Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024685 Camellia sinensis var. sinensis HOM05D007377 ORTHO05D001318 3.3e-26 120.9 60 100.0
CSS0037913 Camellia sinensis var. sinensis HOM05D007377 ORTHO05D001318 1.9e-18 95.1 101 56.4
CSS0047330 Camellia sinensis var. sinensis HOM05D007377 ORTHO05D001318 1.9e-18 95.1 101 56.4
vmacro22317 Vaccinium macrocarpon HOM05D007377 ORTHO05D001318 1.6e-17 92.0 101 55.4
Dinv22236 Davidia involucrata HOM05D000967 ORTHO05D000796 2.8e-17 91.3 101 53.5
Lj6g0015280 Lotus japonicus HOM05D007377 ORTHO05D001318 3.6e-17 90.9 102 52.9
CSS0004760 Camellia sinensis var. sinensis HOM05D007377 ORTHO05D001318 4.7e-17 90.5 91 59.3
CSS0047353 Camellia sinensis var. sinensis HOM05D007377 ORTHO05D001318 1.4e-16 89.0 57 82.5
Lalb_Chr15g0081741 Lupinus albus HOM05D007377 ORTHO05D001318 2.3e-16 88.2 101 53.5
Psat5g226320 Pisum sativum HOM05D007377 ORTHO05D001318 2.3e-16 88.2 101 51.5
Thecc.07G028800 Theobroma cacao HOM05D007377 ORTHO05D001318 2.3e-16 88.2 101 51.5
FvH4_3g23500 Fragaria vesca HOM05D007377 ORTHO05D001318 4.0e-16 87.4 101 51.5
CiPaw.12G133300 Carya illinoinensis HOM05D007377 ORTHO05D001318 5.2e-16 87.0 101 52.5
TPR.G32227 Trifolium pratense HOM05D007377 ORTHO05D001318 5.2e-16 87.0 101 51.5
arahy.Tifrunner.gnm1.ann1.A282I6 Arachis hypogaea HOM05D007377 ORTHO05D001318 6.8e-16 86.7 101 50.5
Ca_14764_v3 Cicer arietinum L. HOM05D001939 ORTHO05D002051 6.8e-16 86.7 101 50.5
arahy.Tifrunner.gnm1.ann1.T57YAK Arachis hypogaea HOM05D007377 ORTHO05D001318 8.9e-16 86.3 101 49.5
Glyma.08G321900 Glycine max HOM05D007377 ORTHO05D001318 8.9e-16 86.3 101 51.5
Glyma.18G090500 Glycine max HOM05D007377 ORTHO05D001318 8.9e-16 86.3 101 51.5
Lalb_Chr15g0081671 Lupinus albus HOM05D007377 ORTHO05D001318 8.9e-16 86.3 101 52.5
RcHm_v2.0_Chr5g0041331 Rosa chinensis HOM05D007377 ORTHO05D001318 1.2e-15 85.9 101 50.5
FAN25G2631 Fragaria x ananassa HOM05D007377 ORTHO05D001318 1.5e-15 85.5 101 50.5
FAN25G3507 Fragaria x ananassa HOM05D007377 ORTHO05D001318 1.5e-15 85.5 101 50.5
Eucgr.F00655 Eucalyptus grandis HOM05D007377 ORTHO05D001318 2.6e-15 84.7 101 49.5
Gohir.D13G141100 Gossypium hirsutum HOM05D007377 ORTHO05D001318 2.6e-15 84.7 101 50.5
Gorai.013G157900 Gossypium raimondii HOM05D007377 ORTHO05D001318 2.6e-15 84.7 101 50.5
MD03G1193900 Malus domestica HOM05D007377 ORTHO05D001318 2.6e-15 84.7 101 50.5
Nitab4.5_0000984g0030 Nicotiana tabacum HOM05D007377 ORTHO05D001318 2.6e-15 84.7 101 49.5
Nitab4.5_0002826g0030 Nicotiana tabacum HOM05D007377 ORTHO05D001318 2.6e-15 84.7 101 49.5
TWI38G0075 Tripterygium wilfordii HOM05D007377 ORTHO05D001318 2.6e-15 84.7 101 49.5
Manes.03G136902 Manihot esculenta HOM05D007377 ORTHO05D001318 3.4e-15 84.3 101 48.5
Rhsim06G0222900 Rhododendron simsii HOM05D007377 ORTHO05D001318 4.4e-15 84.0 101 53.5
Sopen07g033120 Solanum pennellii HOM05D007377 ORTHO05D001318 4.4e-15 84.0 101 47.5
PGSC0003DMG400022302 Solanum tuberosum HOM05D007377 ORTHO05D001318 4.4e-15 84.0 101 47.5
CANSAT56G2083 Cannabis sativa HOM05D007377 ORTHO05D001318 9.8e-15 82.8 101 49.5
Duzib170G0659 Durio zibethinus HOM05D007377 ORTHO05D001318 9.8e-15 82.8 101 49.5
FAN11G2811 Fragaria x ananassa HOM05D007377 ORTHO05D001318 9.8e-15 82.8 101 49.5
FAN21G0570 Fragaria x ananassa HOM05D007377 ORTHO05D001318 9.8e-15 82.8 101 49.5
PGR083G0521 Punica granatum HOM05D007377 ORTHO05D001318 9.8e-15 82.8 101 46.5
Sc26g0002620 Simmondsia chinensis HOM05D007377 ORTHO05D001318 9.8e-15 82.8 101 48.5
Solyc07g064920.3 Solanum lycopersicum HOM05D007377 ORTHO05D001318 9.8e-15 82.8 101 46.5
Eucgr.F00653 Eucalyptus grandis HOM05D007377 ORTHO05D001318 1.3e-14 82.4 101 47.5
Nn6g34450 Nelumbo nucifera HOM05D007377 ORTHO05D001318 1.3e-14 82.4 101 49.5
QL08p007408 Quercus lobata HOM05D007377 ORTHO05D001318 1.3e-14 82.4 100 50.0
GSVIVG01037716001 Vitis vinifera HOM05D007377 ORTHO05D001318 1.3e-14 82.4 101 50.5
COL.COLO4_09723 Corchorus olitorius HOM05D007377 ORTHO05D001318 1.7e-14 82.0 101 48.5
Potri.015G137600 Populus trichocarpa HOM05D007377 ORTHO05D001318 2.9e-14 81.3 100 48.0
Prupe.4G222800 Prunus persica HOM05D007377 ORTHO05D001318 2.9e-14 81.3 101 48.5
CARHR234430 Cardamine hirsuta HOM05D007377 ORTHO05D001318 3.7e-14 80.9 101 48.5
Aa31LG5G12120 Aethionema arabicum HOM05D007377 ORTHO05D001318 6.4e-14 80.1 101 48.5
Phvul.006G048200 Phaseolus vulgaris HOM05D007377 ORTHO05D001318 6.4e-14 80.1 101 48.5
TWI38G0751 Tripterygium wilfordii HOM05D007377 ORTHO05D001318 6.4e-14 80.1 101 47.5
Thhalv10026656m.g Eutrema salsugineum HOM05D007377 ORTHO05D001318 8.3e-14 79.7 101 47.5
Aqoxy1G04156 Aquilegia oxysepala HOM05D007377 ORTHO05D001318 1.1e-13 79.3 101 48.5
Cpa.g.sc284.9 Carica papaya HOM05D007377 ORTHO05D001318 1.1e-13 79.3 101 46.5
DCAR_030723 Daucus carota HOM05D007377 ORTHO05D001318 1.1e-13 79.3 101 47.5
Carub.0007s1403 Capsella rubella HOM05D007377 ORTHO05D001318 1.4e-13 79.0 101 47.5
Cfa020282 Carpinus fangiana HOM05D053328 ORTHO05D001318 1.9e-13 78.6 43 86.0
CDE02G1939 Ceratophyllum demersum HOM05D007377 ORTHO05D001318 2.4e-13 78.2 100 46.0
Medtr3g054160 Medicago truncatula HOM05D007377 ORTHO05D001318 2.4e-13 78.2 45 82.2
Peaxi162Scf00235g00615 Petunia axillaris HOM05D007377 ORTHO05D001318 3.2e-13 77.8 90 50.0
AL7G26030 Arabidopsis lyrata HOM05D007377 ORTHO05D001318 4.1e-13 77.4 101 47.5
CAN.G337.62 Capsicum annuum HOM05D007377 ORTHO05D001318 4.1e-13 77.4 101 45.5
Cc05_g14250 Coffea canephora HOM05D007377 ORTHO05D001318 4.1e-13 77.4 101 46.5
MBI19_g29450_MAGBIO Magnolia biondii HOM05D007377 ORTHO05D001318 4.1e-13 77.4 43 81.4
Ciclev10010012m.g Citrus clementina HOM05D007377 ORTHO05D001318 9.2e-13 76.3 101 45.5
AT4G26810 Arabidopsis thaliana HOM05D007377 ORTHO05D001318 1.2e-12 75.9 100 46.0
ECA240G1072 Erigeron canadensis HOM05D007377 ORTHO05D001318 2.1e-12 75.1 101 44.6
SGA_v2.0_scaffold19G08742 Striga asiatica HOM05D007377 ORTHO05D001318 2.1e-12 75.1 101 42.6
SGA_v2.0_scaffold79G25647 Striga asiatica HOM05D007377 ORTHO05D001318 2.1e-12 75.1 101 42.6
TAR626G1964 Trochodendron aralioides HOM05D007377 ORTHO05D001318 2.1e-12 75.1 50 76.0
ClCG04G002280 Citrullus lanatus HOM05D007377 ORTHO05D001318 2.7e-12 74.7 101 46.5
PSO210G4797 Papaver somniferum HOM05D007377 ORTHO05D001318 3.5e-12 74.3 101 44.6
Hund23200 Selenicereus undatus HOM05D007377 ORTHO05D001318 4.6e-12 73.9 101 43.6
CDE11G1083 Ceratophyllum demersum HOM05D007377 ORTHO05D001318 6.0e-12 73.6 45 75.6
Migut.M01714 Erythranthe guttata HOM05D007377 ORTHO05D001318 7.8e-12 73.2 101 43.6
THA.LOC104817679 Tarenaya hassleriana HOM05D007377 ORTHO05D001318 7.8e-12 73.2 43 81.4
CsaV3_4G030840 Cucumis sativus L. HOM05D007377 ORTHO05D001318 1.0e-11 72.8 101 45.5
Lsat_1_v5_gn_9_93280 Lactuca sativa HOM05D007377 ORTHO05D001318 1.7e-11 72.0 97 45.4
EL10Ac4g07701 Beta vulgaris HOM05D007377 ORTHO05D001318 2.3e-11 71.6 101 43.6
A01p18050 Brassica napus HOM05D007377 ORTHO05D001318 2.3e-11 71.6 100 44.0
BraA01t01760Z Brassica rapa HOM05D007377 ORTHO05D001318 2.3e-11 71.6 100 44.0
HanXRQChr03g0076811 Helianthus annuus HOM05D007377 ORTHO05D001318 2.3e-11 71.6 43 79.1
Sp7g24790 Schrenkiella parvula HOM05D007377 ORTHO05D001318 2.3e-11 71.6 100 44.0
BcaB03g12510 Brassica carinata HOM05D007377 ORTHO05D001318 3.0e-11 71.2 97 44.3
A08p20700 Brassica napus HOM05D007377 ORTHO05D001318 3.0e-11 71.2 99 43.4
BraA08t34024Z Brassica rapa HOM05D007377 ORTHO05D001318 3.0e-11 71.2 99 43.4
BcaC07g38252 Brassica carinata HOM05D007377 ORTHO05D001318 3.9e-11 70.9 99 43.4
C08p09980 Brassica napus HOM05D007377 ORTHO05D001318 3.9e-11 70.9 99 43.4
BolC8t48675H Brassica oleracea HOM05D007377 ORTHO05D001318 3.9e-11 70.9 99 43.4
C01p23010 Brassica napus HOM05D007377 ORTHO05D001318 5.1e-11 70.5 100 43.0
BolC1t02235H Brassica oleracea HOM05D007377 ORTHO05D001318 5.1e-11 70.5 100 43.0
MELO3C014274.2 Cucumis melo HOM05D007377 ORTHO05D001318 5.1e-11 70.5 50 74.0
SalBow2G0902 Salvia bowleyana HOM05D007377 ORTHO05D001318 6.6e-11 70.1 101 41.6
Oeu013118.1 Olea europaea HOM05D007377 ORTHO05D001318 2.5e-10 68.2 101 41.6
SHI26574 Sapria himalayana HOM05D007377 ORTHO05D001318 2.5e-10 68.2 50 68.0
Sed0005824 Sechium edule HOM05D007377 ORTHO05D001318 3.3e-10 67.8 50 70.0
MSTRG.6957 Avicennia marina HOM05D007377 ORTHO05D001318 9.5e-10 66.2 43 72.1
Os09g0133000 Oryza sativa ssp. japonica HOM05D007377 ORTHO05D001318 8.1e-09 63.2 42 61.9
Sabra15G0149000 Salix brachista HOM05D007377 ORTHO05D001318 2.9e-06 54.7 87 40.2
unitig_46.g18284 Utricularia gibba HOM05D007377 ORTHO05D001318 3.7e-06 54.3 43 55.8


User provided reference genes

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