Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 7.1e-259 896.7 451 100.0
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 1.5e-203 713.0 454 80.0
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.9e-195 686.0 333 100.0
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 3.4e-192 675.2 456 74.8
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 1.5e-187 659.8 460 72.4
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 4.4e-184 648.3 391 80.6
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 3.0e-180 635.6 457 70.2
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 8.1e-178 627.5 450 68.4
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 3.1e-177 625.5 463 66.5
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 5.2e-177 624.8 465 68.0
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 3.4e-176 622.1 591 59.7
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 5.8e-176 621.3 455 67.5
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 2.2e-175 619.4 454 68.9
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 2.2e-175 619.4 485 67.4
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 2.4e-174 615.9 418 70.3
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.4e-174 615.9 418 70.3
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 4.1e-174 615.1 456 67.8
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 9.2e-174 614.0 471 66.5
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.6e-173 613.2 462 69.3
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 4.6e-173 611.7 393 75.3
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 7.8e-173 610.9 439 68.8
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 7.8e-173 610.9 468 65.2
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.5e-171 606.7 469 65.9
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 3.3e-171 605.5 458 67.0
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 5.6e-171 604.7 461 66.4
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 7.3e-171 604.4 398 71.6
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.6e-170 603.2 420 68.8
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 6.2e-170 601.3 447 68.7
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.8e-169 597.8 475 64.2
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 6.8e-169 597.8 449 67.7
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 6.8e-169 597.8 449 68.6
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 2.6e-168 595.9 435 69.0
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 3.4e-168 595.5 395 71.9
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 4.4e-168 595.1 449 65.3
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.8e-168 594.7 391 74.2
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 7.6e-168 594.3 435 68.7
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.3e-167 593.6 391 74.2
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.3e-167 593.6 439 69.5
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 2.2e-167 592.8 460 65.2
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 2.9e-167 592.4 448 65.8
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 8.4e-167 590.9 448 65.6
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 1.9e-166 589.7 454 66.5
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.9e-166 589.7 402 69.4
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 7.1e-166 587.8 446 64.8
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.6e-165 586.6 488 61.7
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 2.1e-165 586.3 367 75.2
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 3.5e-165 585.5 371 77.1
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 4.6e-165 585.1 447 67.1
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 6.0e-165 584.7 443 65.5
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 3.9e-164 582.0 390 72.1
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 5.6e-163 578.2 449 65.0
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 5.6e-163 578.2 458 65.5
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.6e-163 578.2 401 69.8
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 4.7e-162 575.1 455 63.3
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 6.2e-162 574.7 445 63.6
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 6.2e-162 574.7 479 61.4
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 1.1e-161 573.9 406 67.2
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 1.4e-161 573.5 438 65.8
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 1.8e-161 573.2 417 66.4
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 1.8e-161 573.2 417 66.4
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.1e-161 572.4 401 69.1
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 5.2e-161 571.6 466 63.1
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 6.9e-161 571.2 395 68.4
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 6.9e-161 571.2 395 68.4
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 1.2e-160 570.5 446 63.2
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 2.0e-160 569.7 404 66.6
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 2.6e-160 569.3 395 68.1
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 2.6e-160 569.3 451 62.7
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 9.9e-160 567.4 329 82.1
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 1.3e-159 567.0 409 66.3
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 1.7e-159 566.6 484 64.0
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 2.2e-159 566.2 452 63.1
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 2.2e-159 566.2 446 63.9
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 4.9e-159 565.1 458 61.4
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 6.4e-159 564.7 462 61.7
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 8.4e-159 564.3 462 61.7
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 1.9e-158 563.1 445 63.1
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 7.1e-158 561.2 389 69.2
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 1.6e-157 560.1 443 62.1
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 2.1e-157 559.7 366 71.3
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 3.5e-157 558.9 443 61.4
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 3.5e-157 558.9 478 62.3
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 3.5e-157 558.9 388 69.1
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 4.6e-157 558.5 473 62.6
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 7.8e-157 557.8 444 61.7
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 1.3e-156 557.0 452 63.1
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 3.0e-156 555.8 444 61.7
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 3.0e-156 555.8 444 61.7
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 6.6e-156 554.7 384 70.1
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 1.9e-155 553.1 443 63.2
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 2.5e-155 552.7 451 64.1
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 8.1e-154 547.7 417 64.7
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 1.5e-152 543.5 468 60.5
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 2.0e-152 543.1 443 62.3
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 9.9e-152 540.8 356 72.8
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 1.1e-150 537.3 411 65.7
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 2.4e-150 536.2 548 52.2
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 3.5e-149 532.3 431 61.5
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 4.6e-149 531.9 362 67.4
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 1.3e-148 530.4 444 61.3
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 5.1e-148 528.5 373 69.4
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 6.7e-148 528.1 362 68.5
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 6.7e-148 528.1 357 68.3
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 1.1e-147 527.3 445 60.4
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 4.3e-147 525.4 428 63.1
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.8e-146 522.7 333 74.5
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 4.0e-145 518.8 415 61.9
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 2.0e-144 516.5 450 61.6
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 2.6e-144 516.2 399 63.9
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 7.1e-142 508.1 333 80.5
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 3.9e-140 502.3 376 64.9
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 3.9e-140 502.3 376 64.9
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 9.6e-139 497.7 378 66.7
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 1.6e-138 496.9 466 58.2
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 3.7e-138 495.7 309 77.0
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 8.2e-138 494.6 410 61.2
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.4e-137 493.8 378 66.4
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 1.8e-137 493.4 407 61.4
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 5.3e-137 491.9 358 65.9
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 9.3e-134 481.1 411 60.6
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 1.9e-131 473.4 385 57.1
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 2.6e-128 463.0 382 59.4
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 1.7e-127 460.3 366 55.5
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 5.5e-126 455.3 361 63.2
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 2.7e-125 453.0 293 72.4
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 6.3e-122 441.8 353 57.8
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 5.5e-118 428.7 399 52.6
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 6.7e-116 421.8 382 55.8
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 8.8e-108 394.8 299 64.2
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 1.1e-107 394.4 248 74.6
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 3.7e-106 389.4 399 49.9
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 1.1e-105 387.9 255 72.9
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 1.1e-102 377.9 217 79.7
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 4.2e-94 349.4 206 80.1
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 5.4e-89 332.4 281 65.5
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 1.3e-79 301.2 365 43.0
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 3.5e-64 250.0 300 42.3
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 2.1e-61 240.7 297 44.1
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.1e-54 218.4 176 63.1
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 5.4e-41 172.9 208 51.0
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 3.9e-39 166.8 98 75.5
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 6.2e-37 159.5 83 88.0
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 6.5e-26 122.9 77 74.0
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 1.1e-20 105.5 108 51.9
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 5.0e-18 96.7 95 51.6
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.5e-17 94.4 62 71.0
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 5.5e-17 93.2 93 50.5
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 6.1e-16 89.7 72 62.5
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.9e-15 87.0 55 70.9
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.9e-15 87.0 55 70.9
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.9e-15 87.0 55 70.9
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.1e-14 85.5 55 69.1
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.1e-14 85.5 54 70.4
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 5.7e-14 83.2 54 68.5
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 2.9e-10 70.9 50 68.0
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 4.6e-08 63.5 59 54.2
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.5e-06 57.8 35 71.4
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.5e-06 57.8 35 71.4


User provided reference genes

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