Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024769 Camellia sinensis var. sinensis HOM05D008110 ORTHO05D000088 2.3e-110 402.1 192 100.0
Rhsim11G0170700 Rhododendron simsii HOM05D008110 ORTHO05D000088 1.4e-49 200.3 134 66.4
RhsimUnG0089900 Rhododendron simsii HOM05D008110 ORTHO05D000088 1.8e-49 199.9 134 65.7
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 1.1e-46 190.7 190 52.6
Hma1.2p1_1527F.1_g289060 Hydrangea macrophylla HOM05D008110 ORTHO05D000088 2.7e-42 176.0 140 56.4
Dinv42109 Davidia involucrata HOM05D008110 ORTHO05D000088 8.8e-41 171.0 137 53.3
DCAR_022075 Daucus carota HOM05D008110 ORTHO05D000088 1.1e-35 154.1 121 52.1
Rhsim02G0167400 Rhododendron simsii HOM05D008110 ORTHO05D000088 6.1e-34 148.3 100 65.0
Nitab4.5_0008194g0010 Nicotiana tabacum HOM05D008110 ORTHO05D000088 1.2e-32 144.1 129 48.8
PGSC0003DMG401025831 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.2e-32 144.1 144 44.4
Nitab4.5_0001401g0140 Nicotiana tabacum HOM05D008110 ORTHO05D000088 1.5e-32 143.7 139 46.8
CAN.G322.83 Capsicum annuum HOM05D008110 ORTHO05D000088 1.7e-31 140.2 144 42.4
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.7e-31 140.2 124 47.6
Solyc01g108950.3 Solanum lycopersicum HOM05D008110 ORTHO05D000088 3.7e-31 139.0 141 43.3
Sopen01g051160 Solanum pennellii HOM05D008110 ORTHO05D000088 4.8e-31 138.7 141 44.0
Peaxi162Scf00016g01351 Petunia axillaris HOM05D008110 ORTHO05D000088 2.4e-30 136.3 109 47.7
Solyc01g106250.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 2.4e-30 136.3 112 48.2
PGSC0003DMG400010668 Solanum tuberosum HOM05D008110 ORTHO05D000088 5.3e-30 135.2 113 46.9
Sopen01g048640 Solanum pennellii HOM05D008110 ORTHO05D000088 7.0e-30 134.8 112 47.3
CAN.G241.1 Capsicum annuum HOM05D008110 ORTHO05D000088 8.5e-28 127.9 114 44.7
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 2.5e-27 126.3 162 42.6
CAN.G192.15 Capsicum annuum HOM05D008110 ORTHO05D000088 4.2e-27 125.6 151 38.4
Cc00_g00230 Coffea canephora HOM05D008110 ORTHO05D000088 5.5e-27 125.2 154 42.9
PGSC0003DMG400025830 Solanum tuberosum HOM05D008110 ORTHO05D000088 5.5e-27 125.2 140 40.7
CAN.G322.59 Capsicum annuum HOM05D008110 ORTHO05D000088 1.6e-26 123.6 140 43.6
Sopen02g009350 Solanum pennellii HOM05D008110 ORTHO05D000088 3.6e-26 122.5 113 46.0
Solyc01g109030.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 6.1e-26 121.7 134 41.0
Solyc02g026080.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 2.3e-25 119.8 113 46.0
Cc00_g00220 Coffea canephora HOM05D008110 ORTHO05D000088 9.8e-24 114.4 144 41.0
Migut.N02603 Erythranthe guttata HOM05D008110 ORTHO05D000088 6.3e-23 111.7 154 37.7
CAN.G555.3 Capsicum annuum HOM05D008110 ORTHO05D000088 3.1e-22 109.4 128 42.2
Migut.J01193 Erythranthe guttata HOM05D008110 ORTHO05D000088 5.9e-21 105.1 118 41.5
MSTRG.17812 Avicennia marina HOM05D008110 ORTHO05D000088 7.7e-21 104.8 96 45.8
Solyc01g108940.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 1.0e-20 104.4 87 47.1
Atru.chr9.727 Acer truncatum HOM05D008110 ORTHO05D000088 1.7e-20 103.6 104 45.2
Sopen02g006830 Solanum pennellii HOM05D008110 ORTHO05D000088 9.5e-19 97.8 88 46.6
Eucgr.I01213 Eucalyptus grandis HOM05D008110 ORTHO05D000088 1.6e-18 97.1 127 41.7
SalBow7G1050 Salvia bowleyana HOM05D008110 ORTHO05D000088 1.6e-18 97.1 144 41.0
Eucgr.A01956 Eucalyptus grandis HOM05D008110 ORTHO05D000088 2.1e-18 96.7 136 39.0
SGA_v2.0_scaffold54G19507 Striga asiatica HOM05D008110 ORTHO05D000088 2.8e-18 96.3 143 37.1
EL10Ac9g21796 Beta vulgaris HOM05D000823 ORTHO05D000088 4.0e-17 92.4 99 47.5
PGSC0003DMG400036386 Solanum tuberosum HOM05D008110 ORTHO05D000088 5.2e-17 92.0 85 43.5
SGA_v2.0_scaffold223G42874 Striga asiatica HOM05D008110 ORTHO05D000088 7.5e-16 88.2 112 33.9
Nn5g29404 Nelumbo nucifera HOM05D000823 ORTHO05D000088 4.9e-15 85.5 181 27.6
Duzib248G0315 Durio zibethinus HOM05D008110 ORTHO05D000088 1.8e-14 83.6 100 43.0
Oeu003285.1 Olea europaea HOM05D008110 ORTHO05D000088 2.4e-14 83.2 99 37.4
PGR102G2553 Punica granatum HOM05D000823 ORTHO05D000088 3.1e-14 82.8 146 30.1
PGSC0003DMG400037529 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.6e-13 80.5 77 36.4
PGSC0003DMG400044725 Solanum tuberosum HOM05D008110 ORTHO05D000088 2.0e-13 80.1 94 38.3
Sopen01g051140 Solanum pennellii HOM05D008110 ORTHO05D000088 3.5e-13 79.3 77 44.2
TWI31G0648 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 3.5e-13 79.3 99 34.3
TWI75G0037 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 3.5e-13 79.3 83 43.4
SGA_v2.0_scaffold54G19506 Striga asiatica HOM05D008110 ORTHO05D000088 5.9e-13 78.6 148 27.7
Sopen06g015150 Solanum pennellii HOM05D008110 ORTHO05D000088 1.0e-12 77.8 119 37.8
COL.COLO4_32520 Corchorus olitorius HOM05D008110 ORTHO05D000088 2.9e-12 76.3 112 38.4
Hund06201 Selenicereus undatus HOM05D000823 ORTHO05D000088 3.8e-12 75.9 70 50.0
Ciclev10028843m.g Citrus clementina HOM05D000823 ORTHO05D000088 5.0e-12 75.5 124 37.1
PGSC0003DMG400035405 Solanum tuberosum HOM05D008110 ORTHO05D000088 6.6e-12 75.1 66 45.5
Thecc.02G027900 Theobroma cacao HOM05D008110 ORTHO05D000088 1.5e-11 73.9 175 32.6
Sopen01g051220 Solanum pennellii HOM05D008110 ORTHO05D000088 1.9e-11 73.6 61 41.0
Ciclev10026137m.g Citrus clementina HOM05D000823 ORTHO05D000088 2.5e-11 73.2 138 29.0
PGSC0003DMG400045703 Solanum tuberosum HOM05D008110 ORTHO05D000088 2.5e-11 73.2 63 44.4
SalBow3G0306 Salvia bowleyana HOM05D008110 ORTHO05D000088 7.3e-11 71.6 125 30.4
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 7.3e-11 71.6 129 34.9
PGSC0003DMG400044605 Solanum tuberosum HOM05D008110 ORTHO05D000088 9.5e-11 71.2 67 43.3
CAN.G504.44 Capsicum annuum HOM05D000185 ORTHO05D000105 1.2e-10 70.9 65 43.1
Dinv26765 Davidia involucrata HOM05D008110 ORTHO05D024989 1.0e-09 67.8 92 33.7
Potri.007G035500 Populus trichocarpa HOM05D000823 ORTHO05D000088 1.0e-09 67.8 130 30.8
DCAR_022876 Daucus carota HOM05D000823 ORTHO05D000088 1.4e-09 67.4 88 36.4
THA.LOC104807272 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 2.3e-09 66.6 117 34.2
Cpa.g.sc15.87 Carica papaya HOM05D000823 ORTHO05D000088 3.1e-09 66.2 99 32.3
ClCG01G016540 Citrullus lanatus HOM05D000395 ORTHO05D000088 3.1e-09 66.2 83 33.7
Sopen01g051190 Solanum pennellii HOM05D008110 ORTHO05D000088 3.1e-09 66.2 94 38.3
Actinidia36524 Actinidia chinensis HOM05D001349 ORTHO05D001980 4.0e-09 65.9 168 29.8
CSS0000969 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 6.8e-09 65.1 90 34.4
CSS0025372 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 6.8e-09 65.1 90 34.4
Aqoxy6G00935 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 8.9e-09 64.7 166 31.3
Haze_08007 Corylus avellana HOM05D000823 ORTHO05D000088 8.9e-09 64.7 98 33.7
Haze_08013 Corylus avellana HOM05D000823 ORTHO05D000088 8.9e-09 64.7 98 33.7
Phvul.008G220000 Phaseolus vulgaris HOM05D010195 ORTHO05D000088 8.9e-09 64.7 126 33.3
CAN.G192.14 Capsicum annuum HOM05D008110 ORTHO05D000088 1.2e-08 64.3 89 39.3
MBI16_g31478_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 1.2e-08 64.3 88 35.2
Haze_15178 Corylus avellana HOM05D000235 ORTHO05D000147 1.5e-08 63.9 155 25.2
Glyma.14G055700 Glycine max HOM05D010195 ORTHO05D000088 2.0e-08 63.5 127 34.6
Rhsim02G0167600 Rhododendron simsii HOM05D000395 ORTHO05D000088 2.6e-08 63.2 42 66.7
Atru.chr2.2906 Acer truncatum HOM05D000823 ORTHO05D000088 7.5e-08 61.6 90 31.1
Manes.13G131000 Manihot esculenta HOM05D000823 ORTHO05D000088 7.5e-08 61.6 84 31.0
Sp2g29690 Schrenkiella parvula HOM05D000823 ORTHO05D000088 7.5e-08 61.6 96 28.1
Glyma.11G124000 Glycine max HOM05D010195 ORTHO05D000088 1.3e-07 60.8 100 35.0
Glyma.12G048500 Glycine max HOM05D010195 ORTHO05D000088 1.3e-07 60.8 123 30.9
EL10Ac9g21795 Beta vulgaris HOM05D000823 ORTHO05D000088 1.7e-07 60.5 85 34.1
Aa31LG1G15520 Aethionema arabicum HOM05D000823 ORTHO05D000088 2.2e-07 60.1 84 29.8
AL8G44400 Arabidopsis lyrata HOM05D000823 ORTHO05D000088 2.2e-07 60.1 96 29.2
MELO3C007521.2 Cucumis melo HOM05D000823 ORTHO05D000088 2.9e-07 59.7 83 33.7
Sed0022882 Sechium edule HOM05D000823 ORTHO05D000088 3.7e-07 59.3 142 29.6
Sabra07G0031200 Salix brachista HOM05D000823 ORTHO05D000088 4.9e-07 58.9 173 27.7
CANSAT80G0874 Cannabis sativa HOM05D000823 ORTHO05D000088 6.4e-07 58.5 146 29.5
AT5G66980 Arabidopsis thaliana HOM05D000823 ORTHO05D000088 8.3e-07 58.2 96 28.1
Carub.0008s2753 Capsella rubella HOM05D000823 ORTHO05D000088 1.1e-06 57.8 102 28.4
BraA01t00809Z Brassica rapa HOM05D006628 ORTHO05D000088 1.4e-06 57.4 88 35.2
Thhalv10014229m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 1.4e-06 57.4 88 35.2
Nn6g32142 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.4e-06 57.4 147 28.6
Cc07_g20980 Coffea canephora HOM05D000823 ORTHO05D000088 1.9e-06 57.0 88 34.1
Aa31LG10G8500 Aethionema arabicum HOM05D006628 ORTHO05D000088 2.4e-06 56.6 100 30.0
Oeu003288.1 Olea europaea HOM05D008110 ORTHO05D000088 2.4e-06 56.6 52 38.5
Aqoxy4G01727 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 3.2e-06 56.2 83 32.5
PSO675G1309 Papaver somniferum HOM05D000395 ORTHO05D000088 3.2e-06 56.2 91 27.5
A09p46330 Brassica napus HOM05D006628 ORTHO05D000088 4.1e-06 55.8 99 33.3
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 5.4e-06 55.5 178 24.2
THA.LOC104807340 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 5.4e-06 55.5 155 31.6
Glyma.12G049900 Glycine max HOM05D010195 ORTHO05D000088 9.2e-06 54.7 112 29.5


User provided reference genes

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