Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024550 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 4.1e-262 907.9 593 100.0
Rhsim08G0035000 Rhododendron simsii HOM05D007242 ORTHO05D009089 3.3e-179 632.5 594 77.9
Hma1.2p1_0939F.1_g239400 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 2.2e-159 566.6 595 71.9
Hma1.2p1_0268F.1_g107710 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 2.1e-157 560.1 593 71.7
Lj2A917T62 Lonicera japonica HOM05D007242 ORTHO05D009089 1.1e-155 554.3 607 60.8
GSVIVG01019029001 Vitis vinifera HOM05D007242 ORTHO05D009089 8.2e-154 548.1 582 64.3
Lj2C896T5 Lonicera japonica HOM05D007242 ORTHO05D009089 1.2e-141 507.7 552 62.5
Atru.chr3.510 Acer truncatum HOM05D007242 ORTHO05D009089 2.4e-137 493.4 595 55.5
TAR381G0682 Trochodendron aralioides HOM05D007242 ORTHO05D009089 7.0e-137 491.9 594 66.2
Haze_18840 Corylus avellana HOM05D007242 ORTHO05D009089 9.1e-137 491.5 586 67.7
vmacro23494 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 9.1e-137 491.5 562 71.7
Prupe.7G148400 Prunus persica HOM05D007242 ORTHO05D009089 4.8e-130 469.2 591 65.1
CiPaw.15G142800 Carya illinoinensis HOM05D007242 ORTHO05D009089 1.4e-129 467.6 592 65.7
CANSAT35G0651 Cannabis sativa HOM05D007242 ORTHO05D009089 1.8e-129 467.2 563 67.3
MD15G1269300 Malus domestica HOM05D007242 ORTHO05D009089 1.0e-127 461.5 565 65.7
DCAR_026265 Daucus carota HOM05D007242 ORTHO05D009089 9.4e-126 454.9 588 63.9
Manes.13G136000 Manihot esculenta HOM05D007242 ORTHO05D009089 2.7e-125 453.4 558 65.8
Potri.005G127500 Populus trichocarpa HOM05D007242 ORTHO05D009089 2.3e-124 450.3 536 67.2
Dinv26797 Davidia involucrata HOM05D007242 ORTHO05D009089 2.0e-123 447.2 475 77.7
Duzib264G0124 Durio zibethinus HOM05D007242 ORTHO05D009089 2.0e-123 447.2 561 65.8
Thecc.01G042000 Theobroma cacao HOM05D007242 ORTHO05D009089 2.6e-123 446.8 564 64.9
Ciclev10027297m.g Citrus clementina HOM05D007242 ORTHO05D009089 3.3e-123 446.4 522 64.0
Oeu038867.1 Olea europaea HOM05D007242 ORTHO05D009089 3.3e-123 446.4 517 69.2
QL12p024714 Quercus lobata HOM05D007242 ORTHO05D009089 3.7e-122 443.0 516 70.7
Aqoxy6G01016 Aquilegia oxysepala HOM05D007242 ORTHO05D009089 5.3e-121 439.1 570 64.0
Gorai.007G051500 Gossypium raimondii HOM05D007242 ORTHO05D009089 2.7e-120 436.8 570 63.2
Gohir.A11G044400 Gossypium hirsutum HOM05D007242 ORTHO05D009089 1.0e-119 434.9 571 63.2
CAN.G1204.3 Capsicum annuum HOM05D007242 ORTHO05D009089 1.2e-117 427.9 602 52.8
Peaxi162Scf00075g00618 Petunia axillaris HOM05D007242 ORTHO05D009089 1.2e-117 427.9 561 63.8
MSTRG.2935 Avicennia marina HOM05D007242 ORTHO05D009089 2.1e-117 427.2 586 63.1
Cc07_g05120 Coffea canephora HOM05D007242 ORTHO05D009089 2.7e-117 426.8 589 62.5
Sabra05G0104300 Salix brachista HOM05D007242 ORTHO05D009089 6.1e-117 425.6 585 50.6
HanXRQChr14g0431951 Helianthus annuus HOM05D007242 ORTHO05D009089 1.0e-116 424.9 594 61.1
Nn1g05103 Nelumbo nucifera HOM05D007242 ORTHO05D009089 1.4e-116 424.5 592 62.3
Sopen01g004000 Solanum pennellii HOM05D007242 ORTHO05D009089 4.0e-116 422.9 590 61.0
TWI53G0783 Tripterygium wilfordii HOM05D007242 ORTHO05D009089 6.8e-116 422.2 554 65.9
Nitab4.5_0010783g0030 Nicotiana tabacum HOM05D007242 ORTHO05D009089 2.0e-115 420.6 592 61.3
ClCG02G013250 Citrullus lanatus HOM05D007242 ORTHO05D009089 1.3e-114 417.9 570 62.1
Lalb_Chr05g0221691 Lupinus albus HOM05D007242 ORTHO05D009089 1.8e-113 414.1 564 62.9
Psat4g001600 Pisum sativum HOM05D007242 ORTHO05D009089 1.8e-113 414.1 566 61.0
Solyc01g008480.4 Solanum lycopersicum HOM05D007242 ORTHO05D009089 3.1e-113 413.3 590 59.7
TPR.G15492 Trifolium pratense HOM05D007242 ORTHO05D009089 4.1e-113 412.9 566 60.8
Migut.H00525 Erythranthe guttata HOM05D007242 ORTHO05D009089 5.9e-112 409.1 591 61.6
Lsat_1_v5_gn_2_38041 Lactuca sativa HOM05D007242 ORTHO05D009089 7.7e-112 408.7 595 61.3
Medtr8g107230 Medicago truncatula HOM05D007242 ORTHO05D009089 1.0e-111 408.3 520 57.3
Phvul.002G329700 Phaseolus vulgaris HOM05D007242 ORTHO05D009089 1.0e-111 408.3 540 63.9
VMungo0251G2211 Vigna mungo HOM05D007242 ORTHO05D009089 1.0e-111 408.3 569 61.5
Glyma.05G246000 Glycine max HOM05D007242 ORTHO05D009089 1.1e-110 404.8 541 61.4
arahy.Tifrunner.gnm1.ann1.YZC3AP Arachis hypogaea HOM05D007242 ORTHO05D009089 1.9e-110 404.1 558 54.5
arahy.Tifrunner.gnm1.ann1.79NCEV Arachis hypogaea HOM05D007242 ORTHO05D009089 1.6e-109 401.0 558 55.7
MELO3C020940.2 Cucumis melo HOM05D007242 ORTHO05D009089 2.8e-109 400.2 559 60.5
CsaV3_2G017430 Cucumis sativus L. HOM05D007242 ORTHO05D009089 1.8e-108 397.5 566 60.4
THA.LOC104819810 Tarenaya hassleriana HOM05D007242 ORTHO05D009089 1.2e-107 394.8 560 61.4
SGA_v2.0_scaffold204G41644 Striga asiatica HOM05D007242 ORTHO05D009089 3.4e-107 393.3 539 64.0
AT2G01390 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 3.7e-106 389.8 563 60.4
Hund14133 Selenicereus undatus HOM05D007242 ORTHO05D009089 4.9e-106 389.4 551 61.2
MBI16_g13145_MAGBIO Magnolia biondii HOM05D007242 ORTHO05D009089 8.3e-106 388.7 512 65.0
AL5G10350 Arabidopsis lyrata HOM05D007242 ORTHO05D009089 1.8e-105 387.5 568 59.3
Thhalv10000833m.g Eutrema salsugineum HOM05D007242 ORTHO05D009089 4.1e-105 386.3 560 58.8
Aa31LG2G8550 Aethionema arabicum HOM05D007242 ORTHO05D009089 1.6e-104 384.4 563 58.1
Sp2g12820 Schrenkiella parvula HOM05D007242 ORTHO05D009089 4.5e-104 382.9 559 58.3
Sed0022143 Sechium edule HOM05D007242 ORTHO05D009089 4.5e-104 382.9 566 59.5
BolC7t43717H Brassica oleracea HOM05D007242 ORTHO05D009089 7.8e-104 382.1 561 58.8
Carub.0005s0035 Capsella rubella HOM05D007242 ORTHO05D009089 1.7e-103 380.9 575 56.7
C07p31760 Brassica napus HOM05D007242 ORTHO05D009089 8.6e-103 378.6 555 58.9
BcaC06g34194 Brassica carinata HOM05D007242 ORTHO05D009089 1.1e-102 378.3 555 58.6
SalBow1G2223 Salvia bowleyana HOM05D007242 ORTHO05D009089 1.1e-102 378.3 503 65.6
Eucgr.B03084 Eucalyptus grandis HOM05D007242 ORTHO05D009089 3.3e-102 376.7 521 63.9
EL10Ac6g14891 Beta vulgaris HOM05D007242 ORTHO05D009089 7.3e-102 375.6 589 58.2
BraA06t27320Z Brassica rapa HOM05D007242 ORTHO05D009089 1.2e-101 374.8 564 57.6
A06p44470 Brassica napus HOM05D007242 ORTHO05D009089 4.7e-101 372.9 567 57.7
BcaC06g31314 Brassica carinata HOM05D007242 ORTHO05D009089 1.4e-100 371.3 559 58.1
Peaxi162Scf00075g00617 Petunia axillaris HOM05D007242 ORTHO05D009089 2.9e-98 363.6 549 61.0
PGR102G1679 Punica granatum HOM05D007242 ORTHO05D009089 8.3e-98 362.1 580 58.4
AUR62008019 Chenopodium quinoa HOM05D007242 ORTHO05D009089 2.7e-96 357.1 588 57.5
ATR0767G228 Amborella trichopoda HOM05D007242 ORTHO05D009089 1.3e-90 338.2 562 58.9
HanXRQChr07g0193491 Helianthus annuus HOM05D007242 ORTHO05D009089 9.2e-89 332.0 483 56.1
CARHR143900 Cardamine hirsuta HOM05D007242 ORTHO05D009089 4.2e-73 280.0 303 47.9
Nitab4.5_0008184g0020 Nicotiana tabacum HOM05D007242 ORTHO05D009089 2.7e-72 277.3 281 49.8
ECA246G4655 Erigeron canadensis HOM05D007242 ORTHO05D009089 7.8e-72 275.8 278 52.9
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 1.3e-66 258.5 260 50.8
A06p37220 Brassica napus HOM05D007242 ORTHO05D009089 6.0e-64 249.6 289 46.0
Gohir.D11G047900 Gossypium hirsutum HOM05D007242 ORTHO05D009089 1.3e-63 248.4 419 64.2
Os10g0358700 Oryza sativa ssp. japonica HOM05D007242 ORTHO05D009089 4.3e-62 243.4 518 43.6
BraA06t26646Z Brassica rapa HOM05D007242 ORTHO05D009089 3.6e-61 240.4 279 45.9
vmacro22084 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 2.4e-60 237.7 290 49.0
Zm00001eb288630 Zea mays HOM05D007242 ORTHO05D009089 1.3e-58 231.9 518 42.9
MD02G1154900 Malus domestica HOM05D007242 ORTHO05D009089 1.7e-58 231.5 396 38.4
Glyma.08G053933 Glycine max HOM05D007242 ORTHO05D009089 9.3e-57 225.7 237 48.9
AUR62003202 Chenopodium quinoa HOM05D007242 ORTHO05D009089 4.8e-45 186.8 241 41.5
CDE07G1297 Ceratophyllum demersum HOM05D007242 ORTHO05D009089 2.1e-40 171.4 348 66.1
HPP92_006079 Vanilla planifolia HOM05D007242 ORTHO05D009089 3.0e-39 167.5 189 45.0
COL.COLO4_22144 Corchorus olitorius HOM05D007242 ORTHO05D009089 3.9e-39 167.2 106 69.8
CSS0006147 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 8.7e-39 166.0 98 87.8
CARHR143890 Cardamine hirsuta HOM05D007242 ORTHO05D009089 4.1e-36 157.1 139 56.8
AT2G01360 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 1.1e-33 149.1 167 43.7
Glyma.08G053867 Glycine max HOM05D007242 ORTHO05D009089 9.7e-30 136.0 111 58.6
HanXRQChr14g0431911 Helianthus annuus HOM05D007242 ORTHO05D009089 2.2e-21 108.2 161 45.3
Lj4C132T2 Lonicera japonica HOM05D007242 ORTHO05D009089 4.8e-21 107.1 94 54.3
BcaC06g34182 Brassica carinata HOM05D007242 ORTHO05D009089 2.4e-20 104.8 107 44.9
EL10Ac4g08697 Beta vulgaris HOM05D007242 ORTHO05D009089 5.9e-19 100.1 138 39.1
BcaB08g34298 Brassica carinata HOM05D007242 ORTHO05D009089 1.5e-17 95.5 111 48.6
Atru.chr3.508 Acer truncatum HOM05D007242 ORTHO05D009089 2.0e-14 85.1 63 66.7
BcaC06g34191 Brassica carinata HOM05D007242 ORTHO05D009089 3.3e-14 84.3 117 35.0
PSO832G1391 Papaver somniferum HOM05D004079 ORTHO05D005437 1.7e-10 72.0 95 41.1
PSO591G0491 Papaver somniferum HOM05D004079 ORTHO05D005437 3.8e-10 70.9 95 40.0
DCAR_005313 Daucus carota HOM05D004079 ORTHO05D005437 1.1e-09 69.3 93 39.8
PSO782G0394 Papaver somniferum HOM05D004079 ORTHO05D005437 1.5e-09 68.9 95 37.9
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 1.9e-09 68.6 91 39.6
Duzib205G1164 Durio zibethinus HOM05D004079 ORTHO05D005437 3.2e-09 67.8 89 40.4
Glyma.05G030900 Glycine max HOM05D004079 ORTHO05D005437 1.2e-08 65.9 149 30.9
Ciclev10018829m.g Citrus clementina HOM05D004079 ORTHO05D005437 2.1e-08 65.1 91 37.4
Atru.chr9.2336 Acer truncatum HOM05D004079 ORTHO05D005437 2.7e-08 64.7 118 33.9
SGA_v2.0_scaffold56G20067 Striga asiatica HOM05D004079 ORTHO05D005437 3.6e-08 64.3 89 39.3
PGR044G0186 Punica granatum HOM05D004079 ORTHO05D005437 1.0e-07 62.8 89 37.1
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 1.4e-07 62.4 89 38.2
Zm00001eb348820 Zea mays HOM05D007242 ORTHO05D009089 1.4e-07 62.4 95 37.9
A07p40430 Brassica napus HOM05D004079 ORTHO05D005437 1.8e-07 62.0 92 35.9
BraA07t31585Z Brassica rapa HOM05D004079 ORTHO05D005437 1.8e-07 62.0 92 35.9
TPR.G11874 Trifolium pratense HOM05D004079 ORTHO05D005437 2.3e-07 61.6 92 38.0
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.0e-07 61.2 96 31.2
ATR0006G044 Amborella trichopoda HOM05D004079 ORTHO05D009709 4.0e-07 60.8 88 35.2
Nn6g34838 Nelumbo nucifera HOM05D000001 ORTHO05D000003 4.0e-07 60.8 165 24.2
BolC6t39914H Brassica oleracea HOM05D004079 ORTHO05D005437 5.2e-07 60.5 92 34.8
SMO166G0061 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 5.2e-07 60.5 158 25.3
HPP92_006080 Vanilla planifolia HOM05D007242 ORTHO05D009089 5.2e-07 60.5 86 43.0
BcaC08g46901 Brassica carinata HOM05D004079 ORTHO05D005437 8.8e-07 59.7 92 34.8
BcaC08g46918 Brassica carinata HOM05D004079 ORTHO05D005437 8.8e-07 59.7 92 34.8
AagrBONN_evm.TU.Sc2ySwM_344.143 Anthoceros agrestis HOM05D004079 ORTHO05D008936 1.2e-06 59.3 98 31.6
Nn6g34845 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.2e-06 59.3 165 24.2
A06p15120 Brassica napus HOM05D004079 ORTHO05D005437 1.5e-06 58.9 89 34.8
BraA06t24627Z Brassica rapa HOM05D004079 ORTHO05D005437 1.5e-06 58.9 89 34.8
Lj1g0021535 Lotus japonicus HOM05D004079 ORTHO05D005437 1.5e-06 58.9 142 30.3
BcaC05g25795 Brassica carinata HOM05D004079 ORTHO05D005437 2.0e-06 58.5 89 34.8
C05p17340 Brassica napus HOM05D004079 ORTHO05D005437 2.0e-06 58.5 89 34.8
C06p48780 Brassica napus HOM05D004079 ORTHO05D005437 2.0e-06 58.5 92 33.7
BolC5t30434H Brassica oleracea HOM05D004079 ORTHO05D005437 2.0e-06 58.5 89 34.8
Peaxi162Scf01023g00416 Petunia axillaris HOM05D000001 ORTHO05D000003 2.0e-06 58.5 144 28.5
AagrBONN_evm.TU.Sc2ySwM_228.2469 Anthoceros agrestis HOM05D004079 ORTHO05D005437 2.6e-06 58.2 71 39.4
Haze_20109 Corylus avellana HOM05D006596 ORTHO05D008497 2.6e-06 58.2 77 41.6
Solyc11g017290.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 2.6e-06 58.2 130 32.3
AagrBONN_evm.TU.Sc2ySwM_117.3400 Anthoceros agrestis HOM05D004079 ORTHO05D005437 3.4e-06 57.8 112 31.2
Aqoxy3G03237 Aquilegia oxysepala HOM05D004079 ORTHO05D005437 3.4e-06 57.8 114 28.9
Peaxi162Scf00310g00084 Petunia axillaris HOM05D000001 ORTHO05D000003 3.4e-06 57.8 129 31.8
Os12g0638900 Oryza sativa ssp. japonica HOM05D004079 ORTHO05D005437 5.7e-06 57.0 69 40.6
SGA_v2.0_scaffold131G34378 Striga asiatica HOM05D002635 ORTHO05D000003 7.5e-06 56.6 101 37.6
AagrBONN_evm.TU.Sc2ySwM_228.4754 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.7e-06 56.2 179 24.6
SMO271G0164 Selaginella moellendorffii HOM05D004079 ORTHO05D005437 9.7e-06 56.2 93 32.3


User provided reference genes

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