Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024821 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 4.9e-129 464.5 244 100.0
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 1.9e-128 462.6 244 96.3
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 2.8e-44 183.0 256 49.6
Actinidia04866 Actinidia chinensis HOM05D008369 ORTHO05D005932 8.3e-44 181.4 241 49.8
Dinv10658 Davidia involucrata HOM05D008369 ORTHO05D005932 2.7e-34 149.8 240 47.9
Dinv38746 Davidia involucrata HOM05D008369 ORTHO05D005932 7.8e-34 148.3 252 46.8
vmacro17570 Vaccinium macrocarpon HOM05D008369 ORTHO05D005932 8.0e-31 138.3 228 42.1
Cfa019277 Carpinus fangiana HOM05D008369 ORTHO05D005932 5.2e-22 109.0 210 41.0
MD06G1197700 Malus domestica HOM05D008369 ORTHO05D005932 1.7e-20 104.0 207 41.5
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 4.1e-19 99.4 229 38.4
MD14G1205100 Malus domestica HOM05D008369 ORTHO05D005932 1.2e-18 97.8 206 39.8
RcHm_v2.0_Chr7g0182121 Rosa chinensis HOM05D008369 ORTHO05D005932 1.2e-18 97.8 191 39.3
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 2.1e-18 97.1 190 38.4
Gohir.A11G032000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 7.8e-18 95.1 237 35.4
FAN13G2099 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.7e-17 94.0 203 36.0
Gohir.D11G035400 Gossypium hirsutum HOM05D008369 ORTHO05D005932 1.7e-17 94.0 236 33.9
FvH4_5g14530 Fragaria vesca HOM05D008369 ORTHO05D005932 3.9e-17 92.8 190 36.8
FAN08G2699 Fragaria x ananassa HOM05D008369 ORTHO05D005932 3.9e-17 92.8 189 37.6
Ciclev10022335m.g Citrus clementina HOM05D008369 ORTHO05D005932 3.3e-16 89.7 191 34.6
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 4.3e-16 89.4 234 35.5
Gorai.007G038200 Gossypium raimondii HOM05D008369 ORTHO05D005932 7.3e-16 88.6 237 33.3
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 2.1e-15 87.0 231 32.5
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 2.8e-15 86.7 227 33.0
Haze_07652 Corylus avellana HOM05D008369 ORTHO05D005932 3.6e-15 86.3 187 35.3
QL10p017723 Quercus lobata HOM05D008369 ORTHO05D005932 2.6e-13 80.1 224 34.8
Prupe.5G198500 Prunus persica HOM05D008369 ORTHO05D005932 5.8e-13 79.0 202 34.2
Dinv34096 Davidia involucrata HOM05D009095 ORTHO05D005932 7.5e-13 78.6 191 38.7
DCAR_026037 Daucus carota HOM05D008369 ORTHO05D005932 1.7e-12 77.4 161 36.0
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 2.9e-12 76.6 186 34.9
GSVIVG01007962001 Vitis vinifera HOM05D008369 ORTHO05D005932 1.1e-11 74.7 169 38.5
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 1.4e-11 74.3 188 35.6
Nn3g17332 Nelumbo nucifera HOM05D009095 ORTHO05D005932 1.4e-11 74.3 238 32.8
Thecc.02G339500 Theobroma cacao HOM05D009095 ORTHO05D005932 1.9e-11 73.9 178 37.1
Migut.D01759 Erythranthe guttata HOM05D012087 ORTHO05D005932 2.4e-11 73.6 249 31.3
Sed0006867 Sechium edule HOM05D008369 ORTHO05D005932 5.4e-11 72.4 221 33.9
CiPaw.06G088700 Carya illinoinensis HOM05D009095 ORTHO05D005932 1.6e-10 70.9 188 34.6
Nitab4.5_0001211g0150 Nicotiana tabacum HOM05D012087 ORTHO05D005932 2.1e-10 70.5 230 30.4
vmacro01343 Vaccinium macrocarpon HOM05D009095 ORTHO05D005932 2.1e-10 70.5 214 31.8
Lj9A467T87 Lonicera japonica HOM05D008369 ORTHO05D005932 7.8e-10 68.6 231 32.9
Lsat_1_v5_gn_1_14361 Lactuca sativa HOM05D008369 ORTHO05D005932 1.0e-09 68.2 218 34.4
Ciclev10032785m.g Citrus clementina HOM05D009095 ORTHO05D005932 2.3e-09 67.0 187 33.2
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 3.0e-09 66.6 187 32.6
Haze_11958 Corylus avellana HOM05D009095 ORTHO05D005932 3.9e-09 66.2 220 30.0
Cc00_g25850 Coffea canephora HOM05D012087 ORTHO05D005932 5.1e-09 65.9 245 26.9
Oeu052457.1 Olea europaea HOM05D012087 ORTHO05D005932 5.1e-09 65.9 207 31.4
Phvul.003G188100 Phaseolus vulgaris HOM05D008369 ORTHO05D005932 5.1e-09 65.9 168 33.9
SalBow5G3698 Salvia bowleyana HOM05D012087 ORTHO05D005932 6.6e-09 65.5 210 29.5
MSTRG.11371 Avicennia marina HOM05D012087 ORTHO05D005932 8.6e-09 65.1 203 32.5
TAR622G0621 Trochodendron aralioides HOM05D034691 ORTHO05D005932 1.1e-08 64.7 211 34.1
Migut.L01243 Erythranthe guttata HOM05D009095 ORTHO05D005932 2.5e-08 63.5 190 33.2
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 3.3e-08 63.2 185 33.5
Nitab4.5_0005900g0030 Nicotiana tabacum HOM05D012087 ORTHO05D005932 4.3e-08 62.8 278 29.1
Potri.017G079000 Populus trichocarpa HOM05D009095 ORTHO05D005932 4.3e-08 62.8 193 33.2
Gorai.008G194900 Gossypium raimondii HOM05D008369 ORTHO05D005932 7.3e-08 62.0 192 34.4
PGSC0003DMG400024562 Solanum tuberosum HOM05D012087 ORTHO05D005932 9.5e-08 61.6 232 27.6
GSVIVG01019947001 Vitis vinifera HOM05D009095 ORTHO05D005932 9.5e-08 61.6 230 32.6
Actinidia19933 Actinidia chinensis HOM05D000944 ORTHO05D003581 2.8e-07 60.1 208 28.8
TWI56G0627 Tripterygium wilfordii HOM05D009095 ORTHO05D005932 4.7e-07 59.3 183 32.8
Gohir.A12G179000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 6.2e-07 58.9 188 34.0
Lalb_Chr12g0196981 Lupinus albus HOM05D008369 ORTHO05D005932 8.1e-07 58.5 191 31.9
Solyc03g115730.3 Solanum lycopersicum HOM05D012087 ORTHO05D005932 8.1e-07 58.5 232 28.9
TAR622G1347 Trochodendron aralioides HOM05D034691 ORTHO05D005932 8.1e-07 58.5 217 35.9
TPR.G2001 Trifolium pratense HOM05D008369 ORTHO05D005932 1.1e-06 58.2 179 38.0
Sopen03g034710 Solanum pennellii HOM05D012087 ORTHO05D005932 1.4e-06 57.8 232 27.6
VMungo1215G3129 Vigna mungo HOM05D008369 ORTHO05D005932 1.4e-06 57.8 162 32.7
DCAR_016580 Daucus carota HOM05D008369 ORTHO05D005932 1.8e-06 57.4 156 31.4
Glyma.17G102500 Glycine max HOM05D008369 ORTHO05D005932 1.8e-06 57.4 164 32.9
SGA_v2.0_scaffold313G48329 Striga asiatica HOM05D012087 ORTHO05D005932 1.8e-06 57.4 254 28.7
Aqoxy3G03491 Aquilegia oxysepala HOM05D037250 ORTHO05D005932 2.4e-06 57.0 250 25.6
HanXRQChr05g0155031 Helianthus annuus HOM05D008369 ORTHO05D011941 2.4e-06 57.0 213 31.5
Peaxi162Scf00274g00335 Petunia axillaris HOM05D012087 ORTHO05D005932 2.4e-06 57.0 200 30.0
Psat4g049480 Pisum sativum HOM05D008369 ORTHO05D005932 5.2e-06 55.8 198 34.3
Gohir.D12G181600 Gossypium hirsutum HOM05D008369 ORTHO05D005932 6.8e-06 55.5 192 32.8


User provided reference genes

Program Settings