Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 6.2e-70 267.3 131 100.0
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.6e-60 235.3 131 90.8
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 6.8e-45 184.1 131 73.3
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 1.4e-42 176.4 136 66.9
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 1.0e-40 170.2 155 56.8
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 9.6e-39 163.7 178 50.6
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 2.0e-36 156.0 138 57.2
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 2.6e-36 155.6 137 57.7
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 9.9e-36 153.7 135 60.0
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 1.7e-35 152.9 137 58.4
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 2.9e-35 152.1 136 56.6
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 1.4e-34 149.8 136 55.1
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 5.4e-34 147.9 135 57.8
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 9.3e-34 147.1 129 57.4
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 1.6e-33 146.4 135 55.6
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 1.6e-33 146.4 135 54.8
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.1e-33 146.0 134 56.7
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 4.6e-33 144.8 139 53.2
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 6.0e-33 144.4 135 56.3
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 7.9e-33 144.1 136 55.1
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.0e-32 143.7 134 54.5
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 1.0e-32 143.7 131 58.0
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.0e-32 143.7 135 56.3
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 1.3e-32 143.3 136 53.7
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 1.7e-32 142.9 130 56.9
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 3.9e-32 141.7 135 52.6
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 3.9e-32 141.7 135 54.1
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 3.9e-32 141.7 137 55.5
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 3.9e-32 141.7 135 54.8
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 8.7e-32 140.6 134 53.7
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 1.1e-31 140.2 136 53.7
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 1.1e-31 140.2 137 54.0
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 1.1e-31 140.2 135 53.3
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 1.9e-31 139.4 129 56.6
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.5e-31 139.0 131 55.7
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.5e-31 139.0 131 55.7
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 2.5e-31 139.0 135 52.6
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 2.5e-31 139.0 137 53.3
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 2.8e-30 135.6 136 54.4
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 2.8e-30 135.6 136 53.7
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.1e-29 133.7 132 55.3
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 1.1e-29 133.7 132 54.5
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 1.1e-29 133.7 129 51.2
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 1.4e-29 133.3 136 52.2
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 1.8e-29 132.9 136 52.9
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 3.1e-29 132.1 135 54.8
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 4.0e-29 131.7 132 53.8
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 4.0e-29 131.7 138 51.4
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 6.9e-29 131.0 139 49.6
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 6.9e-29 131.0 138 50.7
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 6.9e-29 131.0 136 48.5
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 9.0e-29 130.6 129 51.2
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 9.0e-29 130.6 135 52.6
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 1.5e-28 129.8 137 51.8
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 2.6e-28 129.0 139 51.1
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 3.4e-28 128.6 135 51.9
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 4.5e-28 128.3 136 51.5
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 5.8e-28 127.9 135 52.6
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 2.2e-27 125.9 136 50.7
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 8.4e-27 124.0 137 48.2
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.9e-26 122.9 116 56.0
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.9e-26 122.9 116 56.0
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 2.4e-26 122.5 135 46.7
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 2.4e-26 122.5 117 59.0
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 3.2e-26 122.1 135 52.6
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 2.1e-25 119.4 136 48.5
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 1.3e-24 116.7 136 41.2
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 2.3e-24 115.9 163 42.3
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 3.0e-24 115.5 136 43.4
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 3.9e-24 115.2 137 45.3
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 8.7e-24 114.0 113 55.8
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 7.4e-23 110.9 137 42.3
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 1.3e-22 110.2 153 45.8
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 3.7e-22 108.6 161 42.2
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 3.1e-21 105.5 58 84.5
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 9.0e-21 104.0 66 77.3
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 9.0e-21 104.0 66 77.3
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 2.0e-20 102.8 65 73.8
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 4.5e-20 101.7 125 41.6
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 7.6e-20 100.9 113 46.9
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.0e-19 100.5 66 69.7
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.3e-19 100.1 64 71.9
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 8.4e-19 97.4 108 45.4
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 8.4e-19 97.4 64 70.3
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.1e-18 97.1 65 73.8
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 1.4e-18 96.7 58 77.6
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 2.5e-18 95.9 130 44.6
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 7.1e-18 94.4 64 70.3
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.0e-16 90.5 53 84.9
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.0e-16 90.5 53 84.9
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 2.1e-14 82.8 65 61.5
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 5.0e-11 71.6 57 59.6
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 1.6e-09 66.6 123 28.5
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 4.6e-09 65.1 59 54.2
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 2.2e-06 56.2 56 44.6


User provided reference genes

Program Settings