Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024805 Camellia sinensis var. sinensis HOM05D003278 ORTHO05D003738 4.2e-24 114.0 63 100.0
Dinv23198 Davidia involucrata HOM05D003278 ORTHO05D003738 1.4e-16 89.0 63 79.4
Rhsim12G0179700 Rhododendron simsii HOM05D003278 ORTHO05D003738 3.6e-15 84.3 61 78.7
vmacro16744 Vaccinium macrocarpon HOM05D003278 ORTHO05D003738 2.8e-12 74.7 53 71.7
Nn3g16328 Nelumbo nucifera HOM05D003278 ORTHO05D003738 6.3e-12 73.6 54 72.2
Nn4g22194 Nelumbo nucifera HOM05D003278 ORTHO05D003738 1.1e-11 72.8 49 77.6
Gohir.A10G070801 Gossypium hirsutum HOM05D003278 ORTHO05D003738 3.1e-11 71.2 59 66.1
Cpa.g.sc70.91 Carica papaya HOM05D003278 ORTHO05D003738 4.1e-11 70.9 61 63.9
Gorai.011G087400 Gossypium raimondii HOM05D003278 ORTHO05D003738 5.3e-11 70.5 59 64.4
Gohir.D10G080300 Gossypium hirsutum HOM05D003278 ORTHO05D003738 6.9e-11 70.1 59 64.4
vmacro18369 Vaccinium macrocarpon HOM05D003278 ORTHO05D003738 6.9e-11 70.1 61 63.9
A02p02310 Brassica napus HOM05D003278 ORTHO05D003738 9.1e-11 69.7 61 60.7
BraA02t05202Z Brassica rapa HOM05D003278 ORTHO05D003738 9.1e-11 69.7 61 60.7
Ciclev10016821m.g Citrus clementina HOM05D003278 ORTHO05D003738 9.1e-11 69.7 61 60.7
Thecc.04G044100 Theobroma cacao HOM05D003278 ORTHO05D003738 1.2e-10 69.3 51 72.5
A03p06390 Brassica napus HOM05D003278 ORTHO05D003738 1.5e-10 68.9 61 59.0
A10p24380 Brassica napus HOM05D003278 ORTHO05D003738 1.5e-10 68.9 61 59.0
C02p06530 Brassica napus HOM05D003278 ORTHO05D003738 1.5e-10 68.9 61 57.4
C03p07350 Brassica napus HOM05D003278 ORTHO05D003738 1.5e-10 68.9 61 59.0
BolC2t06600H Brassica oleracea HOM05D003278 ORTHO05D003738 1.5e-10 68.9 61 57.4
BolC3t13239H Brassica oleracea HOM05D003278 ORTHO05D003738 1.5e-10 68.9 61 59.0
BraA03t09968Z Brassica rapa HOM05D003278 ORTHO05D003738 1.5e-10 68.9 61 59.0
BraA10t44504Z Brassica rapa HOM05D003278 ORTHO05D003738 1.5e-10 68.9 61 59.0
Sp6g29970 Schrenkiella parvula HOM05D003278 ORTHO05D003738 2.0e-10 68.6 61 59.0
BcaB01g05313 Brassica carinata HOM05D003278 ORTHO05D003738 3.4e-10 67.8 61 59.0
C09p63090 Brassica napus HOM05D003278 ORTHO05D003738 3.4e-10 67.8 61 59.0
BolC9t59145H Brassica oleracea HOM05D003278 ORTHO05D003738 3.4e-10 67.8 61 59.0
Atru.chr6.2630 Acer truncatum HOM05D003278 ORTHO05D003738 4.5e-10 67.4 61 59.0
Duzib187G1801 Durio zibethinus HOM05D003278 ORTHO05D003738 4.5e-10 67.4 48 72.9
Duzib264G0022 Durio zibethinus HOM05D003278 ORTHO05D003738 4.5e-10 67.4 51 68.6
TAR371G0395 Trochodendron aralioides HOM05D003278 ORTHO05D003738 4.5e-10 67.4 53 66.0
Actinidia37737 Actinidia chinensis HOM05D003278 ORTHO05D003738 5.9e-10 67.0 54 66.7
Ah.03g136310 Amaranthus hybridus HOM05D003278 ORTHO05D003738 5.9e-10 67.0 54 66.7
AL6G24690 Arabidopsis lyrata HOM05D003278 ORTHO05D003738 5.9e-10 67.0 61 57.4
Lsat_1_v5_gn_0_13201 Lactuca sativa HOM05D003278 ORTHO05D003738 7.7e-10 66.6 57 64.9
RcHm_v2.0_Chr2g0176281 Rosa chinensis HOM05D003278 ORTHO05D003738 7.7e-10 66.6 61 60.7
Sed0025572 Sechium edule HOM05D003278 ORTHO05D003738 7.7e-10 66.6 61 60.7
Hund02482 Selenicereus undatus HOM05D003278 ORTHO05D003738 7.7e-10 66.6 51 68.6
BcaNung06032 Brassica carinata HOM05D003278 ORTHO05D003738 1.0e-09 66.2 61 57.4
Thhalv10014730m.g Eutrema salsugineum HOM05D003278 ORTHO05D003738 1.0e-09 66.2 61 57.4
MBI11_g37078_MAGBIO Magnolia biondii HOM05D003278 ORTHO05D003738 1.0e-09 66.2 49 67.3
Potri.001G323400 Populus trichocarpa HOM05D003278 ORTHO05D003738 1.0e-09 66.2 47 70.2
AT5G14030 Arabidopsis thaliana HOM05D003278 ORTHO05D003738 1.3e-09 65.9 61 55.7
CiPaw.04G002400 Carya illinoinensis HOM05D003278 ORTHO05D003738 1.3e-09 65.9 54 63.0
ClCG05G012820 Citrullus lanatus HOM05D003278 ORTHO05D003738 1.3e-09 65.9 61 57.4
Dinv25624 Davidia involucrata HOM05D003278 ORTHO05D003738 1.3e-09 65.9 62 61.3
THA.LOC104821124 Tarenaya hassleriana HOM05D003278 ORTHO05D003738 1.3e-09 65.9 61 55.7
Actinidia19562 Actinidia chinensis HOM05D003278 ORTHO05D003738 1.7e-09 65.5 65 61.5
CARHR199350 Cardamine hirsuta HOM05D003278 ORTHO05D003738 1.7e-09 65.5 61 54.1
Dinv33296 Davidia involucrata HOM05D003278 ORTHO05D003738 1.7e-09 65.5 54 64.8
Gorai.001G273900 Gossypium raimondii HOM05D003278 ORTHO05D003738 1.7e-09 65.5 53 64.2
THA.LOC104822420 Tarenaya hassleriana HOM05D003278 ORTHO05D003738 1.7e-09 65.5 61 54.1
EL10Ac6g13378 Beta vulgaris HOM05D003278 ORTHO05D003738 2.2e-09 65.1 55 67.3
CSS0029868 Camellia sinensis var. sinensis HOM05D003278 ORTHO05D003738 2.2e-09 65.1 61 57.4
HanXRQChr15g0475771 Helianthus annuus HOM05D003278 ORTHO05D003738 2.2e-09 65.1 46 71.7
SalBow4G1316 Salvia bowleyana HOM05D003278 ORTHO05D003738 2.2e-09 65.1 52 63.5
unitig_27.g25341 Utricularia gibba HOM05D000127 ORTHO05D000243 2.2e-09 65.1 55 60.0
CiPaw.03G003600 Carya illinoinensis HOM05D003278 ORTHO05D003738 2.9e-09 64.7 54 64.8
CsaV3_3G027640 Cucumis sativus L. HOM05D003278 ORTHO05D003738 2.9e-09 64.7 53 64.2
FAN05G4705 Fragaria x ananassa HOM05D003278 ORTHO05D003738 2.9e-09 64.7 61 57.4
Gohir.D07G238100 Gossypium hirsutum HOM05D003278 ORTHO05D003738 2.9e-09 64.7 51 64.7
Prupe.3G311500 Prunus persica HOM05D003278 ORTHO05D003738 2.9e-09 64.7 58 58.6
Sc04g0000310 Simmondsia chinensis HOM05D003278 ORTHO05D003738 2.9e-09 64.7 60 60.0
Duzib147G0947 Durio zibethinus HOM05D003278 ORTHO05D003738 3.8e-09 64.3 51 64.7
MBI07_g37484_MAGBIO Magnolia biondii HOM05D003278 ORTHO05D003738 3.8e-09 64.3 54 59.3
MD09G1005300 Malus domestica HOM05D003278 ORTHO05D003738 3.8e-09 64.3 61 55.7
Nitab4.5_0012236g0010 Nicotiana tabacum HOM05D003278 ORTHO05D003738 3.8e-09 64.3 55 58.2
PGR142G1270 Punica granatum HOM05D003278 ORTHO05D003738 3.8e-09 64.3 61 60.7
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 5.0e-09 63.9 48 66.7
QL02p070117 Quercus lobata HOM05D003278 ORTHO05D003738 5.0e-09 63.9 53 62.3
AUR62041088 Chenopodium quinoa HOM05D003278 ORTHO05D003738 6.5e-09 63.5 43 74.4
Hund04242 Selenicereus undatus HOM05D003278 ORTHO05D003738 6.5e-09 63.5 52 67.3
SGA_v2.0_scaffold44G16942 Striga asiatica HOM05D003278 ORTHO05D003738 6.5e-09 63.5 52 61.5
Aa31LG5G11160 Aethionema arabicum HOM05D003278 ORTHO05D003738 8.5e-09 63.2 61 52.5
COL.COLO4_13334 Corchorus olitorius HOM05D003278 ORTHO05D003738 8.5e-09 63.2 51 64.7
SGA_v2.0_scaffold253G45157 Striga asiatica HOM05D003278 ORTHO05D003738 8.5e-09 63.2 52 61.5
TAR622G0821 Trochodendron aralioides HOM05D003278 ORTHO05D003738 8.5e-09 63.2 61 57.4
Carub.0006s1222 Capsella rubella HOM05D003278 ORTHO05D003738 1.1e-08 62.8 62 56.5
MELO3C014796.2 Cucumis melo HOM05D003278 ORTHO05D003738 1.1e-08 62.8 61 59.0
Migut.F00023 Erythranthe guttata HOM05D003278 ORTHO05D003738 1.1e-08 62.8 53 54.7
FvH4_6g54110 Fragaria vesca HOM05D003278 ORTHO05D003738 1.1e-08 62.8 61 59.0
FAN09G0488 Fragaria x ananassa HOM05D003278 ORTHO05D003738 1.1e-08 62.8 61 59.0
FAN14G4759 Fragaria x ananassa HOM05D003278 ORTHO05D003738 1.1e-08 62.8 53 64.2
Lj9C484T7 Lonicera japonica HOM05D003278 ORTHO05D003738 1.1e-08 62.8 53 62.3
Rhsim08G0040400 Rhododendron simsii HOM05D003278 ORTHO05D003738 1.1e-08 62.8 61 57.4
ECA246G3103 Erigeron canadensis HOM05D003278 ORTHO05D003738 1.4e-08 62.4 60 63.3
Lj1g0002913 Lotus japonicus HOM05D003278 ORTHO05D003738 1.4e-08 62.4 59 57.6
MD17G1009400 Malus domestica HOM05D003278 ORTHO05D003738 1.4e-08 62.4 61 54.1
Manes.04G091080 Manihot esculenta HOM05D003278 ORTHO05D003738 1.4e-08 62.4 61 55.7
PGSC0003DMG400019852 Solanum tuberosum HOM05D003278 ORTHO05D003738 1.4e-08 62.4 53 58.5
arahy.Tifrunner.gnm1.ann1.17PZW3 Arachis hypogaea HOM05D003278 ORTHO05D003738 1.9e-08 62.0 62 56.5
arahy.Tifrunner.gnm1.ann1.IB6BQ9 Arachis hypogaea HOM05D003278 ORTHO05D003738 1.9e-08 62.0 62 56.5
Gohir.A07G230900 Gossypium hirsutum HOM05D003278 ORTHO05D003738 1.9e-08 62.0 50 64.0
Gohir.D04G073700 Gossypium hirsutum HOM05D003278 ORTHO05D003738 1.9e-08 62.0 59 59.3
PSO017G3850 Papaver somniferum HOM05D003278 ORTHO05D003738 1.9e-08 62.0 52 65.4
GSVIVG01033016001 Vitis vinifera HOM05D003278 ORTHO05D003738 1.9e-08 62.0 56 58.9
CDE06G2413 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 2.5e-08 61.6 57 59.6
FAN02G4589 Fragaria x ananassa HOM05D003278 ORTHO05D003738 2.5e-08 61.6 61 57.4
PSO478G3999 Papaver somniferum HOM05D003278 ORTHO05D003738 2.5e-08 61.6 52 63.5
MSTRG.3051 Avicennia marina HOM05D003278 ORTHO05D003738 3.2e-08 61.2 52 59.6
Gohir.A09G000900 Gossypium hirsutum HOM05D003278 ORTHO05D003738 3.2e-08 61.2 51 58.8
Hma1.2p1_0421F.1_g150030 Hydrangea macrophylla HOM05D003278 ORTHO05D003738 3.2e-08 61.2 58 58.6
Nitab4.5_0007858g0040 Nicotiana tabacum HOM05D003278 ORTHO05D003738 3.2e-08 61.2 53 56.6
TWI39G0190 Tripterygium wilfordii HOM05D003278 ORTHO05D003738 3.2e-08 61.2 51 60.8
Manes.11G078900 Manihot esculenta HOM05D003278 ORTHO05D003738 4.2e-08 60.8 61 54.1
Oeu039787.1 Olea europaea HOM05D003278 ORTHO05D003738 4.2e-08 60.8 49 61.2
TWI32G0304 Tripterygium wilfordii HOM05D003278 ORTHO05D003738 4.2e-08 60.8 57 56.1
AUR62029530 Chenopodium quinoa HOM05D003278 ORTHO05D003738 5.5e-08 60.5 52 61.5
Gorai.012G083000 Gossypium raimondii HOM05D003278 ORTHO05D003738 5.5e-08 60.5 59 57.6
Oeu030645.1 Olea europaea HOM05D003278 ORTHO05D003738 5.5e-08 60.5 55 58.2
Gohir.A05G334800 Gossypium hirsutum HOM05D003278 ORTHO05D003738 9.4e-08 59.7 59 57.6
Sed0011025 Sechium edule HOM05D003278 ORTHO05D373220 9.4e-08 59.7 61 55.7
Gohir.D02G140975 Gossypium hirsutum HOM05D003278 ORTHO05D003738 1.2e-07 59.3 43 65.1
Gorai.005G155600 Gossypium raimondii HOM05D003278 ORTHO05D003738 1.2e-07 59.3 43 65.1
Ah.11g046580 Amaranthus hybridus HOM05D003078 ORTHO05D003545 1.6e-07 58.9 66 57.6
AUR62042919 Chenopodium quinoa HOM05D000879 ORTHO05D002043 1.6e-07 58.9 35 77.1
Lalb_Chr22g0360061 Lupinus albus HOM05D003278 ORTHO05D003738 1.6e-07 58.9 59 52.5
Lalb_Chr22g0360081 Lupinus albus HOM05D003278 ORTHO05D003738 1.6e-07 58.9 59 52.5
Nitab4.5_0000559g0330 Nicotiana tabacum HOM05D003278 ORTHO05D003738 1.6e-07 58.9 49 57.1
Potri.017G061900 Populus trichocarpa HOM05D003278 ORTHO05D003738 1.6e-07 58.9 43 69.8
TWI34G2017 Tripterygium wilfordii HOM05D003278 ORTHO05D003738 1.6e-07 58.9 57 52.6
Sc07g0003660 Simmondsia chinensis HOM05D003278 ORTHO05D003738 2.1e-07 58.5 57 57.9
Aa31LG2G5730 Aethionema arabicum HOM05D003278 ORTHO05D003738 2.7e-07 58.2 62 54.8
CSS0047853 Camellia sinensis var. sinensis HOM05D003278 ORTHO05D003738 2.7e-07 58.2 56 58.9
AUR62042611 Chenopodium quinoa HOM05D012416 ORTHO05D006373 2.7e-07 58.2 40 70.0
Haze_14926 Corylus avellana HOM05D003278 ORTHO05D003738 2.7e-07 58.2 54 57.4
Lj7C615G2 Lonicera japonica HOM05D003278 ORTHO05D003738 2.7e-07 58.2 59 52.5
Peaxi162Scf00420g00076 Petunia axillaris HOM05D003278 ORTHO05D003738 2.7e-07 58.2 61 55.7
Thhalv10004966m.g Eutrema salsugineum HOM05D003278 ORTHO05D003738 3.6e-07 57.8 56 53.6
Gorai.006G000700 Gossypium raimondii HOM05D003278 ORTHO05D003738 3.6e-07 57.8 55 56.4
Oeu013479.1 Olea europaea HOM05D003278 ORTHO05D003738 3.6e-07 57.8 52 55.8
Peaxi162Scf00171g01123 Petunia axillaris HOM05D003278 ORTHO05D003738 3.6e-07 57.8 53 54.7
VMungo1383G2948 Vigna mungo HOM05D003278 ORTHO05D003738 3.6e-07 57.8 62 58.1
Aqoxy3G01757 Aquilegia oxysepala HOM05D003278 ORTHO05D003738 4.6e-07 57.4 47 59.6
AUR62034786 Chenopodium quinoa HOM05D003278 ORTHO05D003738 4.6e-07 57.4 52 59.6
DCAR_021812 Daucus carota HOM05D003278 ORTHO05D003738 4.6e-07 57.4 50 60.0
HanXRQChr17g0550841 Helianthus annuus HOM05D003278 ORTHO05D003738 4.6e-07 57.4 55 58.2
Nitab4.5_0002172g0040 Nicotiana tabacum HOM05D003278 ORTHO05D003738 4.6e-07 57.4 56 58.9
Eucgr.I01611 Eucalyptus grandis HOM05D003278 ORTHO05D003738 6.1e-07 57.0 64 53.1
CAN.G637.57 Capsicum annuum HOM05D003278 ORTHO05D003738 7.9e-07 56.6 53 54.7
Solyc03g097750.4 Solanum lycopersicum HOM05D003278 ORTHO05D003738 7.9e-07 56.6 53 52.8
Sopen03g028510 Solanum pennellii HOM05D003278 ORTHO05D003738 7.9e-07 56.6 52 53.8
Phvul.001G087200 Phaseolus vulgaris HOM05D003278 ORTHO05D003738 1.0e-06 56.2 62 54.8
PGSC0003DMG400020198 Solanum tuberosum HOM05D003278 ORTHO05D003738 1.0e-06 56.2 53 54.7
THA.LOC104825648 Tarenaya hassleriana HOM05D003278 ORTHO05D003738 1.0e-06 56.2 51 54.9
Cc07_g01150 Coffea canephora HOM05D003278 ORTHO05D003738 1.4e-06 55.8 47 59.6
Migut.D01229 Erythranthe guttata HOM05D003278 ORTHO05D003738 1.4e-06 55.8 61 54.1
Glyma.19G099900 Glycine max HOM05D003278 ORTHO05D003738 1.4e-06 55.8 62 56.5
Lsat_1_v5_gn_0_19201 Lactuca sativa HOM05D003278 ORTHO05D003738 1.4e-06 55.8 46 63.0
Sp2g15970 Schrenkiella parvula HOM05D003278 ORTHO05D003738 1.4e-06 55.8 56 53.6
CAN.G473.150 Capsicum annuum HOM05D003278 ORTHO05D003738 1.8e-06 55.5 38 68.4
AUR62042268 Chenopodium quinoa HOM05D000879 ORTHO05D002043 1.8e-06 55.5 52 57.7
AUR62044337 Chenopodium quinoa HOM05D000109 ORTHO05D000210 1.8e-06 55.5 53 52.8
Ca_08116_v3 Cicer arietinum L. HOM05D003278 ORTHO05D003738 1.8e-06 55.5 61 52.5
TPR.G5764 Trifolium pratense HOM05D003278 ORTHO05D003738 1.8e-06 55.5 61 54.1
Glyma.16G050800 Glycine max HOM05D003278 ORTHO05D003738 2.3e-06 55.1 62 54.8
Medtr7g083560 Medicago truncatula HOM05D003278 ORTHO05D003738 2.3e-06 55.1 62 54.8
Nitab4.5_0000519g0210 Nicotiana tabacum HOM05D003278 ORTHO05D003738 2.3e-06 55.1 56 55.4
Solyc02g094440.4 Solanum lycopersicum HOM05D003278 ORTHO05D003738 2.3e-06 55.1 61 50.8
Sopen02g039100 Solanum pennellii HOM05D003278 ORTHO05D003738 2.3e-06 55.1 61 50.8
Actinidia08897 Actinidia chinensis HOM05D003278 ORTHO05D003738 3.0e-06 54.7 30 86.7
Lalb_Chr24g0403221 Lupinus albus HOM05D003278 ORTHO05D003738 3.9e-06 54.3 61 52.5
Psat3g094840 Pisum sativum HOM05D003278 ORTHO05D003738 6.7e-06 53.5 61 50.8


User provided reference genes

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