Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 3.6e-91 338.2 166 100.0
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 3.2e-47 192.2 106 84.0
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 3.2e-47 192.2 106 84.0
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 6.9e-42 174.5 106 76.4
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 9.0e-42 174.1 106 75.5
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 4.5e-41 171.8 106 72.6
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 9.9e-41 170.6 106 72.6
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 1.3e-40 170.2 97 78.4
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 1.1e-39 167.2 97 79.4
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 4.2e-39 165.2 104 71.2
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 5.4e-39 164.9 105 74.3
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 4.6e-38 161.8 106 68.9
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 1.8e-37 159.8 106 67.9
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.8e-37 159.8 106 67.9
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.0e-37 159.1 106 67.9
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 3.9e-37 158.7 106 68.9
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 3.9e-37 158.7 106 68.9
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 3.9e-37 158.7 106 68.9
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 3.9e-37 158.7 106 68.9
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 5.1e-37 158.3 106 67.9
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 5.1e-37 158.3 106 67.9
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 5.1e-37 158.3 106 67.9
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 6.7e-37 157.9 97 74.2
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 8.7e-37 157.5 114 64.9
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 8.7e-37 157.5 106 67.0
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.1e-36 157.1 106 67.9
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.1e-36 157.1 97 71.1
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 1.5e-36 156.8 106 68.9
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 2.5e-36 156.0 106 67.9
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.3e-36 155.2 106 65.1
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 4.3e-36 155.2 106 62.3
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 4.3e-36 155.2 106 67.0
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 5.6e-36 154.8 106 64.2
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 7.4e-36 154.5 106 68.9
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 7.4e-36 154.5 106 64.2
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 7.4e-36 154.5 106 67.9
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 7.4e-36 154.5 102 67.6
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 7.4e-36 154.5 97 71.1
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 9.6e-36 154.1 106 67.9
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.3e-35 153.7 106 64.2
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.3e-35 153.7 106 66.0
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 1.6e-35 153.3 106 65.1
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 2.1e-35 152.9 106 66.0
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 2.8e-35 152.5 106 64.2
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 2.8e-35 152.5 100 68.0
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 2.8e-35 152.5 102 66.7
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 2.8e-35 152.5 106 65.1
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 2.8e-35 152.5 97 69.1
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 2.8e-35 152.5 102 66.7
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 2.8e-35 152.5 106 66.0
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 3.7e-35 152.1 124 55.6
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 4.8e-35 151.8 106 66.0
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 4.8e-35 151.8 97 70.1
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 6.2e-35 151.4 106 66.0
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 8.1e-35 151.0 106 63.2
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 8.1e-35 151.0 106 63.2
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 8.1e-35 151.0 106 66.0
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 8.1e-35 151.0 106 63.2
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 1.1e-34 150.6 106 63.2
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.1e-34 150.6 106 65.1
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.1e-34 150.6 106 66.0
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.1e-34 150.6 106 65.1
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 1.8e-34 149.8 97 69.1
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 2.4e-34 149.4 106 62.3
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.4e-34 149.4 106 66.0
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 3.1e-34 149.1 102 64.7
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 3.1e-34 149.1 106 61.3
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 4.0e-34 148.7 106 65.1
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 4.0e-34 148.7 98 66.3
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 4.0e-34 148.7 102 64.7
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 6.9e-34 147.9 97 63.9
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 9.0e-34 147.5 97 68.0
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 9.0e-34 147.5 106 63.2
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 9.0e-34 147.5 106 65.1
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 1.5e-33 146.7 95 68.4
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 2.0e-33 146.4 106 63.2
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.6e-33 146.0 106 58.5
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 3.4e-33 145.6 100 65.0
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 3.4e-33 145.6 107 61.7
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 3.4e-33 145.6 106 64.2
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 4.5e-33 145.2 102 62.7
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 5.8e-33 144.8 97 64.9
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 5.8e-33 144.8 106 60.4
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 7.6e-33 144.4 102 62.7
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 1.3e-32 143.7 106 59.4
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 1.7e-32 143.3 106 59.4
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.7e-32 143.3 106 63.2
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 3.8e-32 142.1 106 63.2
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.1e-31 140.6 98 64.3
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 1.1e-31 140.6 106 56.6
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 1.1e-31 140.6 97 66.0
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 4.2e-31 138.7 106 60.4
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 4.2e-31 138.7 106 60.4
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 5.5e-31 138.3 106 59.4
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 5.5e-31 138.3 106 59.4
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 5.5e-31 138.3 106 59.4
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 5.5e-31 138.3 102 59.8
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 7.1e-31 137.9 106 60.4
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 9.3e-31 137.5 106 59.4
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 9.3e-31 137.5 106 59.4
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 9.3e-31 137.5 106 59.4
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 9.3e-31 137.5 106 59.4
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 9.3e-31 137.5 106 59.4
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 9.3e-31 137.5 106 59.4
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 9.3e-31 137.5 106 59.4
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 1.2e-30 137.1 106 58.5
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 1.2e-30 137.1 131 53.4
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 1.6e-30 136.7 106 59.4
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 1.6e-30 136.7 106 58.5
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 4.6e-30 135.2 106 55.7
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 7.9e-30 134.4 106 57.5
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 7.9e-30 134.4 106 57.5
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 1.0e-29 134.0 106 54.7
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 1.3e-29 133.7 106 57.5
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 1.3e-29 133.7 106 58.5
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 2.3e-29 132.9 106 57.5
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.5e-28 130.2 102 56.9
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 3.3e-28 129.0 96 59.4
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 3.3e-28 129.0 96 59.4
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 4.3e-28 128.6 106 58.5
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.8e-27 125.2 90 65.6
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 8.2e-27 124.4 119 53.8
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 6.5e-24 114.8 106 52.8
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 8.4e-24 114.4 98 56.1
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 2.5e-23 112.8 106 46.2
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 3.2e-23 112.5 97 54.6
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 7.9e-22 107.8 101 49.5
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.3e-21 107.1 106 47.2
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 1.8e-21 106.7 72 62.5
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 1.8e-21 106.7 102 51.0
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 3.9e-21 105.5 71 64.8
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 5.1e-21 105.1 97 47.4
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 2.5e-20 102.8 71 67.6
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 1.6e-19 100.1 97 45.4
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 3.1e-18 95.9 57 73.7
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 1.0e-16 90.9 102 43.1
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 5.0e-16 88.6 100 39.0
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.0e-09 66.6 73 38.4
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 2.6e-09 66.2 58 53.4
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.0e-08 64.3 72 43.1
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 5.5e-07 58.5 38 60.5


User provided reference genes

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