Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 6.8e-53 210.3 100 100.0
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 3.6e-46 188.0 100 92.0
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 8.1e-46 186.8 100 91.0
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 6.8e-45 183.7 100 90.0
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 8.9e-45 183.3 100 90.0
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 8.9e-45 183.3 100 88.0
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.2e-44 183.0 100 88.0
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 2.0e-44 182.2 100 89.0
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 2.0e-44 182.2 100 89.0
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 2.6e-44 181.8 100 88.0
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 2.6e-44 181.8 100 88.0
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 4.4e-44 181.0 100 87.0
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 4.4e-44 181.0 100 88.0
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 4.4e-44 181.0 100 88.0
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 5.8e-44 180.6 100 88.0
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 5.8e-44 180.6 100 88.0
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 5.8e-44 180.6 100 88.0
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 7.5e-44 180.3 100 88.0
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 9.9e-44 179.9 100 87.0
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 9.9e-44 179.9 100 87.0
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 9.9e-44 179.9 100 87.0
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.9e-44 179.9 100 87.0
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.9e-44 179.9 100 87.0
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.9e-44 179.9 100 87.0
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.9e-44 179.9 100 87.0
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 9.9e-44 179.9 100 87.0
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 9.9e-44 179.9 100 87.0
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 9.9e-44 179.9 100 87.0
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 1.3e-43 179.5 100 87.0
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.3e-43 179.5 100 88.0
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.3e-43 179.5 100 88.0
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 1.7e-43 179.1 100 86.0
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 2.2e-43 178.7 100 87.0
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 2.2e-43 178.7 100 86.0
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.2e-43 178.7 100 85.0
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 2.9e-43 178.3 100 86.0
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.9e-43 178.3 100 86.0
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.9e-43 178.3 100 86.0
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 2.9e-43 178.3 100 86.0
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.9e-43 178.3 100 87.0
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.9e-43 178.3 100 87.0
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 3.7e-43 177.9 100 87.0
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 3.7e-43 177.9 98 86.7
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 3.7e-43 177.9 100 87.0
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 3.7e-43 177.9 100 87.0
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 3.7e-43 177.9 100 86.0
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.9e-43 177.6 100 85.0
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 6.4e-43 177.2 98 87.8
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 6.4e-43 177.2 98 87.8
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 6.4e-43 177.2 100 86.0
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 6.4e-43 177.2 100 86.0
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 6.4e-43 177.2 100 86.0
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 6.4e-43 177.2 100 85.0
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 6.4e-43 177.2 100 85.0
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 8.3e-43 176.8 100 87.0
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 8.3e-43 176.8 100 86.0
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 8.3e-43 176.8 100 86.0
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 8.3e-43 176.8 100 85.0
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 1.1e-42 176.4 100 85.0
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 1.1e-42 176.4 100 84.0
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 1.1e-42 176.4 100 85.0
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 1.1e-42 176.4 100 85.0
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 1.4e-42 176.0 100 85.0
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 1.4e-42 176.0 100 85.0
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.4e-42 176.0 100 85.0
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.4e-42 176.0 100 85.0
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 1.4e-42 176.0 100 85.0
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 1.4e-42 176.0 100 85.0
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 1.4e-42 176.0 100 84.0
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.4e-42 176.0 100 85.0
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 1.9e-42 175.6 99 83.8
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 1.9e-42 175.6 100 85.0
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.9e-42 175.6 100 85.0
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.9e-42 175.6 100 85.0
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 1.9e-42 175.6 100 84.0
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.4e-42 175.3 100 86.0
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 3.2e-42 174.9 100 84.0
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.4e-42 174.1 100 84.0
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 7.1e-42 173.7 100 83.0
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 7.1e-42 173.7 100 83.0
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 7.1e-42 173.7 100 84.0
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 7.1e-42 173.7 98 84.7
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 7.1e-42 173.7 98 84.7
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 7.1e-42 173.7 98 84.7
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 7.1e-42 173.7 100 83.0
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 9.2e-42 173.3 100 83.0
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 9.2e-42 173.3 100 84.0
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 9.2e-42 173.3 100 84.0
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 9.2e-42 173.3 100 85.0
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 1.2e-41 172.9 100 84.0
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 1.2e-41 172.9 100 83.0
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 1.2e-41 172.9 100 83.0
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.1e-41 172.2 100 82.0
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 2.7e-41 171.8 100 84.0
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 6.0e-41 170.6 100 82.0
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 6.0e-41 170.6 100 81.0
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 6.0e-41 170.6 100 80.0
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 6.0e-41 170.6 100 80.0
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 1.7e-40 169.1 100 80.0
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 2.3e-40 168.7 98 83.7
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 2.3e-40 168.7 98 84.7
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 2.3e-40 168.7 98 84.7
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 2.3e-40 168.7 100 79.0
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 2.3e-40 168.7 98 84.7
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.3e-40 168.7 100 83.0
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 3.0e-40 168.3 98 83.7
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 3.0e-40 168.3 100 81.0
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 3.0e-40 168.3 100 81.0
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 3.9e-40 167.9 100 81.0
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 6.6e-40 167.2 98 83.7
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 6.6e-40 167.2 98 83.7
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 6.6e-40 167.2 98 83.7
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 1.1e-39 166.4 98 83.7
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 1.5e-39 166.0 98 83.7
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 1.5e-39 166.0 98 83.7
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 1.5e-39 166.0 98 83.7
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 1.5e-39 166.0 98 83.7
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 1.5e-39 166.0 98 83.7
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 1.5e-39 166.0 98 83.7
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 1.5e-39 166.0 98 83.7
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 1.5e-39 166.0 98 83.7
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 1.5e-39 166.0 98 83.7
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 3.3e-39 164.9 98 79.6
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 3.3e-39 164.9 100 81.0
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 5.6e-39 164.1 100 80.0
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 1.2e-38 162.9 98 78.6
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 1.6e-38 162.5 100 78.0
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 2.1e-38 162.2 145 61.4
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 1.4e-37 159.5 100 78.0
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.0e-37 157.9 132 63.6
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 5.2e-37 157.5 98 78.6
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 6.8e-37 157.1 78 93.6
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.2e-36 156.4 91 81.3
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 2.6e-36 155.2 100 75.0
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 3.4e-36 154.8 100 74.0
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 9.9e-36 153.3 100 71.0
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 1.1e-34 149.8 100 76.0
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 1.1e-34 149.8 78 89.7
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 1.9e-34 149.1 100 69.0
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 1.2e-33 146.4 78 88.5
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 3.6e-30 134.8 73 84.9
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 4.4e-28 127.9 97 69.1
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.1e-25 119.0 110 57.3
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 1.3e-22 109.8 85 67.1
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 1.3e-22 109.8 85 67.1
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 5.3e-21 104.4 85 63.5
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 5.3e-21 104.4 98 60.2
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 7.6e-20 100.5 61 80.3
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 2.2e-19 99.0 59 81.4
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 3.8e-19 98.2 56 85.7
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 3.8e-19 98.2 56 85.7
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 3.8e-19 98.2 56 85.7
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 3.8e-19 98.2 56 85.7
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 8.4e-19 97.1 56 83.9
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 1.9e-18 95.9 56 83.9
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 1.9e-18 95.9 67 73.1
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.4e-18 95.5 100 55.0
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 3.2e-18 95.1 56 82.1
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 4.2e-18 94.7 56 80.4
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 1.2e-17 93.2 56 80.4
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 2.5e-15 85.5 47 87.2
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 3.3e-15 85.1 44 88.6
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 1.6e-14 82.8 100 47.0
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 2.1e-14 82.4 44 81.8


User provided reference genes

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