Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 0.0e+00 1239.2 646 100.0
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 1.3e-301 1039.3 649 78.1
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 1.8e-292 1008.8 554 85.6
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 3.1e-292 1008.1 638 78.4
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 3.1e-292 1008.1 669 77.7
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 2.6e-286 988.4 643 79.2
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 6.3e-285 983.8 647 74.2
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 2.5e-281 971.8 649 78.1
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 4.7e-280 967.6 650 73.8
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 4.1e-276 954.5 655 75.7
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 7.0e-276 953.7 655 75.7
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 9.2e-276 953.4 650 73.5
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 9.2e-276 953.4 648 72.1
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.2e-275 953.0 655 75.1
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 2.3e-274 948.7 659 73.3
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.9e-274 948.0 647 72.8
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.1e-273 946.4 659 72.8
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 4.3e-273 944.5 647 72.8
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.5e-273 943.3 647 72.6
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 4.0e-271 937.9 525 84.6
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 6.4e-269 930.6 658 71.9
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 8.3e-269 930.2 555 80.2
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.1e-267 925.6 660 70.3
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 4.6e-267 924.5 660 70.2
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 6.0e-267 924.1 668 70.4
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 7.8e-267 923.7 652 72.1
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.3e-266 922.9 557 78.1
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 3.9e-266 921.4 645 76.3
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 6.6e-266 920.6 552 78.3
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.3e-265 918.3 651 69.9
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 4.3e-265 917.9 664 70.0
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.3e-265 917.9 663 69.8
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 5.6e-265 917.5 654 70.5
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 5.6e-265 917.5 662 74.3
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.6e-264 916.0 556 78.4
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.1e-264 915.6 651 70.2
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 2.1e-264 915.6 651 70.2
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 2.1e-264 915.6 654 73.2
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 6.2e-264 914.1 662 69.0
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 6.2e-264 914.1 662 69.0
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 6.2e-264 914.1 650 69.4
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 8.1e-264 913.7 651 70.2
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 8.1e-264 913.7 653 69.1
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 1.4e-263 912.9 664 69.6
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.4e-263 912.9 664 69.6
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 3.1e-263 911.8 663 70.6
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 8.9e-263 910.2 665 69.2
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.2e-262 909.8 548 79.0
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.4e-262 908.3 663 69.2
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.7e-261 904.8 554 78.0
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-260 903.3 655 69.3
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.9e-260 902.5 551 77.3
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 2.4e-260 902.1 561 76.3
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 4.1e-260 901.4 554 78.3
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.6e-259 899.4 552 78.8
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 2.7e-259 898.7 568 76.2
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 5.1e-258 894.4 665 67.8
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 3.6e-256 888.3 557 75.6
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 6.2e-256 887.5 662 69.6
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.1e-255 886.7 669 71.3
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 3.4e-254 881.7 664 68.5
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.7e-253 879.4 556 76.8
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.7e-253 879.4 556 76.8
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 4.9e-253 877.9 669 71.4
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 6.4e-253 877.5 664 67.2
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 8.4e-253 877.1 557 76.5
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 8.4e-253 877.1 535 78.5
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 9.3e-252 873.6 656 68.1
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 4.3e-249 864.8 665 66.9
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.3e-245 853.2 560 74.3
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 2.2e-245 852.4 546 75.5
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 6.4e-245 850.9 568 75.2
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 2.4e-244 849.0 665 64.8
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 7.1e-244 847.4 561 75.9
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 1.2e-243 846.7 609 69.6
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 2.1e-243 845.9 567 72.3
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 2.1e-243 845.9 546 75.1
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 2.7e-243 845.5 546 75.3
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 2.7e-243 845.5 546 75.3
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 2.5e-241 839.0 551 73.0
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 9.6e-241 837.0 540 74.4
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 3.6e-240 835.1 667 65.2
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 3.6e-240 835.1 668 63.5
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 4.8e-240 834.7 574 73.5
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 6.2e-240 834.3 550 74.4
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 8.1e-240 833.9 669 65.0
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 9.0e-239 830.5 556 73.4
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 2.6e-238 828.9 548 73.7
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 6.4e-237 824.3 665 68.0
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 1.4e-236 823.2 577 72.4
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 2.4e-236 822.4 665 64.5
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 4.2e-236 821.6 664 64.5
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 1.2e-235 820.1 551 71.5
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 2.7e-235 818.9 548 73.0
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 2.7e-235 818.9 660 64.7
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 2.7e-235 818.9 660 64.7
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 2.7e-235 818.9 660 64.7
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 6.9e-231 804.3 528 73.9
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 2.6e-230 802.4 671 61.5
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.2e-229 799.3 629 70.4
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 2.2e-229 799.3 608 70.9
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 1.4e-228 796.6 555 70.3
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.0e-226 790.4 550 69.1
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.4e-223 780.0 565 67.8
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 5.3e-223 778.1 661 65.7
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.2e-221 772.7 659 60.2
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 6.5e-221 771.2 652 65.3
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.1e-217 760.4 527 72.1
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.5e-217 760.0 654 61.5
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 5.7e-217 758.1 654 61.3
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 5.7e-217 758.1 654 61.3
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 5.7e-217 758.1 562 66.5
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 8.2e-216 754.2 659 60.8
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.5e-209 733.4 657 60.1
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 7.4e-209 731.1 558 65.6
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 3.7e-208 728.8 660 60.0
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 3.8e-205 718.8 656 59.1
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 7.2e-196 688.0 576 61.6
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 2.3e-194 682.9 569 62.7
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 7.5e-185 651.4 652 56.7
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.1e-183 647.5 664 52.9
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 3.8e-181 639.0 426 73.5
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.6e-174 617.1 586 55.8
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 6.1e-171 605.1 452 67.3
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 2.7e-166 589.7 509 68.6
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 1.7e-157 560.5 547 55.0
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 6.2e-155 552.0 562 52.7
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 1.7e-152 543.9 422 67.3
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 8.4e-144 515.0 336 72.0
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 4.4e-129 466.1 382 58.4
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.7e-128 464.2 384 59.4
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.2e-118 431.4 285 71.9
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 3.8e-88 330.1 350 53.1
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.7e-83 314.7 554 35.9
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 2.6e-76 290.8 557 35.2
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 3.2e-71 273.9 400 43.0
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 2.1e-62 244.6 216 58.8
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 1.3e-48 198.7 163 60.7
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 1.6e-41 175.3 144 58.3
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 7.1e-34 149.8 294 33.0
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 9.5e-31 139.4 93 72.0
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 8.4e-27 126.3 77 79.2
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 8.6e-24 116.3 101 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 4.0e-21 107.5 159 37.1
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 6.9e-21 106.7 203 38.4
SMO334G0060 Selaginella moellendorffii HOM05D004961 ORTHO05D377666 7.8e-17 93.2 170 32.9
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 6.6e-16 90.1 63 66.7
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 2.9e-11 74.7 38 86.8
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 4.2e-10 70.9 58 65.5
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 9.3e-10 69.7 149 34.9
Actinidia31413 Actinidia chinensis HOM05D004961 ORTHO05D006258 3.9e-08 64.3 36 77.8
Nn1g03557 Nelumbo nucifera HOM05D004961 ORTHO05D278662 4.8e-06 57.4 143 37.1


User provided reference genes

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