45597H Brassica oleracea HOM05D001607 ORTHO05D001893 5.5e-34 147.5 92 66.3
Aa31LG6G2920 Aethionema arabicum HOM05D001607 ORTHO05D001893 7.2e-34 147.1 91 69.2
AL7G33300 Arabidopsis lyrata HOM05D001607 ORTHO05D001893 7.2e-34 147.1 92 69.6
Carub.0007s2059 Capsella rubella HOM05D001607 ORTHO05D001893 7.2e-34 147.1 92 69.6
Psat6g198240 Pisum sativum HOM05D001607 ORTHO05D001893 9.4e-34 146.7 90 75.6
Sp7g18940 Schrenkiella parvula HOM05D001607 ORTHO05D001893 9.4e-34 146.7 92 67.4
TPR.G26981 Trifolium pratense HOM05D001607 ORTHO05D001893 9.4e-34 146.7 90 74.4
Lalb_Chr02g0141081 Lupinus albus HOM05D001607 ORTHO05D001893 2.1e-33 145.6 92 73.9
THA.LOC104818559 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 2.1e-33 145.6 93 67.7
THA.LOC104824860 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 2.1e-33 145.6 93 67.7
unitig_46.g18794 Utricularia gibba HOM05D001607 ORTHO05D001893 2.1e-33 145.6 92 69.6
Lj2g0000053 Lotus japonicus HOM05D001607 ORTHO05D001893 3.6e-33 144.8 92 69.6
Lj5g0010480 Lotus japonicus HOM05D001607 ORTHO05D001893 6.1e-33 144.1 97 69.1
THA.LOC104824854 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 6.1e-33 144.1 95 62.1
arahy.Tifrunner.gnm1.ann1.2YSW8E Arachis hypogaea HOM05D001607 ORTHO05D001893 8.0e-33 143.7 97 63.9
arahy.Tifrunner.gnm1.ann1.CMMP9X Arachis hypogaea HOM05D001607 ORTHO05D001893 1.0e-32 143.3 92 70.7
arahy.Tifrunner.gnm1.ann1.M3PRP5 Arachis hypogaea HOM05D001607 ORTHO05D001893 1.4e-32 142.9 97 64.9
Lalb_Chr19g0130771 Lupinus albus HOM05D001607 ORTHO05D001893 1.8e-32 142.5 97 63.9
arahy.Tifrunner.gnm1.ann1.GK85WT Arachis hypogaea HOM05D001607 ORTHO05D001893 2.3e-32 142.1 92 69.6
Phvul.004G114200 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 3.0e-32 141.7 97 63.9
arahy.Tifrunner.gnm1.ann1.7Y045D Arachis hypogaea HOM05D001607 ORTHO05D001893 5.2e-32 141.0 88 72.7
arahy.Tifrunner.gnm1.ann1.I8PQ41 Arachis hypogaea HOM05D001607 ORTHO05D001893 5.2e-32 141.0 88 72.7
Glyma.16G182500 Glycine max HOM05D001607 ORTHO05D001893 5.2e-32 141.0 97 63.9
SGA_v2.0_scaffold60G21061 Striga asiatica HOM05D001607 ORTHO05D001893 5.2e-32 141.0 92 63.0
VMungo0464G1130 Vigna mungo HOM05D001607 ORTHO05D001893 1.5e-31 139.4 97 62.9
Glyma.09G137200 Glycine max HOM05D001607 ORTHO05D001893 2.6e-31 138.7 97 61.9
arahy.Tifrunner.gnm1.ann1.L95KH7 Arachis hypogaea HOM05D001607 ORTHO05D001893 4.4e-31 137.9 88 71.6
Ca_05504_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 4.4e-31 137.9 97 60.8
Ca_05507_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 4.4e-31 137.9 97 60.8
Nitab4.5_0003131g0040 Nicotiana tabacum HOM05D001607 ORTHO05D001893 5.7e-31 137.5 92 70.7
VMungo0720G1584 Vigna mungo HOM05D001607 ORTHO05D001893 7.5e-31 137.1 94 67.0
Glyma.10G234500 Glycine max HOM05D001607 ORTHO05D001893 2.8e-30 135.2 97 67.0
Phvul.007G071600 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 4.8e-30 134.4 94 66.0
Psat0s3405g0040 Pisum sativum HOM05D001607 ORTHO05D001893 8.3e-30 133.7 93 63.4
SEGI_13029 Sequoiadendron giganteum HOM05D001607 ORTHO05D001893 8.3e-30 133.7 95 58.9
Medtr0025s0060 Medicago truncatula HOM05D001607 ORTHO05D001893 1.8e-29 132.5 97 56.7
HPP92_011358 Vanilla planifolia HOM05D001607 ORTHO05D001893 1.8e-29 132.5 90 62.2
TPR.G8164 Trifolium pratense HOM05D001607 ORTHO05D001893 1.2e-28 129.8 97 56.7
Pp3c7_23000 Physcomitrium patens HOM05D001607 ORTHO05D001893 2.5e-26 122.1 87 62.1
AagrBONN_evm.TU.Sc2ySwM_344.3434 Anthoceros agrestis HOM05D001607 ORTHO05D001893 3.6e-25 118.2 86 58.1
SMO367G0172 Selaginella moellendorffii HOM05D001607 ORTHO05D001893 3.0e-24 115.2 89 57.3
Mapoly0069s0029 Marchantia polymorpha HOM05D001607 ORTHO05D001893 2.0e-23 112.5 87 57.5
Pp3c2_32420 Physcomitrium patens HOM05D001607 ORTHO05D001893 1.7e-22 109.4 87 56.3
Gohir.D08G110716 Gossypium hirsutum HOM05D001607 ORTHO05D001893 9.2e-13 77.0 39 79.5
arahy.Tifrunner.gnm1.ann1.HZL4S5 Arachis hypogaea HOM05D001607 ORTHO05D001893 2.0e-12 75.9 97 42.3
Cre16.g675350 Chlamydomonas reinhardtii HOM05D001607 ORTHO05D001893 8.9e-08 60.5 89 36.0


User provided reference genes

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