Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024757 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 7.3e-120 434.1 252 100.0
CSS0008003 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 7.6e-101 370.9 227 93.8
Actinidia02522 Actinidia chinensis HOM05D000086 ORTHO05D002912 2.0e-21 107.1 106 58.5
Dinv38814 Davidia involucrata HOM05D000086 ORTHO05D002912 6.0e-21 105.5 106 60.4
Cpa.g.sc15.6 Carica papaya HOM05D000086 ORTHO05D002912 7.3e-19 98.6 106 53.8
DCAR_030429 Daucus carota HOM05D000086 ORTHO05D002912 7.3e-19 98.6 106 52.8
Dinv37502 Davidia involucrata HOM05D000086 ORTHO05D002912 7.3e-19 98.6 146 45.2
GSVIVG01019592001 Vitis vinifera HOM05D000086 ORTHO05D002912 9.5e-19 98.2 106 58.5
Eucgr.D01770 Eucalyptus grandis HOM05D000086 ORTHO05D002912 1.6e-18 97.4 108 61.1
Haze_09101 Corylus avellana HOM05D000086 ORTHO05D002912 2.1e-18 97.1 106 54.7
Potri.001G088400 Populus trichocarpa HOM05D000086 ORTHO05D002912 6.2e-18 95.5 109 51.4
Thecc.08G165900 Theobroma cacao HOM05D000086 ORTHO05D002912 8.0e-18 95.1 107 50.5
Manes.02G007100 Manihot esculenta HOM05D000086 ORTHO05D002912 3.1e-17 93.2 106 50.0
Duzib116G0331 Durio zibethinus HOM05D000086 ORTHO05D002912 5.2e-17 92.4 103 52.4
Actinidia27309 Actinidia chinensis HOM05D000086 ORTHO05D002912 8.9e-17 91.7 103 52.4
RcHm_v2.0_Chr7g0186121 Rosa chinensis HOM05D000086 ORTHO05D002912 1.2e-16 91.3 106 57.5
Ciclev10024464m.g Citrus clementina HOM05D000086 ORTHO05D002912 2.6e-16 90.1 107 50.5
Lj2A163T68 Lonicera japonica HOM05D000086 ORTHO05D002912 4.4e-16 89.4 104 52.9
Prupe.5G124100 Prunus persica HOM05D000086 ORTHO05D002912 4.4e-16 89.4 108 50.9
CSS0041085 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 9.8e-16 88.2 106 47.2
Lsat_1_v5_gn_6_71661 Lactuca sativa HOM05D000086 ORTHO05D002912 9.8e-16 88.2 106 50.0
Manes.01G052600 Manihot esculenta HOM05D000086 ORTHO05D002912 9.8e-16 88.2 106 48.1
Nn1g00280 Nelumbo nucifera HOM05D000086 ORTHO05D002912 9.8e-16 88.2 106 48.1
PGR031G3866 Punica granatum HOM05D000086 ORTHO05D002912 9.8e-16 88.2 104 51.0
CANSAT21G1707 Cannabis sativa HOM05D000086 ORTHO05D002912 2.9e-15 86.7 109 46.8
COL.COLO4_25065 Corchorus olitorius HOM05D000086 ORTHO05D002912 2.9e-15 86.7 103 51.5
ECA233G6093 Erigeron canadensis HOM05D000086 ORTHO05D002912 2.9e-15 86.7 106 47.2
Sabra01G0064700 Salix brachista HOM05D000086 ORTHO05D002912 3.7e-15 86.3 106 50.0
Nitab4.5_0002367g0040 Nicotiana tabacum HOM05D000086 ORTHO05D002912 4.9e-15 85.9 106 51.9
MBI06_g10868_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 6.4e-15 85.5 106 47.2
CSS0026020 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 8.3e-15 85.1 104 47.1
Lj6A699T66 Lonicera japonica HOM05D000086 ORTHO05D002912 8.3e-15 85.1 109 58.7
FvH4_5g11670 Fragaria vesca HOM05D000086 ORTHO05D002912 1.1e-14 84.7 106 50.9
FAN18G1358 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.1e-14 84.7 106 50.9
FAN18G4267 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.1e-14 84.7 106 50.9
Peaxi162Scf00074g00527 Petunia axillaris HOM05D000086 ORTHO05D002912 1.1e-14 84.7 106 52.8
Aqoxy7G00064 Aquilegia oxysepala HOM05D000086 ORTHO05D002912 1.4e-14 84.3 107 55.1
Atru.chr9.1938 Acer truncatum HOM05D000086 ORTHO05D002912 1.9e-14 84.0 109 66.1
QL02p029662 Quercus lobata HOM05D000086 ORTHO05D002912 1.9e-14 84.0 106 50.0
Potri.003G142600 Populus trichocarpa HOM05D000086 ORTHO05D002912 3.2e-14 83.2 106 49.1
MD06G1111300 Malus domestica HOM05D000086 ORTHO05D002912 4.1e-14 82.8 106 48.1
AUR62019872 Chenopodium quinoa HOM05D000086 ORTHO05D002912 5.4e-14 82.4 107 48.6
Lj4g0025211 Lotus japonicus HOM05D000086 ORTHO05D002912 5.4e-14 82.4 111 47.7
PSO135G0157 Papaver somniferum HOM05D000086 ORTHO05D002912 5.4e-14 82.4 111 45.0
PSO384G4716 Papaver somniferum HOM05D000086 ORTHO05D002912 5.4e-14 82.4 111 45.0
Aa31LG6G7220 Aethionema arabicum HOM05D000086 ORTHO05D002912 9.2e-14 81.6 102 50.0
Gorai.004G266400 Gossypium raimondii HOM05D000086 ORTHO05D002912 9.2e-14 81.6 112 47.3
FAN08G2033 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.2e-13 81.3 98 54.1
FAN13G2692 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.6e-13 80.9 99 52.5
CSS0039652 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.1e-13 80.5 104 47.1
Glyma.05G218700 Glycine max HOM05D000086 ORTHO05D002912 2.1e-13 80.5 107 45.8
MBI07_g24778_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 2.7e-13 80.1 106 46.2
Sp7g21970 Schrenkiella parvula HOM05D000086 ORTHO05D002912 3.5e-13 79.7 103 49.5
A01p15280 Brassica napus HOM05D000086 ORTHO05D002912 4.6e-13 79.3 102 47.1
FAN04G1292 Fragaria x ananassa HOM05D000086 ORTHO05D002912 4.6e-13 79.3 99 54.5
Gohir.A08G229500 Gossypium hirsutum HOM05D000086 ORTHO05D002912 4.6e-13 79.3 113 46.0
Gohir.D08G249800 Gossypium hirsutum HOM05D000086 ORTHO05D002912 4.6e-13 79.3 106 46.2
Glyma.08G024800 Glycine max HOM05D000086 ORTHO05D002912 6.0e-13 79.0 108 46.3
Glyma.20G066300 Glycine max HOM05D000086 ORTHO05D002912 6.0e-13 79.0 100 52.0
EL10Ac5g12948 Beta vulgaris HOM05D000086 ORTHO05D002912 1.0e-12 78.2 105 45.7
Lj6g0016186 Lotus japonicus HOM05D000086 ORTHO05D002912 1.0e-12 78.2 100 47.0
Solyc08g082680.3 Solanum lycopersicum HOM05D000086 ORTHO05D002912 1.7e-12 77.4 108 48.1
Sopen08g030900 Solanum pennellii HOM05D000086 ORTHO05D002912 1.7e-12 77.4 108 48.1
PGSC0003DMG400012137 Solanum tuberosum HOM05D000086 ORTHO05D002912 1.7e-12 77.4 108 49.1
Glyma.13G002800 Glycine max HOM05D000086 ORTHO05D002912 3.0e-12 76.6 100 46.0
Oeu022695.1 Olea europaea HOM05D000086 ORTHO05D002912 3.0e-12 76.6 99 46.5
CiPaw.12G080900 Carya illinoinensis HOM05D000086 ORTHO05D002912 3.9e-12 76.3 107 47.7
Thhalv10026391m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 5.1e-12 75.9 102 44.1
arahy.Tifrunner.gnm1.ann1.1IN0XH Arachis hypogaea HOM05D000086 ORTHO05D002912 6.6e-12 75.5 112 45.5
BcaNung04249 Brassica carinata HOM05D000086 ORTHO05D002912 6.6e-12 75.5 102 46.1
C07p53290 Brassica napus HOM05D000086 ORTHO05D002912 6.6e-12 75.5 102 46.1
BolC7t45824H Brassica oleracea HOM05D000086 ORTHO05D002912 6.6e-12 75.5 102 46.1
MSTRG.10181 Avicennia marina HOM05D002688 ORTHO05D002911 8.6e-12 75.1 104 46.2
AL7G29290 Arabidopsis lyrata HOM05D000086 ORTHO05D002912 1.1e-11 74.7 102 44.1
AT4G24015 Arabidopsis thaliana HOM05D000086 ORTHO05D002912 1.1e-11 74.7 102 44.1
BcaNung01107 Brassica carinata HOM05D000086 ORTHO05D002912 1.1e-11 74.7 102 44.1
MD14G1132500 Malus domestica HOM05D000086 ORTHO05D002912 1.1e-11 74.7 109 45.0
Sed0026122 Sechium edule HOM05D000086 ORTHO05D002912 1.1e-11 74.7 110 62.7
Sed0016681 Sechium edule HOM05D000086 ORTHO05D002912 1.5e-11 74.3 109 55.0
BcaC09g50923 Brassica carinata HOM05D000086 ORTHO05D002912 1.9e-11 73.9 103 50.5
C01p19210 Brassica napus HOM05D000086 ORTHO05D002912 1.9e-11 73.9 103 50.5
BolC1t01848H Brassica oleracea HOM05D000086 ORTHO05D002912 1.9e-11 73.9 103 50.5
Lalb_Chr16g0390721 Lupinus albus HOM05D000086 ORTHO05D002912 1.9e-11 73.9 110 44.5
BraA01t01471Z Brassica rapa HOM05D000086 ORTHO05D002912 2.5e-11 73.6 103 50.5
Cc08_g16350 Coffea canephora HOM05D000086 ORTHO05D002912 2.5e-11 73.6 106 49.1
Phvul.002G300500 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 2.5e-11 73.6 107 42.1
VMungo0540G0071 Vigna mungo HOM05D000086 ORTHO05D002912 2.5e-11 73.6 101 51.5
Oeu030887.1 Olea europaea HOM05D000086 ORTHO05D002912 3.3e-11 73.2 103 42.7
A03p54910 Brassica napus HOM05D000086 ORTHO05D002912 4.3e-11 72.8 102 48.0
BraA03t14556Z Brassica rapa HOM05D000086 ORTHO05D002912 4.3e-11 72.8 102 45.1
CARHR231420 Cardamine hirsuta HOM05D000086 ORTHO05D002912 4.3e-11 72.8 102 44.1
Lalb_Chr09g0332221 Lupinus albus HOM05D000086 ORTHO05D002912 4.3e-11 72.8 110 44.5
ClCG01G001780 Citrullus lanatus HOM05D000086 ORTHO05D002912 5.6e-11 72.4 111 62.2
arahy.Tifrunner.gnm1.ann1.60J8GE Arachis hypogaea HOM05D000086 ORTHO05D002912 7.3e-11 72.0 112 44.6
VMungo0251G0743 Vigna mungo HOM05D000086 ORTHO05D002912 9.5e-11 71.6 107 42.1
CiPaw.11G117600 Carya illinoinensis HOM05D000086 ORTHO05D002912 1.6e-10 70.9 106 61.3
CSS0007727 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.1e-10 70.5 107 50.5
Lsat_1_v5_gn_6_9501 Lactuca sativa HOM05D000086 ORTHO05D002912 2.1e-10 70.5 99 53.5
Psat5g108400 Pisum sativum HOM05D000086 ORTHO05D002912 2.1e-10 70.5 100 43.0
CSS0003750 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 3.6e-10 69.7 107 43.9
Nn3g18960 Nelumbo nucifera HOM05D000086 ORTHO05D002912 3.6e-10 69.7 95 45.3
Hma1.2p1_0440F.1_g153540 Hydrangea macrophylla HOM05D000086 ORTHO05D002912 4.7e-10 69.3 105 44.8
Medtr3g081030 Medicago truncatula HOM05D000086 ORTHO05D002912 4.7e-10 69.3 105 43.8
HanXRQChr10g0316891 Helianthus annuus HOM05D000086 ORTHO05D002912 1.1e-09 68.2 97 44.3
Lalb_Chr05g0223981 Lupinus albus HOM05D000086 ORTHO05D002912 1.4e-09 67.8 110 44.5
HanXRQChr07g0190771 Helianthus annuus HOM05D000086 ORTHO05D002912 1.8e-09 67.4 96 46.9
MELO3C005760.2 Cucumis melo HOM05D000086 ORTHO05D002912 3.1e-09 66.6 111 60.4
CsaV3_5G001920 Cucumis sativus L. HOM05D000086 ORTHO05D002912 3.1e-09 66.6 111 60.4
Phvul.006G000700 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 4.0e-09 66.2 102 50.0
TPR.G33602 Trifolium pratense HOM05D000086 ORTHO05D002912 4.0e-09 66.2 103 41.7
SGA_v2.0_scaffold64G22042 Striga asiatica HOM05D000086 ORTHO05D002912 5.2e-09 65.9 99 43.4
Medtr4g030070 Medicago truncatula HOM05D000086 ORTHO05D002912 2.2e-07 60.5 88 36.4
TPR.G4399 Trifolium pratense HOM05D000086 ORTHO05D002912 4.9e-07 59.3 105 35.2
Phvul.011G215400 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 8.3e-07 58.5 88 38.6
Solyc06g064440.3 Solanum lycopersicum HOM05D000086 ORTHO05D002912 1.1e-06 58.2 90 41.1
VMungo1127G1869 Vigna mungo HOM05D000086 ORTHO05D002912 1.4e-06 57.8 88 37.5
GSVIVG01037142001 Vitis vinifera HOM05D000086 ORTHO05D002912 1.4e-06 57.8 104 34.6
PGSC0003DMG400033135 Solanum tuberosum HOM05D000086 ORTHO05D002912 1.9e-06 57.4 90 41.1
Migut.G00009 Erythranthe guttata HOM05D000086 ORTHO05D002912 3.2e-06 56.6 98 59.2
CARHR032920 Cardamine hirsuta HOM05D000086 ORTHO05D002912 5.4e-06 55.8 89 40.4
Lj9A695T55 Lonicera japonica HOM05D000086 ORTHO05D002912 5.4e-06 55.8 88 36.4
Zm00001eb243920 Zea mays HOM05D000086 ORTHO05D002912 5.4e-06 55.8 101 30.7
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 9.2e-06 55.1 47 61.7


User provided reference genes

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