Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 1.2e-130 469.9 249 100.0
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 1.7e-124 449.5 248 96.4
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 4.1e-99 365.2 249 79.5
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 5.8e-93 344.7 259 75.7
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 3.2e-83 312.4 303 63.7
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 2.5e-80 302.8 238 71.4
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 5.6e-80 301.6 248 70.2
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 7.3e-80 301.2 247 70.0
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 1.8e-78 296.6 248 68.5
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 3.1e-78 295.8 253 68.8
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 5.2e-78 295.0 247 67.2
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 8.4e-76 287.7 249 66.3
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 7.1e-75 284.6 248 66.5
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.2e-74 283.9 248 66.5
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 3.5e-74 282.3 248 65.7
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 1.7e-73 280.0 238 66.0
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 2.3e-73 279.6 247 67.6
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 3.0e-73 279.3 238 66.0
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 5.1e-73 278.5 238 66.0
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 8.7e-73 277.7 229 68.1
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 1.5e-72 276.9 246 63.8
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 4.3e-72 275.4 247 66.8
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 9.6e-72 274.2 247 64.0
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 1.6e-71 273.5 251 64.1
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 4.7e-71 271.9 248 64.1
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 8.1e-71 271.2 232 66.8
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 2.4e-70 269.6 248 64.9
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.2e-69 267.3 185 75.7
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 1.2e-69 267.3 249 65.9
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 1.5e-69 266.9 249 65.1
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 2.0e-69 266.5 249 62.2
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 3.4e-69 265.8 246 63.8
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 1.3e-68 263.8 200 71.5
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 2.9e-68 262.7 265 60.8
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 4.9e-68 261.9 250 64.4
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 1.4e-67 260.4 222 65.3
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 1.9e-67 260.0 248 61.3
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 3.2e-67 259.2 248 59.3
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 3.2e-67 259.2 248 63.3
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 3.2e-67 259.2 222 65.8
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 4.2e-67 258.8 248 63.3
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 4.2e-67 258.8 250 61.2
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 4.6e-66 255.4 247 62.3
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 6.0e-66 255.0 245 61.2
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 1.0e-65 254.2 248 59.7
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 1.7e-65 253.4 247 59.9
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 2.3e-65 253.1 247 59.9
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 3.9e-65 252.3 228 64.0
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 5.1e-65 251.9 248 59.7
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 5.1e-65 251.9 248 59.7
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 5.1e-65 251.9 248 59.7
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 6.6e-65 251.5 237 60.8
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 1.5e-64 250.4 246 60.2
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 2.5e-64 249.6 253 60.5
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 3.3e-64 249.2 247 60.3
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 3.3e-64 249.2 247 59.9
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 3.3e-64 249.2 247 60.7
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 7.3e-64 248.1 244 60.2
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 1.6e-63 246.9 245 60.0
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 2.1e-63 246.5 248 59.7
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 2.1e-63 246.5 248 58.1
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 2.8e-63 246.1 254 58.7
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 2.8e-63 246.1 238 60.9
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 3.6e-63 245.7 248 56.5
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 1.1e-62 244.2 231 60.6
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 1.4e-62 243.8 245 59.2
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 1.4e-62 243.8 251 59.8
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.2e-61 240.7 261 57.1
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 5.8e-61 238.4 239 58.6
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.8e-60 235.7 261 57.1
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 6.4e-60 235.0 251 57.0
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 1.4e-59 233.8 246 55.7
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 1.9e-59 233.4 243 58.4
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 2.4e-59 233.0 196 65.3
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.2e-59 232.6 261 57.5
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 4.2e-59 232.3 196 64.8
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 7.1e-59 231.5 250 57.2
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 1.0e-57 227.6 245 55.9
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 3.9e-57 225.7 248 58.9
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 6.7e-57 224.9 242 59.1
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 8.7e-57 224.6 162 71.0
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 3.3e-56 222.6 145 80.7
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 2.1e-55 219.9 248 56.9
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 8.1e-55 218.0 230 57.0
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 5.3e-54 215.3 259 52.9
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 6.4e-52 208.4 201 62.7
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 1.1e-51 207.6 252 57.9
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 1.4e-51 207.2 200 57.5
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 2.1e-50 203.4 247 55.9
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 6.0e-50 201.8 248 49.6
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 3.9e-49 199.1 157 68.8
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 4.0e-46 189.1 163 60.7
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 1.3e-44 184.1 256 48.8
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 2.5e-43 179.9 164 64.6
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 4.2e-43 179.1 214 50.5
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 3.9e-41 172.6 131 68.7
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 3.2e-35 152.9 152 59.9
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 5.5e-35 152.1 144 56.9
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 1.8e-33 147.1 162 57.4
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 5.1e-33 145.6 126 59.5
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 9.7e-32 141.4 240 37.9
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 1.7e-31 140.6 188 45.2
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 3.8e-28 129.4 121 61.2
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 3.6e-26 122.9 193 37.8
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 2.3e-25 120.2 97 66.0
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 3.9e-25 119.4 268 39.2
FAN05G5022 Fragaria x ananassa HOM05D000780 ORTHO05D009033 3.3e-24 116.3 121 62.0
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 4.8e-23 112.5 259 34.7
PGSC0003DMG401028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 3.9e-17 92.8 110 58.2
CAN.G4.37 Capsicum annuum HOM05D000780 ORTHO05D009033 8.8e-17 91.7 69 75.4
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 9.7e-16 88.2 67 68.7
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 9.1e-14 81.6 125 47.2
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 1.0e-09 68.2 53 62.3
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.4e-09 67.8 53 64.2
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 2.0e-08 63.9 52 65.4
FAN18G1636 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.8e-07 60.1 60 58.3


User provided reference genes

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