Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024724 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1466.8 791 100.0
CSS0004912 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1417.5 791 93.6
CSS0017117 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1306.6 791 90.6
CSS0049410 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1301.2 791 90.4
CSS0022979 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1275.0 791 88.7
CSS0041949 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 1.7e-191 673.7 369 89.4
CSS0031977 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112456 6.7e-127 459.1 406 75.1
CSS0043274 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D111155 6.7e-127 459.1 406 75.1
CSS0018317 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D110529 1.5e-126 458.0 406 75.1
CSS0031809 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D108891 2.5e-118 430.6 422 66.8
CSS0042992 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D111024 6.2e-117 426.0 406 70.7
CSS0026356 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112650 4.7e-48 197.2 591 31.6
CSS0014082 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112965 3.2e-44 184.5 597 32.7
Solyc05g010817.1 Solanum lycopersicum HOM05D008778 ORTHO05D003639 2.9e-21 108.2 230 30.0
Sopen00g002430 Solanum pennellii HOM05D008778 ORTHO05D003639 6.4e-21 107.1 230 30.0
Sopen00g007290 Solanum pennellii HOM05D008778 ORTHO05D003639 6.4e-21 107.1 230 30.0
FvH4_3g26742 Fragaria vesca HOM05D016656 ORTHO05D003639 4.6e-19 100.9 270 28.5
Peaxi162Scf00820g00117 Petunia axillaris HOM05D008778 ORTHO05D003639 6.0e-19 100.5 230 26.5
Sopen09g003880 Solanum pennellii HOM05D008778 ORTHO05D003639 3.0e-18 98.2 230 30.4
Peaxi162Scf00820g00119 Petunia axillaris HOM05D008778 ORTHO05D003639 3.9e-18 97.8 234 26.9
Nitab4.5_0001698g0060 Nicotiana tabacum HOM05D008778 ORTHO05D003639 5.6e-17 94.0 236 27.5
RcHm_v2.0_Chr5g0049171 Rosa chinensis HOM05D016656 ORTHO05D003639 1.4e-15 89.4 237 28.3
FvH4_5g16044 Fragaria vesca HOM05D060084 ORTHO05D046536 6.9e-15 87.0 245 28.6
CSS0044889 Camellia sinensis var. sinensis HOM05D008778 ORTHO05D003639 9.0e-15 86.7 347 26.8
Nitab4.5_0000663g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.2e-14 86.3 232 28.4
Peaxi162Scf00169g01112 Petunia axillaris HOM05D008778 ORTHO05D003639 1.5e-14 85.9 236 28.0
Nitab4.5_0001698g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 3.4e-14 84.7 371 23.5
Nitab4.5_0000663g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 9.9e-14 83.2 233 28.3
Nitab4.5_0001698g0040 Nicotiana tabacum HOM05D008778 ORTHO05D003639 6.4e-13 80.5 234 25.6
QL01p013702 Quercus lobata HOM05D009149 ORTHO05D003639 1.9e-12 79.0 347 24.5
Sabra13G0012400 Salix brachista HOM05D020966 ORTHO05D010251 4.6e-11 74.3 354 26.6
Sopen09g003890 Solanum pennellii HOM05D000006 ORTHO05D000001 4.6e-11 74.3 365 23.6
PGSC0003DMG400002681 Solanum tuberosum HOM05D008778 ORTHO05D003639 1.3e-10 72.8 382 22.8
FAN25G0588 Fragaria x ananassa HOM05D016656 ORTHO05D003639 3.9e-10 71.2 177 29.9
RcHm_v2.0_Chr2g0142701 Rosa chinensis HOM05D008702 ORTHO05D003639 1.9e-09 68.9 238 29.4
RcHm_v2.0_Chr1g0321631 Rosa chinensis HOM05D008702 ORTHO05D003639 2.5e-09 68.6 188 29.8
RcHm_v2.0_Chr2g0138191 Rosa chinensis HOM05D008702 ORTHO05D003639 3.3e-09 68.2 188 30.3
Nitab4.5_0007634g0020 Nicotiana tabacum HOM05D008778 ORTHO05D003639 9.6e-09 66.6 167 28.1
RcHm_v2.0_Chr1g0320431 Rosa chinensis HOM05D008702 ORTHO05D003639 9.6e-09 66.6 192 29.7
Cc00_g19240 Coffea canephora HOM05D009149 ORTHO05D003639 1.3e-08 66.2 224 25.0
RcHm_v2.0_Chr2g0121071 Rosa chinensis HOM05D008702 ORTHO05D003639 3.7e-08 64.7 356 25.3
RcHm_v2.0_Chr2g0152981 Rosa chinensis HOM05D008702 ORTHO05D003639 8.1e-08 63.5 354 24.6
RcHm_v2.0_Chr2g0116581 Rosa chinensis HOM05D008702 ORTHO05D003639 2.4e-07 62.0 354 24.9
FAN19G0432 Fragaria x ananassa HOM05D016497 ORTHO05D019154 5.3e-07 60.8 170 28.2
Nitab4.5_0006587g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 5.3e-07 60.8 163 23.9
FvH4_4g18552 Fragaria vesca HOM05D009149 ORTHO05D003639 1.2e-06 59.7 184 28.3
Peaxi162Scf00820g00045 Petunia axillaris HOM05D008778 ORTHO05D003639 1.2e-06 59.7 240 27.1
RcHm_v2.0_Chr7g0194611 Rosa chinensis HOM05D009149 ORTHO05D003639 1.2e-06 59.7 246 26.4
FAN25G3366 Fragaria x ananassa HOM05D016656 ORTHO05D015012 2.6e-06 58.5 139 30.2
CSS0023448 Camellia sinensis var. sinensis HOM05D013673 ORTHO05D015012 4.5e-06 57.8 162 31.5
RcHm_v2.0_Chr2g0105541 Rosa chinensis HOM05D009149 ORTHO05D003639 5.8e-06 57.4 177 28.2
RcHm_v2.0_Chr1g0350201 Rosa chinensis HOM05D009149 ORTHO05D003639 1.0e-05 56.6 176 29.0


User provided reference genes

Program Settings