Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 9.6e-112 406.8 194 100.0
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 1.6e-82 309.7 193 77.2
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 2.7e-82 308.9 194 78.9
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.5e-80 303.1 178 80.3
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.7e-79 299.7 194 77.8
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 1.8e-78 296.2 192 76.6
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 1.8e-78 296.2 194 75.8
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 7.0e-78 294.3 189 76.7
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.2e-77 293.5 195 74.9
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.2e-77 293.5 194 72.2
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 1.2e-77 293.5 145 91.7
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 1.6e-77 293.1 190 75.8
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 7.7e-77 290.8 233 65.2
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 1.3e-76 290.0 177 80.2
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 1.7e-76 289.7 156 85.9
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.2e-76 289.3 199 72.4
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 5.0e-76 288.1 192 74.0
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 8.5e-76 287.3 228 67.5
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 1.9e-75 286.2 144 88.9
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 3.2e-75 285.4 190 71.6
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 7.2e-75 284.3 173 78.0
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.2e-74 283.5 190 70.5
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 1.6e-74 283.1 144 84.7
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 2.1e-74 282.7 173 76.9
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 2.1e-74 282.7 156 82.7
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 2.7e-74 282.3 173 76.9
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 3.6e-74 282.0 175 78.3
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 4.7e-74 281.6 195 70.3
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 6.1e-74 281.2 143 88.1
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 6.1e-74 281.2 173 76.9
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 8.0e-74 280.8 186 72.0
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 8.0e-74 280.8 144 84.0
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 1.0e-73 280.4 183 74.9
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.0e-73 280.4 185 72.4
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 1.0e-73 280.4 194 70.1
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.4e-73 280.0 143 88.1
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 1.8e-73 279.6 144 87.5
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 1.8e-73 279.6 183 71.6
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.8e-73 279.6 163 79.8
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 1.8e-73 279.6 163 79.8
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 1.8e-73 279.6 194 71.6
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 2.3e-73 279.3 178 74.7
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 2.3e-73 279.3 143 88.1
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 2.3e-73 279.3 183 74.3
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 2.3e-73 279.3 192 70.8
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 2.3e-73 279.3 174 77.0
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 3.0e-73 278.9 190 71.1
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 3.0e-73 278.9 194 73.7
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.0e-73 278.9 194 73.7
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 6.7e-73 277.7 163 77.9
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 6.7e-73 277.7 157 80.9
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 6.7e-73 277.7 178 73.6
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 6.7e-73 277.7 178 74.2
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 6.7e-73 277.7 157 80.9
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 6.7e-73 277.7 163 79.1
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 8.8e-73 277.3 173 75.7
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.1e-72 276.9 184 73.4
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 1.1e-72 276.9 184 73.9
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.1e-72 276.9 173 74.6
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 1.1e-72 276.9 184 72.3
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 1.5e-72 276.6 175 74.9
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 1.5e-72 276.6 175 74.9
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.5e-72 276.6 194 73.2
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 2.0e-72 276.2 157 80.3
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 2.0e-72 276.2 171 77.8
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 2.6e-72 275.8 170 78.8
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 5.7e-72 274.6 184 71.7
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 5.7e-72 274.6 184 71.7
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 7.5e-72 274.2 144 85.4
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 9.7e-72 273.9 180 72.2
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 9.7e-72 273.9 143 86.0
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 2.8e-71 272.3 183 72.1
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.7e-71 271.9 173 74.6
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.7e-71 271.9 194 72.2
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 4.8e-71 271.6 143 83.2
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 6.3e-71 271.2 173 74.0
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 6.3e-71 271.2 144 84.7
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 1.8e-70 269.6 174 74.7
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 9.1e-70 267.3 148 79.1
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 1.2e-69 266.9 173 73.4
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 1.2e-69 266.9 156 75.6
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.0e-69 266.2 143 81.1
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 3.5e-69 265.4 144 80.6
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 3.8e-68 261.9 155 78.7
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.5e-67 259.2 152 81.6
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.2e-66 256.9 141 80.1
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 2.6e-64 249.2 120 95.0
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.4e-64 248.8 142 77.5
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 3.4e-64 248.8 168 72.6
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.7e-63 246.5 140 75.7
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 2.8e-63 245.7 127 85.0
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 2.8e-63 245.7 142 73.2
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 8.3e-63 244.2 144 73.6
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 1.1e-62 243.8 162 76.5
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 2.0e-61 239.6 126 85.7
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 7.7e-61 237.7 146 76.7
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.0e-60 237.3 120 90.0
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 2.2e-60 236.1 184 67.4
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 8.5e-60 234.2 156 75.0
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.9e-59 233.0 156 71.8
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 1.2e-58 230.3 169 68.6
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 2.1e-58 229.6 140 77.1
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 2.7e-58 229.2 119 86.6
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.0e-57 227.3 132 77.3
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 7.5e-56 221.1 140 69.3
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 5.4e-54 214.9 120 82.5
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 3.5e-53 212.2 145 70.3
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.9e-52 209.1 148 68.9
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 8.0e-50 201.1 105 86.7
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 6.4e-47 191.4 99 85.9
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 3.2e-46 189.1 194 54.1
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 1.7e-44 183.3 150 67.3
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.8e-42 176.0 96 85.4
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 2.0e-40 169.9 88 86.4
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 2.0e-40 169.9 116 69.0
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 9.8e-40 167.5 150 51.3
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.9e-39 166.0 154 52.6
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.4e-38 163.7 170 47.6
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.1e-35 154.1 204 42.2
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 1.2e-34 150.6 173 46.2
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.2e-34 150.6 159 47.2
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 2.8e-34 149.4 145 49.0
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 2.6e-32 142.9 159 52.8
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 4.1e-30 135.6 85 70.6
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.0e-28 131.0 72 84.7
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 4.3e-27 125.6 70 84.3
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 6.2e-26 121.7 133 46.6
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 8.9e-25 117.9 59 84.7
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.4e-22 109.8 120 46.7
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.0e-20 104.4 53 86.8
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 6.6e-20 101.7 173 40.5
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 1.1e-14 84.3 107 44.9
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 1.3e-12 77.4 145 31.0
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 1.9e-11 73.6 126 46.8
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 1.3e-10 70.9 190 28.9
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 8.1e-10 68.2 31 90.3
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 2.6e-08 63.2 127 30.7
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 5.8e-08 62.0 95 42.1
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 4.9e-07 58.9 145 31.0


User provided reference genes

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