Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024590 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 4.9e-37 157.1 72 100.0
CSS0027476 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 4.9e-37 157.1 72 100.0
CSS0001650 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 2.3e-34 148.3 72 97.2
CSS0034315 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 2.5e-33 144.8 69 98.6
Migut.I01181 Erythranthe guttata HOM05D002778 ORTHO05D003112 5.5e-20 100.5 64 64.1
CiPaw.01G088700 Carya illinoinensis HOM05D002778 ORTHO05D003112 5.7e-17 90.5 64 57.8
FAN05G2325 Fragaria x ananassa HOM05D000059 ORTHO05D000128 5.7e-17 90.5 65 64.6
MD09G1160500 Malus domestica HOM05D002778 ORTHO05D003112 1.6e-16 89.0 69 55.1
QL05p082346 Quercus lobata HOM05D002778 ORTHO05D003112 3.7e-16 87.8 68 58.8
Potri.010G251000 Populus trichocarpa HOM05D002778 ORTHO05D003112 6.3e-16 87.0 64 57.8
Ciclev10026904m.g Citrus clementina HOM05D002778 ORTHO05D003112 1.4e-15 85.9 64 57.8
RcHm_v2.0_Chr2g0149751 Rosa chinensis HOM05D002778 ORTHO05D003112 6.9e-15 83.6 65 58.5
MD17G1146300 Malus domestica HOM05D002778 ORTHO05D003112 9.0e-15 83.2 65 55.4
Cfa020956 Carpinus fangiana HOM05D002778 ORTHO05D003112 1.2e-14 82.8 63 58.7
Prupe.3G019100 Prunus persica HOM05D002778 ORTHO05D003112 2.0e-14 82.0 68 54.4
Potri.008G007932 Populus trichocarpa HOM05D002778 ORTHO05D003112 2.9e-13 78.2 64 56.2
Potri.008G007800 Populus trichocarpa HOM05D002778 ORTHO05D003112 1.1e-12 76.3 64 54.7
GSVIVG01029639001 Vitis vinifera HOM05D002778 ORTHO05D003112 3.6e-11 71.2 64 53.1
Hma1.2p1_1961F.1_g309120 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 3.3e-09 64.7 59 49.2
Hma1.2p1_2332F.1_g320100 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 3.3e-09 64.7 59 49.2
Lsat_1_v5_gn_3_19520 Lactuca sativa HOM05D002778 ORTHO05D003112 1.3e-08 62.8 59 45.8
SalBow4G0971 Salvia bowleyana HOM05D002778 ORTHO05D003112 1.7e-08 62.4 59 52.5
Cpa.g.sc23.21 Carica papaya HOM05D002778 ORTHO05D003112 2.2e-08 62.0 59 49.2
Eucgr.F04019 Eucalyptus grandis HOM05D002778 ORTHO05D003112 2.2e-08 62.0 63 46.0
MBI16_g36963_MAGBIO Magnolia biondii HOM05D002778 ORTHO05D003112 2.2e-08 62.0 59 45.8
Eucgr.C02015 Eucalyptus grandis HOM05D002778 ORTHO05D003112 2.8e-08 61.6 59 45.8
Thecc.09G007900 Theobroma cacao HOM05D002778 ORTHO05D003112 2.8e-08 61.6 59 49.2
Sed0013186 Sechium edule HOM05D002778 ORTHO05D003112 3.7e-08 61.2 64 37.5
Solyc02g081560.1 Solanum lycopersicum HOM05D002778 ORTHO05D003112 3.7e-08 61.2 59 44.1
COL.COLO4_19026 Corchorus olitorius HOM05D002778 ORTHO05D003112 4.8e-08 60.8 59 49.2
CiPaw.07G212100 Carya illinoinensis HOM05D002778 ORTHO05D003112 8.2e-08 60.1 59 49.2
Manes.15G098500 Manihot esculenta HOM05D002778 ORTHO05D003112 8.2e-08 60.1 59 47.5
PSO063G5619 Papaver somniferum HOM05D002778 ORTHO05D003112 8.2e-08 60.1 54 50.0
Eucgr.C02016 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.1e-07 59.7 59 45.8
Eucgr.J02702 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.1e-07 59.7 59 45.8
Gohir.D05G066400 Gossypium hirsutum HOM05D002778 ORTHO05D003112 1.1e-07 59.7 59 47.5
Gorai.009G067200 Gossypium raimondii HOM05D002778 ORTHO05D003112 1.1e-07 59.7 59 47.5
Duzib187G1568 Durio zibethinus HOM05D002778 ORTHO05D003112 1.4e-07 59.3 59 45.8
CAN.G809.78 Capsicum annuum HOM05D002778 ORTHO05D003112 2.4e-07 58.5 59 40.7
Gohir.A05G063800 Gossypium hirsutum HOM05D002778 ORTHO05D003112 2.4e-07 58.5 59 45.8
Medtr3g108890 Medicago truncatula HOM05D002778 ORTHO05D003112 2.4e-07 58.5 54 46.3
Nn8g40687 Nelumbo nucifera HOM05D002778 ORTHO05D003112 2.4e-07 58.5 59 42.4
PGR102G1539 Punica granatum HOM05D002778 ORTHO05D003112 2.4e-07 58.5 59 44.1
Cfa013278 Carpinus fangiana HOM05D002778 ORTHO05D003112 3.1e-07 58.2 54 50.0
Glyma.14G134900 Glycine max HOM05D002778 ORTHO05D003112 3.1e-07 58.2 59 44.1
MD15G1107300 Malus domestica HOM05D002778 ORTHO05D003112 3.1e-07 58.2 59 44.1
Manes.03G079400 Manihot esculenta HOM05D002778 ORTHO05D003112 3.1e-07 58.2 59 44.1
CSS0015542 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 4.1e-07 57.8 63 41.3
Lalb_Chr08g0243521 Lupinus albus HOM05D002778 ORTHO05D003112 4.1e-07 57.8 59 42.4
Phvul.009G234900 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 4.1e-07 57.8 64 45.3
Potri.018G007300 Populus trichocarpa HOM05D002778 ORTHO05D003112 4.1e-07 57.8 59 40.7
HanXRQChr17g0538041 Helianthus annuus HOM05D002778 ORTHO05D003112 5.3e-07 57.4 59 40.7
Manes.14G162900 Manihot esculenta HOM05D002778 ORTHO05D003112 5.3e-07 57.4 57 45.6
TPR.G12466 Trifolium pratense HOM05D002778 ORTHO05D003112 5.3e-07 57.4 54 44.4
TWI36G0848 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 5.3e-07 57.4 59 44.1
MD16G1246800 Malus domestica HOM05D002778 ORTHO05D003112 6.9e-07 57.0 64 42.2
PSO170G3710 Papaver somniferum HOM05D002778 ORTHO05D003112 6.9e-07 57.0 54 48.1
Ca_15657_v3 Cicer arietinum L. HOM05D000122 ORTHO05D000139 9.1e-07 56.6 54 42.6
Manes.06G018000 Manihot esculenta HOM05D002778 ORTHO05D003112 9.1e-07 56.6 57 45.6
Haze_21753 Corylus avellana HOM05D002778 ORTHO05D003112 1.2e-06 56.2 59 44.1
TPR.G7055 Trifolium pratense HOM05D002778 ORTHO05D003112 1.2e-06 56.2 59 44.1
Manes.09G005702 Manihot esculenta HOM05D002778 ORTHO05D003112 1.5e-06 55.8 57 43.9
Potri.006G073400 Populus trichocarpa HOM05D002778 ORTHO05D003112 1.5e-06 55.8 57 43.9
Prupe.1G459600 Prunus persica HOM05D002778 ORTHO05D003112 1.5e-06 55.8 54 46.3
Ciclev10010727m.g Citrus clementina HOM05D002778 ORTHO05D003112 2.0e-06 55.5 59 42.4
Cc01_g10000 Coffea canephora HOM05D002778 ORTHO05D003112 2.0e-06 55.5 59 44.1
Manes.06G018100 Manihot esculenta HOM05D002778 ORTHO05D003112 2.0e-06 55.5 57 45.6
PGR142G4130 Punica granatum HOM05D002778 ORTHO05D003112 2.0e-06 55.5 54 48.1
Glyma.06G077000 Glycine max HOM05D002778 ORTHO05D003112 2.6e-06 55.1 59 40.7
RcHm_v2.0_Chr4g0399141 Rosa chinensis HOM05D002778 ORTHO05D003112 2.6e-06 55.1 64 42.2
Solyc07g008430.2 Solanum lycopersicum HOM05D002778 ORTHO05D003112 2.6e-06 55.1 64 42.2
Sopen07g004330 Solanum pennellii HOM05D002778 ORTHO05D003112 2.6e-06 55.1 64 42.2
Manes.06G017900 Manihot esculenta HOM05D002778 ORTHO05D003112 3.4e-06 54.7 43 51.2
Medtr2g038220 Medicago truncatula HOM05D002778 ORTHO05D003112 3.4e-06 54.7 59 44.1
Potri.018G140500 Populus trichocarpa HOM05D002778 ORTHO05D003112 3.4e-06 54.7 57 42.1
QL12p025213 Quercus lobata HOM05D002778 ORTHO05D003112 3.4e-06 54.7 59 42.4
MELO3C011187.2 Cucumis melo HOM05D002778 ORTHO05D003112 4.5e-06 54.3 59 40.7
Glyma.17G197800 Glycine max HOM05D002778 ORTHO05D003112 4.5e-06 54.3 59 40.7
Nn8g40694 Nelumbo nucifera HOM05D002778 ORTHO05D003112 4.5e-06 54.3 59 40.7
RcHm_v2.0_Chr6g0305041 Rosa chinensis HOM05D002778 ORTHO05D003112 4.5e-06 54.3 59 45.8
PGSC0003DMG400021029 Solanum tuberosum HOM05D002778 ORTHO05D003112 4.5e-06 54.3 64 42.2
Aa31LG3G16440 Aethionema arabicum HOM05D002778 ORTHO05D003112 5.9e-06 53.9 59 45.8
CiPaw.08G020200 Carya illinoinensis HOM05D002778 ORTHO05D003112 5.9e-06 53.9 59 40.7
Lalb_Chr23g0276751 Lupinus albus HOM05D002778 ORTHO05D003112 5.9e-06 53.9 61 42.6
Oeu012391.1 Olea europaea HOM05D002778 ORTHO05D003112 5.9e-06 53.9 54 46.3
Ca_21261_v3 Cicer arietinum L. HOM05D002778 ORTHO05D003112 7.7e-06 53.5 59 40.7
DCAR_018016 Daucus carota HOM05D002778 ORTHO05D003112 7.7e-06 53.5 61 42.6
Medtr4g127190 Medicago truncatula HOM05D002778 ORTHO05D003112 7.7e-06 53.5 59 40.7


User provided reference genes

Program Settings