Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024622 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D009127 2.0e-33 145.2 74 100.0
Actinidia07672 Actinidia chinensis HOM05D001718 ORTHO05D009127 1.6e-27 125.6 69 91.3
Dinv30688 Davidia involucrata HOM05D001718 ORTHO05D009127 3.1e-26 121.3 69 88.4
TAR627G0448 Trochodendron aralioides HOM05D001718 ORTHO05D009127 4.0e-26 120.9 69 84.1
Gohir.D05G153300 Gossypium hirsutum HOM05D001718 ORTHO05D009127 1.2e-25 119.4 69 79.7
Gorai.009G157600 Gossypium raimondii HOM05D001718 ORTHO05D009127 1.2e-25 119.4 69 79.7
RcHm_v2.0_Chr5g0013001 Rosa chinensis HOM05D001718 ORTHO05D009127 1.3e-24 115.9 69 81.2
Thecc.06G157000 Theobroma cacao HOM05D001718 ORTHO05D009127 1.3e-24 115.9 69 78.3
CAN.G257.42 Capsicum annuum HOM05D001718 ORTHO05D009127 1.7e-24 115.5 69 81.2
Duzib160G0314 Durio zibethinus HOM05D001718 ORTHO05D009127 1.7e-24 115.5 69 76.8
FvH4_3g06310 Fragaria vesca HOM05D001718 ORTHO05D009127 1.7e-24 115.5 69 79.7
FAN21G3435 Fragaria x ananassa HOM05D001718 ORTHO05D009127 1.7e-24 115.5 69 79.7
FAN25G0342 Fragaria x ananassa HOM05D001718 ORTHO05D009127 1.7e-24 115.5 69 79.7
COL.COLO4_22783 Corchorus olitorius HOM05D001718 ORTHO05D009127 2.2e-24 115.2 69 78.3
ClCG03G007140 Citrullus lanatus HOM05D001718 ORTHO05D009127 2.9e-24 114.8 69 78.3
Sopen02g020270 Solanum pennellii HOM05D001718 ORTHO05D009127 2.9e-24 114.8 69 79.7
PGSC0003DMG400003069 Solanum tuberosum HOM05D001718 ORTHO05D009127 2.9e-24 114.8 69 79.7
GSVIVG01021388001 Vitis vinifera HOM05D001718 ORTHO05D009127 2.9e-24 114.8 69 81.2
Ciclev10018134m.g Citrus clementina HOM05D001718 ORTHO05D009127 3.8e-24 114.4 69 78.3
FAN11G0109 Fragaria x ananassa HOM05D001718 ORTHO05D009127 3.8e-24 114.4 68 79.4
Sed0003414 Sechium edule HOM05D001718 ORTHO05D009127 3.8e-24 114.4 69 78.3
Peaxi162Scf00022g00005 Petunia axillaris HOM05D001718 ORTHO05D009127 4.9e-24 114.0 69 78.3
Nn3g20877 Nelumbo nucifera HOM05D001718 ORTHO05D009127 1.1e-23 112.8 69 75.4
Prupe.4G074500 Prunus persica HOM05D001718 ORTHO05D009127 1.4e-23 112.5 69 78.3
MD05G1291100 Malus domestica HOM05D001718 ORTHO05D009127 1.9e-23 112.1 69 78.3
Nitab4.5_0008782g0050 Nicotiana tabacum HOM05D001718 ORTHO05D009127 1.9e-23 112.1 69 78.3
CiPaw.10G093900 Carya illinoinensis HOM05D001718 ORTHO05D009127 3.2e-23 111.3 69 76.8
Solyc02g071190.4 Solanum lycopersicum HOM05D001718 ORTHO05D009127 3.2e-23 111.3 69 78.3
VMungo0251G3449 Vigna mungo HOM05D001718 ORTHO05D009127 4.2e-23 110.9 69 76.8
Oeu021517.2 Olea europaea HOM05D001718 ORTHO05D009127 5.4e-23 110.5 69 75.4
Sc05g0006560 Simmondsia chinensis HOM05D001718 ORTHO05D009127 5.4e-23 110.5 69 76.8
Cc09_g09570 Coffea canephora HOM05D001718 ORTHO05D009127 7.1e-23 110.2 69 75.4
MELO3C002710.2 Cucumis melo HOM05D001718 ORTHO05D009127 7.1e-23 110.2 69 75.4
Nitab4.5_0010964g0040 Nicotiana tabacum HOM05D001718 ORTHO05D009127 7.1e-23 110.2 69 76.8
Glyma.05G165100 Glycine max HOM05D001718 ORTHO05D009127 9.3e-23 109.8 69 73.9
Cpa.g.sc17.120 Carica papaya HOM05D001718 ORTHO05D009127 2.1e-22 108.6 69 75.4
Cfa001002 Carpinus fangiana HOM05D001718 ORTHO05D009127 2.1e-22 108.6 68 77.9
Phvul.002G245300 Phaseolus vulgaris HOM05D001718 ORTHO05D009127 2.1e-22 108.6 69 75.4
Potri.011G078700 Populus trichocarpa HOM05D001718 ORTHO05D009127 2.7e-22 108.2 69 76.8
CsaV3_1G032720 Cucumis sativus L. HOM05D001718 ORTHO05D009127 3.5e-22 107.8 68 75.0
PSO675G6203 Papaver somniferum HOM05D001718 ORTHO05D009127 3.5e-22 107.8 69 73.9
Medtr8g088150 Medicago truncatula HOM05D001718 ORTHO05D009127 4.6e-22 107.5 69 71.0
SalBow8G1215 Salvia bowleyana HOM05D001718 ORTHO05D009127 6.0e-22 107.1 69 73.9
TWI73G1302 Tripterygium wilfordii HOM05D001718 ORTHO05D009127 6.0e-22 107.1 69 76.8
Psat7g065680 Pisum sativum HOM05D001718 ORTHO05D009127 7.8e-22 106.7 68 72.1
TPR.G6759 Trifolium pratense HOM05D001718 ORTHO05D009127 1.0e-21 106.3 69 71.0
Atru.chr10.1377 Acer truncatum HOM05D001718 ORTHO05D009127 1.3e-21 105.9 69 72.5
Ca_17863_v3 Cicer arietinum L. HOM05D001718 ORTHO05D009127 1.3e-21 105.9 68 72.1
ATR0304G034 Amborella trichopoda HOM05D001718 ORTHO05D009127 1.7e-21 105.5 69 73.9
arahy.Tifrunner.gnm1.ann1.FW0XD9 Arachis hypogaea HOM05D001718 ORTHO05D009127 1.7e-21 105.5 69 72.5
arahy.Tifrunner.gnm1.ann1.UN6DU1 Arachis hypogaea HOM05D001718 ORTHO05D009127 1.7e-21 105.5 69 72.5
DCAR_031456 Daucus carota HOM05D001718 ORTHO05D009127 1.7e-21 105.5 70 72.9
MBI07_g07823_MAGBIO Magnolia biondii HOM05D001718 ORTHO05D009127 1.7e-21 105.5 69 71.0
CANSAT35G1248 Cannabis sativa HOM05D001718 ORTHO05D009127 3.9e-21 104.4 69 71.0
Lj4g0003565 Lotus japonicus HOM05D001718 ORTHO05D009127 3.9e-21 104.4 69 72.5
SGA_v2.0_scaffold333G49018 Striga asiatica HOM05D001718 ORTHO05D009127 3.9e-21 104.4 69 72.5
PGR042G3072 Punica granatum HOM05D001718 ORTHO05D009127 5.1e-21 104.0 69 72.5
ECA234G1487 Erigeron canadensis HOM05D001718 ORTHO05D009127 8.7e-21 103.2 69 72.5
Lalb_Chr07g0186051 Lupinus albus HOM05D001718 ORTHO05D009127 1.1e-20 102.8 69 71.0
CDE09G1182 Ceratophyllum demersum HOM05D001718 ORTHO05D009127 1.9e-20 102.1 69 69.6
Eucgr.E02360 Eucalyptus grandis HOM05D001718 ORTHO05D009127 4.3e-20 100.9 69 72.5
Lsat_1_v5_gn_4_27940 Lactuca sativa HOM05D001718 ORTHO05D009127 1.3e-19 99.4 69 73.9
Lj2A311G33 Lonicera japonica HOM05D001718 ORTHO05D009127 1.3e-19 99.4 81 64.2
THA.LOC104812839 Tarenaya hassleriana HOM05D001718 ORTHO05D009127 1.6e-19 99.0 73 64.4
AT5G46390 Arabidopsis thaliana HOM05D001718 ORTHO05D009127 2.8e-19 98.2 69 68.1
C09p28570 Brassica napus HOM05D001718 ORTHO05D009127 2.8e-19 98.2 69 68.1
BcaB07g30838 Brassica carinata HOM05D001718 ORTHO05D009127 3.6e-19 97.8 69 68.1
Carub.0008s0150 Capsella rubella HOM05D001718 ORTHO05D009127 3.6e-19 97.8 69 68.1
Thhalv10001155m.g Eutrema salsugineum HOM05D001718 ORTHO05D009127 3.6e-19 97.8 69 68.1
BcaC04g21704 Brassica carinata HOM05D001718 ORTHO05D009127 6.2e-19 97.1 69 68.1
Sp2g11240 Schrenkiella parvula HOM05D001718 ORTHO05D009127 6.2e-19 97.1 70 65.7
EL10Ac8g19783 Beta vulgaris HOM05D001718 ORTHO05D009127 1.1e-18 96.3 69 71.0
A09p22330 Brassica napus HOM05D001718 ORTHO05D009127 1.1e-18 96.3 69 66.7
AL8G12020 Arabidopsis lyrata HOM05D001718 ORTHO05D009127 1.8e-18 95.5 69 65.2
Os01g0664000 Oryza sativa ssp. japonica HOM05D001718 ORTHO05D009127 2.4e-18 95.1 69 66.7
Aa31LG9G6460 Aethionema arabicum HOM05D001718 ORTHO05D009127 4.0e-18 94.4 69 63.8
Ah.09g232920 Amaranthus hybridus HOM05D001718 ORTHO05D009127 2.0e-17 92.0 85 61.2
CARHR175380 Cardamine hirsuta HOM05D001718 ORTHO05D009127 2.0e-17 92.0 68 64.7
Mapoly0051s0032 Marchantia polymorpha HOM05D001718 ORTHO05D009127 5.8e-17 90.5 69 65.2
Zm00001eb359650 Zea mays HOM05D001718 ORTHO05D009127 5.8e-17 90.5 69 63.8
Haze_05505 Corylus avellana HOM05D001718 ORTHO05D009127 7.6e-17 90.1 110 48.2
Haze_05511 Corylus avellana HOM05D001718 ORTHO05D009127 7.6e-17 90.1 110 48.2
SEGI_21132 Sequoiadendron giganteum HOM05D001718 ORTHO05D009127 7.6e-17 90.1 69 65.2
Pp3c5_6160 Physcomitrium patens HOM05D001718 ORTHO05D009127 9.9e-17 89.7 69 62.3
BolC9t55727H Brassica oleracea HOM05D001718 ORTHO05D009127 2.9e-16 88.2 81 58.0
BraA09t37833Z Brassica rapa HOM05D001718 ORTHO05D009127 3.8e-16 87.8 80 57.5
Pp3c16_16750 Physcomitrium patens HOM05D001718 ORTHO05D009127 3.8e-16 87.8 69 59.4
unitig_578.g16324 Utricularia gibba HOM05D001718 ORTHO05D009127 1.9e-15 85.5 80 57.5
HPP92_024729 Vanilla planifolia HOM05D001718 ORTHO05D009127 6.0e-14 80.5 69 58.0
SMO119G0503 Selaginella moellendorffii HOM05D001718 ORTHO05D009127 1.8e-13 79.0 69 56.5
SMO351G0302 Selaginella moellendorffii HOM05D001718 ORTHO05D009127 3.0e-13 78.2 69 55.1
Gohir.A05G150900 Gossypium hirsutum HOM05D001718 ORTHO05D009127 8.7e-13 76.6 42 88.1
CBR_g38981 Chara braunii HOM05D001718 ORTHO05D009127 1.5e-12 75.9 73 49.3
Duzib235G0644 Durio zibethinus HOM05D000020 ORTHO05D000156 1.3e-11 72.8 40 82.5
Migut.M00953 Erythranthe guttata HOM05D001718 ORTHO05D009127 1.3e-11 72.8 41 82.9
Manes.17G065400 Manihot esculenta HOM05D001718 ORTHO05D009127 2.1e-11 72.0 42 78.6
Sabra11G0078200 Salix brachista HOM05D001718 ORTHO05D009127 1.3e-08 62.8 104 40.4
PRCOL_00004096 Prasinoderma coloniale HOM05D001718 ORTHO05D009127 3.8e-08 61.2 70 42.9
Zm00001eb381590 Zea mays HOM05D001718 ORTHO05D007949 4.2e-07 57.8 48 50.0
vmacro07869 Vaccinium macrocarpon HOM05D001718 ORTHO05D007949 1.2e-06 56.2 66 42.4
CANSAT01G0065 Cannabis sativa HOM05D001718 ORTHO05D007949 1.6e-06 55.8 50 50.0
AUR62024389 Chenopodium quinoa HOM05D001718 ORTHO05D007949 1.6e-06 55.8 46 54.3
AUR62025984 Chenopodium quinoa HOM05D001718 ORTHO05D007949 1.6e-06 55.8 46 54.3
Sc13g0001990 Simmondsia chinensis HOM05D001718 ORTHO05D007949 1.6e-06 55.8 46 52.2
EL10Ac3g07007 Beta vulgaris HOM05D001718 ORTHO05D007949 2.1e-06 55.5 46 52.2
Gohir.A01G196000 Gossypium hirsutum HOM05D001718 ORTHO05D007949 2.1e-06 55.5 66 39.4
Gohir.D01G186400 Gossypium hirsutum HOM05D001718 ORTHO05D007949 2.1e-06 55.5 66 39.4
Gorai.002G229800 Gossypium raimondii HOM05D001718 ORTHO05D007949 2.1e-06 55.5 66 39.4
Mapoly0039s0084 Marchantia polymorpha HOM05D001718 ORTHO05D007949 2.1e-06 55.5 69 37.7
Rhsim03G0012100 Rhododendron simsii HOM05D001718 ORTHO05D007949 2.1e-06 55.5 66 40.9
Os06g0318600 Oryza sativa ssp. japonica HOM05D001718 ORTHO05D007949 2.7e-06 55.1 69 37.7
Hund24747 Selenicereus undatus HOM05D001718 ORTHO05D007949 3.5e-06 54.7 46 52.2
MBI01_g27617_MAGBIO Magnolia biondii HOM05D001718 ORTHO05D007949 4.6e-06 54.3 48 47.9
Lsat_1_v5_gn_7_80620 Lactuca sativa HOM05D001718 ORTHO05D007949 6.0e-06 53.9 48 50.0
C08p33260 Brassica napus HOM05D001718 ORTHO05D007949 7.9e-06 53.5 45 51.1
BolC8t50928H Brassica oleracea HOM05D001718 ORTHO05D007949 7.9e-06 53.5 45 51.1
Lsat_1_v5_gn_8_80041 Lactuca sativa HOM05D001718 ORTHO05D007949 7.9e-06 53.5 48 47.9


User provided reference genes

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