Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 0.0e+00 1511.9 851 100.0
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 4.3e-188 662.5 883 55.5
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 2.1e-187 660.2 927 51.6
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 8.6e-173 611.7 965 47.7
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 5.1e-157 559.3 857 48.3
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 3.9e-149 533.1 888 46.5
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 4.2e-143 513.1 863 46.6
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 7.9e-134 482.3 918 41.1
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 1.0e-133 481.9 918 41.1
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 1.6e-131 474.6 874 42.2
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.6e-126 458.0 897 44.8
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.3e-123 448.4 886 42.6
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.1e-114 418.7 970 38.2
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 8.0e-110 402.5 890 37.9
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 3.9e-109 400.2 885 39.4
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 3.7e-107 393.7 931 41.5
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.1e-106 392.1 943 36.9
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.9e-104 384.0 910 36.4
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 3.8e-104 383.6 943 36.7
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 2.5e-103 380.9 946 36.2
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.1e-102 377.9 891 39.1
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 1.8e-101 374.8 907 39.3
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 3.1e-98 364.0 917 37.0
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 4.1e-98 363.6 907 35.1
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 2.9e-96 357.5 1031 35.5
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.9e-95 354.8 890 34.7
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 7.2e-95 352.8 904 37.3
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 8.0e-94 349.4 889 36.9
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 3.0e-93 347.4 881 36.5
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 5.9e-89 333.2 878 36.2
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 1.0e-88 332.4 861 35.4
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 3.8e-88 330.5 930 34.7
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 3.8e-88 330.5 869 34.8
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 2.1e-86 324.7 882 36.7
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 3.0e-85 320.9 826 38.9
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 4.0e-85 320.5 906 34.5
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 5.4e-82 310.1 932 36.8
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 7.8e-81 306.2 930 35.1
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 6.6e-80 303.1 916 35.0
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 2.8e-78 297.7 880 34.2
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 8.0e-78 296.2 914 38.1
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 1.8e-77 295.0 919 37.3
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.0e-76 291.6 900 33.1
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.6e-76 291.2 926 33.9
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 5.8e-76 290.0 897 33.8
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 9.8e-76 289.3 901 33.6
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 2.2e-75 288.1 852 31.2
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 2.2e-75 288.1 891 33.9
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 3.7e-75 287.3 873 34.5
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.4e-74 284.6 888 33.7
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 7.8e-73 279.6 894 33.0
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.7e-72 278.5 922 33.5
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 3.9e-72 277.3 901 32.5
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 3.9e-72 277.3 864 33.7
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 3.9e-72 277.3 864 33.7
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.5e-71 275.4 877 33.8
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 7.3e-71 273.1 895 35.4
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 1.6e-70 271.9 888 34.2
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 4.7e-70 270.4 937 35.5
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 2.0e-68 265.0 861 33.3
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 5.8e-68 263.5 864 35.2
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 7.1e-66 256.5 881 31.9
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 2.1e-65 255.0 902 32.6
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 6.0e-65 253.4 979 32.4
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 6.6e-64 250.0 855 32.5
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 8.6e-64 249.6 890 33.6
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 9.5e-63 246.1 951 34.2
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 1.6e-62 245.4 953 31.9
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 4.7e-62 243.8 929 31.2
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 2.3e-61 241.5 942 30.7
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 4.0e-61 240.7 854 30.6
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 5.2e-61 240.4 892 32.2
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.5e-60 238.8 908 31.6
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 7.6e-60 236.5 528 39.2
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 2.2e-59 235.0 901 31.4
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 2.2e-59 235.0 924 30.5
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 2.9e-59 234.6 917 32.0
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.9e-59 234.6 817 33.0
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 2.9e-59 234.6 912 31.4
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 5.4e-58 230.3 927 30.6
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.2e-57 229.2 1001 30.6
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 7.3e-55 219.9 912 30.4
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 6.2e-54 216.9 856 29.3
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 4.0e-53 214.2 907 33.0
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 8.9e-53 213.0 859 29.8
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 2.0e-52 211.8 934 29.0
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 4.9e-51 207.2 974 31.7
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 8.4e-51 206.5 831 31.6
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 7.1e-50 203.4 877 31.9
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 3.0e-48 198.0 839 31.7
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 1.9e-47 195.3 850 30.0
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 1.3e-46 192.6 988 27.1
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.8e-45 188.7 165 64.8
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 5.3e-45 187.2 908 29.3
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.0e-40 172.9 916 30.9
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 2.3e-40 171.8 894 30.1
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 4.3e-39 167.5 868 28.7
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.3e-38 166.0 866 29.3
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.6e-38 165.6 864 29.6
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 2.6e-36 158.3 357 38.9
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 3.8e-35 154.5 882 28.1
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 3.8e-35 154.5 902 29.8
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 8.4e-35 153.3 958 27.3
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.1e-34 152.9 905 27.7
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 3.2e-34 151.4 862 28.1
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 5.5e-34 150.6 894 27.4
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 2.3e-32 145.2 885 26.9
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 5.1e-32 144.1 513 31.4
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 3.1e-29 134.8 930 26.9
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 4.0e-29 134.4 939 26.8
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 2.0e-28 132.1 866 27.1
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 2.6e-28 131.7 877 26.7
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.7e-27 129.0 888 27.9
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 8.4e-27 126.7 933 27.0
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 4.2e-26 124.4 280 35.4
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 4.2e-26 124.4 377 34.5
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 1.2e-25 122.9 864 26.3
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 2.7e-25 121.7 795 27.2
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 6.0e-25 120.6 939 25.1
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 3.0e-24 118.2 912 26.1
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 3.0e-24 118.2 947 25.0
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 5.1e-24 117.5 317 34.7
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 4.3e-23 114.4 891 25.8
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 4.3e-23 114.4 269 38.3
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 7.4e-23 113.6 872 25.5
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 1.6e-22 112.5 307 36.8
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 5.0e-19 100.9 255 38.0
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 1.9e-18 99.0 184 45.1
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 7.2e-18 97.1 76 68.4
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 2.1e-17 95.5 240 37.1
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.5e-17 94.7 131 47.3
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 6.7e-16 90.5 86 59.3
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.1e-15 89.7 205 37.6
Nitab4.5_0000575g0060 Nicotiana tabacum HOM05D004628 ORTHO05D005166 4.8e-14 84.3 162 43.2
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 8.2e-14 83.6 131 43.5
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 1.8e-13 82.4 963 24.3
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.1e-13 81.6 112 49.1
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 2.0e-12 79.0 203 36.0
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 6.5e-11 73.9 871 25.1
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 8.5e-11 73.6 85 56.5
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 2.5e-10 72.0 894 24.6
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 2.7e-09 68.6 785 27.1
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 4.6e-09 67.8 981 24.4
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.4e-08 66.2 44 68.2
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.0e-08 65.1 43 72.1
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 2.0e-07 62.4 83 50.6
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 5.7e-07 60.8 211 29.9
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 5.7e-07 60.8 105 45.7
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 7.4e-07 60.5 225 30.7
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 7.4e-07 60.5 209 30.1
arahy.Tifrunner.gnm1.ann1.Z9P2D3 Arachis hypogaea HOM05D004628 ORTHO05D005166 3.7e-06 58.2 100 44.0
CAN.G1164.3 Capsicum annuum HOM05D009846 ORTHO05D002235 3.7e-06 58.2 86 48.8
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 3.7e-06 58.2 188 31.4
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 3.7e-06 58.2 254 31.1
VMungo1215G3006 Vigna mungo HOM05D004628 ORTHO05D005166 3.7e-06 58.2 77 50.6


User provided reference genes

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