Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 9.6e-311 1069.3 540 100.0
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 5.5e-258 894.0 542 83.8
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 9.8e-247 856.7 545 79.6
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 1.0e-243 846.7 535 79.6
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.0e-243 846.7 542 80.6
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 1.0e-240 836.6 536 78.4
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.3e-238 829.7 546 78.8
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 4.1e-237 824.7 540 77.8
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 7.0e-237 823.9 549 77.0
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 1.1e-234 816.6 542 76.8
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 1.5e-234 816.2 541 76.5
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 2.5e-234 815.5 544 77.8
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 1.2e-233 813.1 542 76.8
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 1.6e-233 812.8 535 78.1
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 3.6e-233 811.6 529 77.3
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 3.6e-233 811.6 528 76.9
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 4.7e-233 811.2 542 77.1
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 5.2e-232 807.7 543 76.2
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.5e-231 806.2 543 76.1
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 2.0e-231 805.8 535 76.3
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.0e-231 805.8 542 76.0
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 5.8e-231 804.3 542 75.8
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 1.3e-230 803.1 542 75.3
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 8.3e-230 800.4 542 75.1
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 1.9e-229 799.3 543 75.3
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 5.4e-229 797.7 542 73.8
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 7.0e-229 797.3 542 75.6
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 9.2e-229 797.0 542 75.8
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 2.0e-228 795.8 542 74.5
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 3.5e-228 795.0 525 77.1
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 6.6e-227 790.8 530 76.2
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 3.3e-226 788.5 533 75.0
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 9.5e-226 786.9 526 74.9
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 1.2e-225 786.6 538 73.2
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 2.1e-225 785.8 541 74.9
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 4.7e-225 784.6 601 70.2
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 6.2e-225 784.3 544 74.4
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.1e-224 783.5 541 72.3
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 2.3e-224 782.3 544 74.6
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 3.1e-224 781.9 522 74.7
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.5e-223 779.6 522 75.5
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 2.6e-223 778.9 528 75.4
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 3.4e-223 778.5 526 74.3
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 4.4e-223 778.1 525 75.2
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 5.8e-223 777.7 577 69.8
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 5.8e-223 777.7 526 75.5
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 5.8e-223 777.7 519 75.5
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 1.7e-222 776.2 531 74.0
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 2.9e-222 775.4 534 73.6
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 3.7e-222 775.0 526 74.5
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 3.7e-222 775.0 526 74.5
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 6.4e-222 774.2 523 74.6
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.4e-221 773.1 528 73.9
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.4e-221 772.3 531 72.1
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 2.4e-221 772.3 527 74.2
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 4.1e-221 771.5 546 71.4
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 4.1e-221 771.5 541 71.3
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 7.1e-221 770.8 529 74.5
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.6e-220 769.6 523 74.6
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 2.1e-220 769.2 546 71.2
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.5e-220 768.5 526 75.7
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 7.8e-220 767.3 544 71.3
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 1.3e-219 766.5 544 73.9
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 1.3e-219 766.5 556 72.1
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 1.5e-218 763.1 545 71.0
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 3.3e-218 761.9 545 70.8
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 3.3e-218 761.9 545 70.8
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 9.5e-218 760.4 544 70.6
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 2.1e-217 759.2 545 70.6
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.6e-217 758.4 526 71.9
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 3.6e-217 758.4 525 73.5
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 8.1e-217 757.3 543 70.9
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.1e-216 755.4 534 71.0
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 5.2e-216 754.6 544 70.0
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.4e-213 746.5 486 79.4
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 2.1e-212 742.7 541 70.6
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 2.7e-212 742.3 498 75.9
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 3.0e-211 738.8 541 69.1
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 6.6e-211 737.6 560 68.2
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 5.6e-210 734.6 521 71.4
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 5.6e-210 734.6 552 67.9
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 6.2e-209 731.1 476 77.9
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.1e-208 728.8 488 75.4
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 6.9e-208 727.6 521 71.6
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 9.0e-208 727.2 530 70.2
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 6.4e-206 721.1 517 71.0
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 1.1e-205 720.3 531 69.7
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 3.3e-202 708.8 495 72.9
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 3.4e-199 698.7 517 68.7
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 3.8e-198 695.3 523 67.5
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 5.4e-197 691.4 543 65.9
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 1.9e-194 682.9 521 66.0
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 4.8e-193 678.3 598 64.7
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 9.9e-191 670.6 532 66.0
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 1.4e-181 640.2 410 78.5
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 3.2e-181 639.0 549 62.7
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.5e-175 620.2 501 65.7
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 6.7e-171 604.7 407 75.4
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 7.7e-167 591.3 405 73.6
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.7e-135 486.5 554 50.5
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 3.3e-133 479.6 351 72.4
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 7.5e-130 468.4 546 50.4
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 5.2e-115 419.1 291 72.9
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 6.4e-113 412.1 547 43.0
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 4.6e-111 406.0 542 43.5
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 7.8e-111 405.2 519 43.2
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 3.0e-110 403.3 289 71.3
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 4.3e-109 399.4 261 74.7
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 4.7e-108 396.0 269 71.0
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 5.8e-106 389.0 553 41.0
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 1.7e-105 387.5 315 62.9
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 2.3e-102 377.1 540 40.4
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.2e-88 329.7 313 59.4
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 6.6e-86 322.4 421 42.0
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 4.9e-81 306.2 181 81.8
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 4.2e-72 276.6 624 31.4
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.1e-62 243.0 287 49.5
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.8e-60 237.3 222 59.5
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.3e-54 217.6 162 69.1
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 5.3e-51 206.5 152 67.8
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 7.7e-50 202.6 703 26.6
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.1e-48 198.7 98 93.9
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 7.2e-48 196.1 174 58.6
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 3.0e-46 190.7 132 75.8
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.7e-44 184.9 127 75.6
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 7.2e-40 169.5 115 72.2
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 3.7e-28 130.6 179 41.3
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.2e-26 125.6 97 61.9
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 2.9e-25 120.9 77 77.9
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.0e-18 98.2 95 51.6
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.5e-16 92.0 110 47.3
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 4.2e-16 90.5 51 88.2
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 7.8e-10 69.7 111 35.1
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 1.2e-07 62.4 52 67.3
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 1.2e-07 62.4 190 29.5
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 3.1e-06 57.8 111 33.3
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 8.9e-06 56.2 40 72.5
MCO14G031 Micromonas commoda HOM05D018879 ORTHO05D018932 8.9e-06 56.2 443 24.6
MCO14G228 Micromonas commoda HOM05D018879 ORTHO05D018932 8.9e-06 56.2 443 24.6


User provided reference genes

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