Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024808 Camellia sinensis var. sinensis HOM05D000157 ORTHO05D003012 4.1e-95 351.3 167 100.0
Rhsim07G0021000 Rhododendron simsii HOM05D000086 ORTHO05D003012 2.4e-26 122.9 99 66.7
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 1.2e-25 120.6 99 65.7
CANSAT56G2508 Cannabis sativa HOM05D000086 ORTHO05D003012 3.4e-25 119.0 99 64.6
Lj7A519T40 Lonicera japonica HOM05D000086 ORTHO05D003012 3.4e-25 119.0 99 64.6
GSVIVG01027524001 Vitis vinifera HOM05D000086 ORTHO05D003012 1.7e-24 116.7 99 64.6
FAN01G3132 Fragaria x ananassa HOM05D000086 ORTHO05D003012 1.4e-23 113.6 102 60.8
vmacro13337 Vaccinium macrocarpon HOM05D000086 ORTHO05D003012 1.9e-23 113.2 99 60.6
FAN06G3711 Fragaria x ananassa HOM05D000086 ORTHO05D003012 4.2e-23 112.1 102 58.8
Atru.chr5.406 Acer truncatum HOM05D000086 ORTHO05D003012 5.5e-23 111.7 100 61.0
Actinidia38289 Actinidia chinensis HOM05D000086 ORTHO05D003012 5.5e-23 111.7 99 62.6
FAN10G2329 Fragaria x ananassa HOM05D000086 ORTHO05D003012 9.4e-23 110.9 102 58.8
Manes.01G262200 Manihot esculenta HOM05D000086 ORTHO05D003012 9.4e-23 110.9 99 59.6
TAR374G0032 Trochodendron aralioides HOM05D000086 ORTHO05D003012 9.4e-23 110.9 99 60.6
Cfa004183 Carpinus fangiana HOM05D000086 ORTHO05D003012 1.2e-22 110.5 99 61.6
Dinv32423 Davidia involucrata HOM05D000086 ORTHO05D003012 1.6e-22 110.2 99 61.6
Prupe.2G154700 Prunus persica HOM05D000086 ORTHO05D003012 2.1e-22 109.8 99 60.6
Sabra02G0121600 Salix brachista HOM05D000086 ORTHO05D003012 2.1e-22 109.8 99 58.6
FAN06G2050 Fragaria x ananassa HOM05D000086 ORTHO05D003012 3.6e-22 109.0 102 57.8
Nn1g01352 Nelumbo nucifera HOM05D000086 ORTHO05D003012 4.7e-22 108.6 99 58.6
Haze_15225 Corylus avellana HOM05D000086 ORTHO05D003012 8.0e-22 107.8 99 60.6
CiPaw.01G053700 Carya illinoinensis HOM05D000086 ORTHO05D003012 1.8e-21 106.7 99 59.6
QL08p050647 Quercus lobata HOM05D000086 ORTHO05D003012 2.3e-21 106.3 99 60.6
RcHm_v2.0_Chr1g0352271 Rosa chinensis HOM05D000086 ORTHO05D003012 2.3e-21 106.3 99 57.6
Thecc.01G368400 Theobroma cacao HOM05D000086 ORTHO05D003012 2.3e-21 106.3 99 57.6
MSTRG.20792 Avicennia marina HOM05D000086 ORTHO05D003012 3.0e-21 105.9 99 57.6
FAN03G3059 Fragaria x ananassa HOM05D000086 ORTHO05D003012 3.0e-21 105.9 99 58.6
ECA236G3488 Erigeron canadensis HOM05D000086 ORTHO05D003012 3.9e-21 105.5 99 56.6
FvH4_7g13140 Fragaria vesca HOM05D000086 ORTHO05D003012 3.9e-21 105.5 99 57.6
Potri.002G153400 Populus trichocarpa HOM05D000086 ORTHO05D003012 3.9e-21 105.5 98 58.2
FAN10G2927 Fragaria x ananassa HOM05D000086 ORTHO05D003012 6.7e-21 104.8 99 57.6
Lsat_1_v5_gn_7_8501 Lactuca sativa HOM05D006418 ORTHO05D008063 6.7e-21 104.8 99 56.6
Nn6g34263 Nelumbo nucifera HOM05D000086 ORTHO05D003012 8.8e-21 104.4 99 56.6
Potri.014G076800 Populus trichocarpa HOM05D000086 ORTHO05D003012 8.8e-21 104.4 99 57.6
TAR375G0405 Trochodendron aralioides HOM05D000157 ORTHO05D003012 8.8e-21 104.4 99 58.6
COL.COLO4_12623 Corchorus olitorius HOM05D000086 ORTHO05D003012 1.1e-20 104.0 99 57.6
Sabra14G0055500 Salix brachista HOM05D000086 ORTHO05D003012 1.1e-20 104.0 98 58.2
Cc02_g37240 Coffea canephora HOM05D000086 ORTHO05D003012 1.5e-20 103.6 99 56.6
HanXRQChr04g0121791 Helianthus annuus HOM05D000086 ORTHO05D003012 2.0e-20 103.2 99 56.6
HanXRQChr06g0169041 Helianthus annuus HOM05D000086 ORTHO05D003012 2.6e-20 102.8 99 55.6
MD07G1128400 Malus domestica HOM05D000086 ORTHO05D003012 2.6e-20 102.8 99 57.6
Manes.05G040100 Manihot esculenta HOM05D000086 ORTHO05D003012 3.3e-20 102.4 100 57.0
Nitab4.5_0010430g0040 Nicotiana tabacum HOM05D000086 ORTHO05D003012 3.3e-20 102.4 156 41.7
PSO782G1834 Papaver somniferum HOM05D000157 ORTHO05D003012 3.3e-20 102.4 99 55.6
Nitab4.5_0004550g0120 Nicotiana tabacum HOM05D000086 ORTHO05D003012 9.7e-20 100.9 156 41.0
PSO478G4761 Papaver somniferum HOM05D000157 ORTHO05D003012 9.7e-20 100.9 99 54.5
MSTRG.4877 Avicennia marina HOM05D000157 ORTHO05D003012 1.3e-19 100.5 98 56.1
Cpa.g.sc18.195 Carica papaya HOM05D000086 ORTHO05D003012 1.3e-19 100.5 99 56.6
Ciclev10022405m.g Citrus clementina HOM05D000086 ORTHO05D003012 1.7e-19 100.1 99 55.6
Duzib268G0857 Durio zibethinus HOM05D000086 ORTHO05D003012 2.8e-19 99.4 99 54.5
Migut.N01416 Erythranthe guttata HOM05D000086 ORTHO05D003012 3.7e-19 99.0 100 56.0
DCAR_006907 Daucus carota HOM05D000086 ORTHO05D003012 4.8e-19 98.6 100 57.0
Migut.B01689 Erythranthe guttata HOM05D000086 ORTHO05D003012 4.8e-19 98.6 100 57.0
Aqoxy7G00452 Aquilegia oxysepala HOM05D000157 ORTHO05D003012 6.3e-19 98.2 99 52.5
Eucgr.E00216 Eucalyptus grandis HOM05D000086 ORTHO05D003012 6.3e-19 98.2 99 53.5
Solyc01g091770.4 Solanum lycopersicum HOM05D000086 ORTHO05D003012 8.2e-19 97.8 94 57.4
Sopen01g037550 Solanum pennellii HOM05D000086 ORTHO05D003012 8.2e-19 97.8 94 57.4
PGSC0003DMG400017055 Solanum tuberosum HOM05D000086 ORTHO05D003012 8.2e-19 97.8 94 57.4
Sed0026610 Sechium edule HOM05D000086 ORTHO05D003012 1.4e-18 97.1 100 54.0
Peaxi162Scf00021g00626 Petunia axillaris HOM05D000086 ORTHO05D003012 1.8e-18 96.7 94 57.4
TWI14G1171 Tripterygium wilfordii HOM05D000086 ORTHO05D003012 2.4e-18 96.3 99 52.5
CsaV3_6G005840 Cucumis sativus L. HOM05D000086 ORTHO05D003012 4.1e-18 95.5 100 54.0
MELO3C022529.2 Cucumis melo HOM05D000086 ORTHO05D003012 7.0e-18 94.7 100 54.0
Medtr7g076250 Medicago truncatula HOM05D000086 ORTHO05D003012 1.2e-17 94.0 102 52.9
SGA_v2.0_scaffold11G05639 Striga asiatica HOM05D000086 ORTHO05D003012 1.6e-17 93.6 99 53.5
Ca_07864_v3 Cicer arietinum L. HOM05D000086 ORTHO05D003012 2.0e-17 93.2 100 52.0
Gohir.D08G043900 Gossypium hirsutum HOM05D000157 ORTHO05D003012 2.6e-17 92.8 99 52.5
Gorai.004G042600 Gossypium raimondii HOM05D000086 ORTHO05D003012 2.6e-17 92.8 99 52.5
TPR.G37737 Trifolium pratense HOM05D000086 ORTHO05D003012 2.6e-17 92.8 102 52.9
Gohir.A08G033200 Gossypium hirsutum HOM05D000086 ORTHO05D003012 3.5e-17 92.4 99 52.5
TWI59G1393 Tripterygium wilfordii HOM05D000086 ORTHO05D003012 3.5e-17 92.4 99 49.5
arahy.Tifrunner.gnm1.ann1.T385V0 Arachis hypogaea HOM05D000157 ORTHO05D003012 5.9e-17 91.7 141 44.0
Hund16962 Selenicereus undatus HOM05D000086 ORTHO05D003012 5.9e-17 91.7 99 51.5
arahy.Tifrunner.gnm1.ann1.JZ8562 Arachis hypogaea HOM05D000086 ORTHO05D003012 1.7e-16 90.1 102 52.0
Glyma.09G264300 Glycine max HOM05D000086 ORTHO05D003012 1.7e-16 90.1 102 52.9
Sed0002587 Sechium edule HOM05D000086 ORTHO05D003012 2.2e-16 89.7 100 50.0
Lj1g0014519 Lotus japonicus HOM05D000086 ORTHO05D003012 2.9e-16 89.4 102 52.0
Glyma.18G227700 Glycine max HOM05D000086 ORTHO05D003012 3.8e-16 89.0 102 52.0
Actinidia27829 Actinidia chinensis HOM05D000157 ORTHO05D003012 5.0e-16 88.6 97 53.6
arahy.Tifrunner.gnm1.ann1.3MA1UZ Arachis hypogaea HOM05D000157 ORTHO05D003012 5.0e-16 88.6 102 50.0
Phvul.008G070500 Phaseolus vulgaris HOM05D000086 ORTHO05D003012 6.5e-16 88.2 102 52.0
TPR.G17586 Trifolium pratense HOM05D006418 ORTHO05D008063 1.2e-14 84.0 135 40.0
Psat0s1132g0160 Pisum sativum HOM05D000058 ORTHO05D000255 1.6e-14 83.6 102 49.0
arahy.Tifrunner.gnm1.ann1.7NY7XM Arachis hypogaea HOM05D000086 ORTHO05D003012 2.1e-14 83.2 102 48.0
MBI04_g37684_MAGBIO Magnolia biondii HOM05D000157 ORTHO05D003012 2.1e-14 83.2 102 48.0
EL10Ac1g00978 Beta vulgaris HOM05D000086 ORTHO05D003012 2.7e-14 82.8 99 45.5
Os02g0676500 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D003012 2.7e-14 82.8 99 49.5
Psat4g151840 Pisum sativum HOM05D000157 ORTHO05D003012 6.1e-14 81.6 135 40.7
Ah.05g176040 Amaranthus hybridus HOM05D000086 ORTHO05D003012 1.8e-13 80.1 99 46.5
Lalb_Chr01g0021161 Lupinus albus HOM05D000086 ORTHO05D003012 1.8e-13 80.1 102 46.1
Lj3g0000505 Lotus japonicus HOM05D000086 ORTHO05D003012 3.0e-13 79.3 100 45.0
Gorai.008G116700 Gossypium raimondii HOM05D000086 ORTHO05D003012 4.0e-13 79.0 98 43.9
Phvul.010G092500 Phaseolus vulgaris HOM05D025633 ORTHO05D003012 4.0e-13 79.0 100 44.0
Glyma.03G017500 Glycine max HOM05D000086 ORTHO05D003012 5.2e-13 78.6 99 45.5
Gohir.D12G107200 Gossypium hirsutum HOM05D000086 ORTHO05D003012 5.2e-13 78.6 98 43.9
Glyma.07G078800 Glycine max HOM05D000086 ORTHO05D003012 1.5e-12 77.0 99 46.5
Os04g0571800 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D003012 1.3e-11 73.9 99 41.4
arahy.Tifrunner.gnm1.ann1.0X82MA Arachis hypogaea HOM05D000086 ORTHO05D003012 4.8e-11 72.0 102 41.2
arahy.Tifrunner.gnm1.ann1.6CW0B2 Arachis hypogaea HOM05D000086 ORTHO05D003012 6.3e-11 71.6 102 41.2
HPP92_001728 Vanilla planifolia HOM05D000157 ORTHO05D003012 8.2e-11 71.2 99 41.4
Lalb_Chr10g0097521 Lupinus albus HOM05D000086 ORTHO05D003012 1.1e-10 70.9 96 44.8
CDE04G1569 Ceratophyllum demersum HOM05D000157 ORTHO05D003012 3.1e-10 69.3 100 47.0
arahy.Tifrunner.gnm1.ann1.Z0RTZT Arachis hypogaea HOM05D000157 ORTHO05D003012 4.1e-10 68.9 97 44.3
TAR636G2977 Trochodendron aralioides HOM05D000157 ORTHO05D003012 7.0e-10 68.2 99 43.4
Zm00001eb187170 Zea mays HOM05D000157 ORTHO05D003012 7.0e-10 68.2 99 43.4
Potri.010G235200 Populus trichocarpa HOM05D000157 ORTHO05D003012 9.1e-10 67.8 99 41.4
Sabra10G0182400 Salix brachista HOM05D000157 ORTHO05D003012 1.2e-09 67.4 99 41.4
CANSAT56G4269 Cannabis sativa HOM05D000157 ORTHO05D003012 2.0e-09 66.6 99 42.4
PGR142G2239 Punica granatum HOM05D000157 ORTHO05D003012 2.7e-09 66.2 123 36.6
Actinidia34709 Actinidia chinensis HOM05D000157 ORTHO05D003012 3.5e-09 65.9 99 40.4
Aqoxy4G02878 Aquilegia oxysepala HOM05D000157 ORTHO05D003012 3.5e-09 65.9 99 42.4
Cpa.g.sc128.42 Carica papaya HOM05D000157 ORTHO05D003012 4.5e-09 65.5 102 41.2
RcHm_v2.0_Chr1g0333171 Rosa chinensis HOM05D000157 ORTHO05D003012 4.5e-09 65.5 150 34.0
unitig_749.g14358 Utricularia gibba HOM05D000086 ORTHO05D003012 4.5e-09 65.5 97 39.2
DCAR_019015 Daucus carota HOM05D000157 ORTHO05D003012 5.9e-09 65.1 100 40.0
Manes.10G056700 Manihot esculenta HOM05D000157 ORTHO05D003012 5.9e-09 65.1 133 35.3
THA.LOC104815203 Tarenaya hassleriana HOM05D000157 ORTHO05D003012 5.9e-09 65.1 99 39.4
arahy.Tifrunner.gnm1.ann1.TH3RP9 Arachis hypogaea HOM05D000157 ORTHO05D003012 7.7e-09 64.7 43 72.1
Lj2A27G62 Lonicera japonica HOM05D000157 ORTHO05D003012 7.7e-09 64.7 99 43.4
PGR031G2050 Punica granatum HOM05D000086 ORTHO05D003012 7.7e-09 64.7 99 39.4
Actinidia32920 Actinidia chinensis HOM05D000157 ORTHO05D003012 1.0e-08 64.3 38 76.3
Manes.07G090300 Manihot esculenta HOM05D000157 ORTHO05D003012 1.0e-08 64.3 99 39.4
QL04p041441 Quercus lobata HOM05D000157 ORTHO05D003012 1.0e-08 64.3 99 42.4
MELO3C019885.2 Cucumis melo HOM05D000157 ORTHO05D003012 1.3e-08 63.9 99 41.4
Duzib106G0403 Durio zibethinus HOM05D000157 ORTHO05D003012 1.3e-08 63.9 99 40.4
ECA238G3801 Erigeron canadensis HOM05D000157 ORTHO05D003012 1.7e-08 63.5 99 39.4
SGA_v2.0_scaffold153G37068 Striga asiatica HOM05D000086 ORTHO05D003012 1.7e-08 63.5 99 40.4
Thecc.10G110700 Theobroma cacao HOM05D000157 ORTHO05D003012 1.7e-08 63.5 99 39.4
Hma1.2p1_0352F.1_g133080 Hydrangea macrophylla HOM05D000157 ORTHO05D003012 2.9e-08 62.8 154 33.8
Prupe.2G086200 Prunus persica HOM05D000157 ORTHO05D003012 2.9e-08 62.8 99 40.4
MD02G1247900 Malus domestica HOM05D000157 ORTHO05D003012 3.8e-08 62.4 99 39.4
Nn2g14039 Nelumbo nucifera HOM05D000157 ORTHO05D003012 3.8e-08 62.4 97 40.2
CsaV3_6G004100 Cucumis sativus L. HOM05D000157 ORTHO05D003012 5.0e-08 62.0 99 40.4
Gorai.009G304700 Gossypium raimondii HOM05D000157 ORTHO05D003012 5.0e-08 62.0 99 40.4
MD07G1068500 Malus domestica HOM05D000157 ORTHO05D003012 5.0e-08 62.0 99 39.4
TAR633G2386 Trochodendron aralioides HOM05D000157 ORTHO05D003012 5.0e-08 62.0 99 39.4
Rhsim05G0061400 Rhododendron simsii HOM05D000157 ORTHO05D338958 6.5e-08 61.6 49 61.2
CiPaw.14G028900 Carya illinoinensis HOM05D000157 ORTHO05D003012 8.5e-08 61.2 99 40.4
Ciclev10032672m.g Citrus clementina HOM05D000157 ORTHO05D003012 8.5e-08 61.2 99 39.4
FAN01G1735 Fragaria x ananassa HOM05D000157 ORTHO05D003012 8.5e-08 61.2 99 38.4
Gohir.A05G288400 Gossypium hirsutum HOM05D000157 ORTHO05D003012 8.5e-08 61.2 99 40.4
Lsat_1_v5_gn_2_105320 Lactuca sativa HOM05D000157 ORTHO05D003012 8.5e-08 61.2 99 38.4
Sabra08G0017000 Salix brachista HOM05D000157 ORTHO05D003012 8.5e-08 61.2 106 38.7
Atru.chr12.973 Acer truncatum HOM05D000157 ORTHO05D003012 1.1e-07 60.8 99 37.4
Dinv20820 Davidia involucrata HOM05D000157 ORTHO05D003012 1.1e-07 60.8 99 40.4
Gohir.D05G289600 Gossypium hirsutum HOM05D000157 ORTHO05D003012 1.1e-07 60.8 99 40.4
ClCG08G008120 Citrullus lanatus HOM05D000157 ORTHO05D003012 1.5e-07 60.5 99 40.4
PSO384G2097 Papaver somniferum HOM05D000157 ORTHO05D003012 1.5e-07 60.5 99 41.4
AagrBONN_evm.TU.Sc2ySwM_228.2436 Anthoceros agrestis HOM05D000157 ORTHO05D003012 1.9e-07 60.1 99 37.4
Cfa011230 Carpinus fangiana HOM05D000157 ORTHO05D003012 1.9e-07 60.1 99 37.4
Haze_02599 Corylus avellana HOM05D000157 ORTHO05D003012 1.9e-07 60.1 99 37.4
FAN06G0588 Fragaria x ananassa HOM05D000157 ORTHO05D003012 2.5e-07 59.7 99 37.4
Lj5g0002507 Lotus japonicus HOM05D000157 ORTHO05D003012 2.5e-07 59.7 151 31.1
Potri.008G025300 Populus trichocarpa HOM05D000157 ORTHO05D003012 2.5e-07 59.7 99 39.4
FvH4_7g05950 Fragaria vesca HOM05D000157 ORTHO05D003012 3.2e-07 59.3 99 37.4
PSO339G4995 Papaver somniferum HOM05D000157 ORTHO05D003012 3.2e-07 59.3 99 40.4
Sed0022064 Sechium edule HOM05D000157 ORTHO05D003012 3.2e-07 59.3 99 39.4
ATR0820G230 Amborella trichopoda HOM05D000157 ORTHO05D003012 4.2e-07 58.9 99 40.4
HanXRQChr14g0456381 Helianthus annuus HOM05D000157 ORTHO05D003012 4.2e-07 58.9 99 38.4
Rhsim02G0145700 Rhododendron simsii HOM05D000157 ORTHO05D339504 4.2e-07 58.9 41 68.3
Sc09g0005530 Simmondsia chinensis HOM05D000157 ORTHO05D003012 4.2e-07 58.9 99 35.4
FAN03G2531 Fragaria x ananassa HOM05D000157 ORTHO05D003012 5.5e-07 58.5 99 36.4
Lj3A931G48 Lonicera japonica HOM05D000157 ORTHO05D003012 5.5e-07 58.5 151 32.5
Solyc11g007530.2 Solanum lycopersicum HOM05D000157 ORTHO05D003012 5.5e-07 58.5 99 38.4
Sopen11g003370 Solanum pennellii HOM05D000157 ORTHO05D003012 5.5e-07 58.5 99 38.4
PGSC0003DMG400027313 Solanum tuberosum HOM05D000157 ORTHO05D003012 5.5e-07 58.5 99 38.4
TWI63G0251 Tripterygium wilfordii HOM05D000157 ORTHO05D003012 5.5e-07 58.5 99 38.4
VMungo1383G1141 Vigna mungo HOM05D000086 ORTHO05D003012 5.5e-07 58.5 86 44.2
CSS0034300 Camellia sinensis var. sinensis HOM05D000157 ORTHO05D003012 9.4e-07 57.8 99 37.4
Dinv30651 Davidia involucrata HOM05D000157 ORTHO05D003012 9.4e-07 57.8 99 37.4
Peaxi162Scf00244g00067 Petunia axillaris HOM05D000157 ORTHO05D003012 1.2e-06 57.4 99 37.4
Sed0017629 Sechium edule HOM05D000157 ORTHO05D003012 1.2e-06 57.4 99 39.4
Nitab4.5_0001850g0040 Nicotiana tabacum HOM05D000157 ORTHO05D003012 1.6e-06 57.0 99 37.4
Rhsim07G0133700 Rhododendron simsii HOM05D007214 ORTHO05D008907 1.6e-06 57.0 35 80.0
CiPaw.01G052900 Carya illinoinensis HOM05D007580 ORTHO05D009620 2.1e-06 56.6 75 48.0
Nitab4.5_0002259g0010 Nicotiana tabacum HOM05D000157 ORTHO05D003012 2.1e-06 56.6 99 37.4
MBI12_g25035_MAGBIO Magnolia biondii HOM05D000157 ORTHO05D003012 2.7e-06 56.2 102 34.3
CSS0045052 Camellia sinensis var. sinensis HOM05D000157 ORTHO05D003012 3.6e-06 55.8 99 39.4
arahy.Tifrunner.gnm1.ann1.747AJA Arachis hypogaea HOM05D000157 ORTHO05D003012 4.7e-06 55.5 86 40.7
Migut.F00889 Erythranthe guttata HOM05D000157 ORTHO05D003012 4.7e-06 55.5 100 37.0
Actinidia06704 Actinidia chinensis HOM05D000157 ORTHO05D003012 6.1e-06 55.1 99 33.3
CiPaw.13G036600 Carya illinoinensis HOM05D000157 ORTHO05D003012 8.0e-06 54.7 99 34.3
vmacro10278 Vaccinium macrocarpon HOM05D000157 ORTHO05D003012 8.0e-06 54.7 99 39.4


User provided reference genes

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