Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024541 Camellia sinensis var. sinensis HOM05D023300 ORTHO05D028398 5.5e-158 560.8 269 100.0
CSS0028143 Camellia sinensis var. sinensis HOM05D023300 ORTHO05D028398 4.8e-93 345.1 242 74.8
CSS0009100 Camellia sinensis var. sinensis HOM05D023300 ORTHO05D000006 1.5e-83 313.5 326 56.1
CSS0031047 Camellia sinensis var. sinensis HOM05D023300 ORTHO05D028398 7.6e-83 311.2 237 70.0
CSS0043478 Camellia sinensis var. sinensis HOM05D023300 ORTHO05D028398 2.7e-80 302.8 225 69.8
vmacro22917 Vaccinium macrocarpon HOM05D006909 ORTHO05D008682 3.1e-36 156.4 241 36.9
vmacro07323 Vaccinium macrocarpon HOM05D000114 ORTHO05D008682 3.5e-27 126.3 207 35.7
Rhsim03G0125100 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.0e-22 110.5 271 26.2
Rhsim08G0012400 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.4e-22 109.8 266 26.3
CSS0000140 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 3.3e-17 93.2 138 34.8
CANSAT01G1595 Cannabis sativa HOM05D000003 ORTHO05D000006 2.3e-15 87.0 321 24.9
Rhsim10G0112100 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.3e-15 87.0 337 24.9
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 6.8e-15 85.5 356 23.3
TAR536G0010 Trochodendron aralioides HOM05D000003 ORTHO05D000006 1.5e-14 84.3 315 23.5
Rhsim02G0226500 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.8e-14 82.4 240 28.3
CSS0038537 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 9.8e-14 81.6 116 38.8
CANSAT80G2809 Cannabis sativa HOM05D000003 ORTHO05D000006 2.2e-13 80.5 246 28.0
CANSAT21G0668 Cannabis sativa HOM05D000003 ORTHO05D000004 8.3e-13 78.6 323 22.9
CANSAT56G0110 Cannabis sativa HOM05D000003 ORTHO05D000006 1.9e-12 77.4 310 24.8
TAR256G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000126 2.4e-12 77.0 73 43.8
Atru.chr5.2472 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-12 76.3 70 47.1
Rhsim01G0110800 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.5e-11 73.2 291 24.1
Atru.chr1.1940 Acer truncatum HOM05D000003 ORTHO05D000004 4.6e-11 72.8 314 24.2
FvH4_6g23371 Fragaria vesca HOM05D000003 ORTHO05D000006 4.6e-11 72.8 281 25.3
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 6.0e-11 72.4 122 32.0
FvH4_4g08193 Fragaria vesca HOM05D000003 ORTHO05D000006 7.8e-11 72.0 254 22.4
QL03p010778 Quercus lobata HOM05D000003 ORTHO05D000006 7.8e-11 72.0 122 32.0
TAR346G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000006 7.8e-11 72.0 103 36.9
Atru.chr11.1735 Acer truncatum HOM05D000003 ORTHO05D000126 1.0e-10 71.6 226 24.8
QL08p005297 Quercus lobata HOM05D000003 ORTHO05D000006 1.0e-10 71.6 75 40.0
Manes.09G066957 Manihot esculenta HOM05D000003 ORTHO05D000006 1.3e-10 71.2 262 24.0
COL.COLO4_13667 Corchorus olitorius HOM05D020572 ORTHO05D000006 6.6e-10 68.9 317 22.7
CiPaw.16G004600 Carya illinoinensis HOM05D000003 ORTHO05D000006 8.6e-10 68.6 73 42.5
Rhsim09G0068100 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.1e-09 68.2 306 23.9
TPR.G7655 Trifolium pratense HOM05D000003 ORTHO05D000004 1.1e-09 68.2 79 45.6
CANSAT01G3218 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-09 67.0 229 24.9
QL02p003261 Quercus lobata HOM05D000232 ORTHO05D000126 2.5e-09 67.0 290 20.7
CANSAT01G2128 Cannabis sativa HOM05D000003 ORTHO05D000006 3.3e-09 66.6 344 20.3
Gohir.1Z049587 Gossypium hirsutum HOM05D000003 ORTHO05D000006 3.3e-09 66.6 72 43.1
PSO170G6440 Papaver somniferum HOM05D000003 ORTHO05D000004 4.3e-09 66.2 292 21.2
CANSAT21G2319 Cannabis sativa HOM05D000003 ORTHO05D000004 5.6e-09 65.9 147 29.3
CiPaw.16G000200 Carya illinoinensis HOM05D000003 ORTHO05D000006 7.3e-09 65.5 73 41.1
COL.COLO4_20949 Corchorus olitorius HOM05D000003 ORTHO05D000006 7.3e-09 65.5 144 27.1
PSO339G1478 Papaver somniferum HOM05D000003 ORTHO05D000006 7.3e-09 65.5 92 39.1
CANSAT01G1029 Cannabis sativa HOM05D000003 ORTHO05D000004 9.5e-09 65.1 81 35.8
CANSAT35G0113 Cannabis sativa HOM05D000003 ORTHO05D000004 9.5e-09 65.1 78 39.7
QL08p004291 Quercus lobata HOM05D000003 ORTHO05D000006 9.5e-09 65.1 72 37.5
Gohir.1Z049322 Gossypium hirsutum HOM05D000003 ORTHO05D000006 1.2e-08 64.7 78 41.0
Gohir.D07G146566 Gossypium hirsutum HOM05D000003 ORTHO05D000006 1.2e-08 64.7 133 28.6
Medtr1g051330 Medicago truncatula HOM05D000003 ORTHO05D000004 1.2e-08 64.7 333 22.8
PSO832G1564 Papaver somniferum HOM05D000003 ORTHO05D000006 1.6e-08 64.3 284 21.8
TWI75G0193 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.6e-08 64.3 79 39.2
Aa31LG10G8720 Aethionema arabicum HOM05D000003 ORTHO05D000006 2.1e-08 63.9 171 24.0
Aa31sc25G170 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-08 63.9 74 40.5
CANSAT11G0300 Cannabis sativa HOM05D000003 ORTHO05D000006 2.1e-08 63.9 74 37.8
CANSAT56G0533 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-08 63.5 74 36.5
TPR.G40859 Trifolium pratense HOM05D000003 ORTHO05D000004 2.8e-08 63.5 80 42.5
Aa31sc808G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.6e-08 63.2 72 41.7
CANSAT56G0584 Cannabis sativa HOM05D000003 ORTHO05D000006 3.6e-08 63.2 74 36.5
Carub.0001s0181 Capsella rubella HOM05D000003 ORTHO05D000006 3.6e-08 63.2 260 23.1
CANSAT54G2918 Cannabis sativa HOM05D000003 ORTHO05D000006 4.7e-08 62.8 147 29.9
CANSAT56G4250 Cannabis sativa HOM05D000003 ORTHO05D000004 4.7e-08 62.8 147 29.3
Gohir.1Z049785 Gossypium hirsutum HOM05D000003 ORTHO05D000006 4.7e-08 62.8 78 38.5
Gohir.A01G150118 Gossypium hirsutum HOM05D000003 ORTHO05D000006 4.7e-08 62.8 79 35.4
SEGI_26719 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 4.7e-08 62.8 269 23.0
BraA07t30522Z Brassica rapa HOM05D000003 ORTHO05D000006 6.2e-08 62.4 72 38.9
COL.COLO4_08907 Corchorus olitorius HOM05D000003 ORTHO05D000126 6.2e-08 62.4 163 26.4
COL.COLO4_20191 Corchorus olitorius HOM05D000003 ORTHO05D000006 6.2e-08 62.4 117 26.5
Nn6g35689 Nelumbo nucifera HOM05D000003 ORTHO05D000004 6.2e-08 62.4 225 29.3
Sed0025389 Sechium edule HOM05D000003 ORTHO05D000006 6.2e-08 62.4 72 43.1
COL.COLO4_37391 Corchorus olitorius HOM05D000003 ORTHO05D000006 8.1e-08 62.0 120 27.5
Aa31LG3G6020 Aethionema arabicum HOM05D000003 ORTHO05D000006 1.1e-07 61.6 73 39.7
Aa31sc130G60 Aethionema arabicum HOM05D000003 ORTHO05D000006 1.1e-07 61.6 74 37.8
CANSAT54G1425 Cannabis sativa HOM05D000003 ORTHO05D000006 1.1e-07 61.6 72 38.9
CANSAT64G2324 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 61.6 72 40.3
COL.COLO4_19177 Corchorus olitorius HOM05D000003 ORTHO05D000006 1.1e-07 61.6 135 24.4
FvH4_6g16753 Fragaria vesca HOM05D000003 ORTHO05D000006 1.1e-07 61.6 102 36.3
Gohir.D05G293550 Gossypium hirsutum HOM05D000003 ORTHO05D000006 1.1e-07 61.6 79 36.7
RcHm_v2.0_Chr1g0364721 Rosa chinensis HOM05D000003 ORTHO05D000006 1.1e-07 61.6 72 38.9
SGA_v2.0_scaffold67G22780 Striga asiatica HOM05D000003 ORTHO05D000006 1.1e-07 61.6 82 43.9
Aa31LG1G7820 Aethionema arabicum HOM05D000003 ORTHO05D000006 1.4e-07 61.2 74 39.2
Aa31LG6G15220 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-07 61.2 74 41.9
Manes.07G125402 Manihot esculenta HOM05D000003 ORTHO05D000006 1.4e-07 61.2 74 37.8
QL11p044408 Quercus lobata HOM05D000003 ORTHO05D000006 1.4e-07 61.2 72 40.3
CANSAT11G2283 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-07 60.8 95 30.5
CANSAT78G1210 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-07 60.8 72 38.9
CANSAT80G2702 Cannabis sativa HOM05D000003 ORTHO05D000006 1.8e-07 60.8 72 34.7
Gohir.1Z049687 Gossypium hirsutum HOM05D000003 ORTHO05D000006 1.8e-07 60.8 72 40.3
PSO339G1639 Papaver somniferum HOM05D000003 ORTHO05D000006 1.8e-07 60.8 114 33.3
Aa31LG11G5950 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.3e-07 60.5 74 37.8
Aa31sc128G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.3e-07 60.5 79 34.2
CANSAT25G3782 Cannabis sativa HOM05D000003 ORTHO05D000006 2.3e-07 60.5 74 32.4
CANSAT64G0903 Cannabis sativa HOM05D000003 ORTHO05D000006 2.3e-07 60.5 72 40.3
Manes.11G107251 Manihot esculenta HOM05D000003 ORTHO05D000006 2.3e-07 60.5 74 36.5
CANSAT13G0005 Cannabis sativa HOM05D000003 ORTHO05D000006 3.1e-07 60.1 72 36.1
CANSAT80G2461 Cannabis sativa HOM05D000003 ORTHO05D000006 3.1e-07 60.1 72 37.5
Gohir.A07G187699 Gossypium hirsutum HOM05D000003 ORTHO05D000006 3.1e-07 60.1 79 38.0
Manes.18G036550 Manihot esculenta HOM05D000003 ORTHO05D000006 3.1e-07 60.1 84 39.3
CANSAT25G3037 Cannabis sativa HOM05D000003 ORTHO05D000006 4.0e-07 59.7 72 36.1
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 4.0e-07 59.7 72 40.3
FvH4_5g31282 Fragaria vesca HOM05D000003 ORTHO05D000004 4.0e-07 59.7 79 35.4
Medtr6g034215 Medicago truncatula HOM05D000003 ORTHO05D000006 4.0e-07 59.7 92 37.0
RcHm_v2.0_Chr6g0249781 Rosa chinensis HOM05D000003 ORTHO05D000004 4.0e-07 59.7 343 20.1
TWI80G0001 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 4.0e-07 59.7 73 38.4
BolC4t23478H Brassica oleracea HOM05D000003 ORTHO05D000006 5.2e-07 59.3 72 37.5
CANSAT56G1417 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-07 59.3 72 37.5
CANSAT64G1654 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-07 59.3 72 36.1
CiPaw.09G186400 Carya illinoinensis HOM05D000003 ORTHO05D000006 5.2e-07 59.3 72 40.3
PSO782G4259 Papaver somniferum HOM05D000003 ORTHO05D000006 5.2e-07 59.3 73 35.6
CANSAT21G0817 Cannabis sativa HOM05D000003 ORTHO05D000006 6.8e-07 58.9 74 36.5
CANSAT35G0171 Cannabis sativa HOM05D000003 ORTHO05D000004 6.8e-07 58.9 143 25.9
COL.COLO4_07550 Corchorus olitorius HOM05D000003 ORTHO05D000006 6.8e-07 58.9 132 28.8
FvH4_2g28261 Fragaria vesca HOM05D000003 ORTHO05D000006 6.8e-07 58.9 75 42.7
FvH4_4g14101 Fragaria vesca HOM05D000003 ORTHO05D000006 6.8e-07 58.9 75 38.7
Gohir.1Z049393 Gossypium hirsutum HOM05D000003 ORTHO05D000006 6.8e-07 58.9 79 35.4
Gohir.1Z049540 Gossypium hirsutum HOM05D000003 ORTHO05D000006 6.8e-07 58.9 79 35.4
Gohir.A09G000185 Gossypium hirsutum HOM05D000003 ORTHO05D000006 6.8e-07 58.9 79 35.4
CANSAT11G0650 Cannabis sativa HOM05D000003 ORTHO05D000004 8.9e-07 58.5 310 22.9
CANSAT21G1723 Cannabis sativa HOM05D000003 ORTHO05D000004 8.9e-07 58.5 72 38.9
COL.COLO4_38120 Corchorus olitorius HOM05D000003 ORTHO05D000006 8.9e-07 58.5 93 30.1
Nn3g17029 Nelumbo nucifera HOM05D000003 ORTHO05D000006 8.9e-07 58.5 67 37.3
COL.COLO4_22209 Corchorus olitorius HOM05D000003 ORTHO05D000006 1.2e-06 58.2 93 29.0
Gohir.A09G031355 Gossypium hirsutum HOM05D000003 ORTHO05D000006 1.2e-06 58.2 74 37.8
QL02p056055 Quercus lobata HOM05D000003 ORTHO05D000126 1.2e-06 58.2 72 38.9
Rhsim06G0052000 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.2e-06 58.2 224 23.2
Sp1g31040 Schrenkiella parvula HOM05D000496 ORTHO05D000411 1.2e-06 58.2 73 37.0
Aa31LG3G5250 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.5e-06 57.8 74 35.1
CANSAT21G0975 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-06 57.8 348 19.0
CANSAT36G0004 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-06 57.8 72 36.1
CiPaw.08G126800 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.5e-06 57.8 72 37.5
COL.COLO4_16337 Corchorus olitorius HOM05D012776 ORTHO05D000006 1.5e-06 57.8 111 27.0
Gohir.A11G238400 Gossypium hirsutum HOM05D000003 ORTHO05D000006 1.5e-06 57.8 72 37.5
Manes.05G055002 Manihot esculenta HOM05D000003 ORTHO05D000004 1.5e-06 57.8 74 35.1
PSO675G8830 Papaver somniferum HOM05D000003 ORTHO05D000006 1.5e-06 57.8 95 35.8
CANSAT56G0265 Cannabis sativa HOM05D000003 ORTHO05D000006 2.0e-06 57.4 72 38.9
CANSAT56G0694 Cannabis sativa HOM05D000003 ORTHO05D000006 2.0e-06 57.4 72 37.5
FvH4_5g18832 Fragaria vesca HOM05D000003 ORTHO05D000006 2.0e-06 57.4 75 38.7
PSO017G1376 Papaver somniferum HOM05D000003 ORTHO05D000004 2.0e-06 57.4 132 27.3
Psat3g069520 Pisum sativum HOM05D003396 ORTHO05D003646 2.0e-06 57.4 125 28.8
CANSAT01G0793 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-06 57.0 72 36.1
CANSAT21G0732 Cannabis sativa HOM05D000003 ORTHO05D000006 2.6e-06 57.0 72 37.5
CANSAT35G0331 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-06 57.0 72 34.7
CANSAT56G2496 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-06 57.0 72 36.1
CANSAT64G1542 Cannabis sativa HOM05D000003 ORTHO05D000006 2.6e-06 57.0 79 34.2
Gohir.1Z049493 Gossypium hirsutum HOM05D000003 ORTHO05D000006 2.6e-06 57.0 74 36.5
Lju432C6G8 Lonicera japonica HOM05D000003 ORTHO05D000006 2.6e-06 57.0 74 35.1
CANSAT56G2039 Cannabis sativa HOM05D000003 ORTHO05D000004 3.4e-06 56.6 72 34.7
COL.COLO4_24628 Corchorus olitorius HOM05D007567 ORTHO05D000006 4.4e-06 56.2 168 24.4
FvH4_6g23032 Fragaria vesca HOM05D000003 ORTHO05D017879 4.4e-06 56.2 74 39.2
Gohir.A02G127801 Gossypium hirsutum HOM05D000003 ORTHO05D000006 4.4e-06 56.2 72 37.5
RcHm_v2.0_Chr1g0344541 Rosa chinensis HOM05D000003 ORTHO05D000004 4.4e-06 56.2 86 33.7
CANSAT21G0602 Cannabis sativa HOM05D000003 ORTHO05D000006 5.8e-06 55.8 72 38.9
CANSAT56G2204 Cannabis sativa HOM05D000003 ORTHO05D000004 5.8e-06 55.8 74 35.1
CANSAT56G2798 Cannabis sativa HOM05D000003 ORTHO05D000006 5.8e-06 55.8 150 27.3
CANSAT78G1810 Cannabis sativa HOM05D000003 ORTHO05D000004 5.8e-06 55.8 72 37.5
CiPaw.01G073500 Carya illinoinensis HOM05D000003 ORTHO05D000006 5.8e-06 55.8 74 37.8
FvH4_3g37471 Fragaria vesca HOM05D000003 ORTHO05D000006 5.8e-06 55.8 75 37.3
Rhsim05G0162800 Rhododendron simsii HOM05D001637 ORTHO05D000006 5.8e-06 55.8 85 32.9
BcaC05g27684 Brassica carinata HOM05D000003 ORTHO05D000006 7.5e-06 55.5 74 37.8
CANSAT54G1077 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-06 55.5 72 33.3
Atru.chr13.2346 Acer truncatum HOM05D000003 ORTHO05D000004 9.9e-06 55.1 72 33.3
Aa31LG6G3790 Aethionema arabicum HOM05D000003 ORTHO05D000006 9.9e-06 55.1 75 34.7
Aa31LG6G7750 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.9e-06 55.1 75 34.7
CANSAT11G0329 Cannabis sativa HOM05D000003 ORTHO05D000004 9.9e-06 55.1 72 33.3
COL.COLO4_19781 Corchorus olitorius HOM05D000003 ORTHO05D000006 9.9e-06 55.1 85 35.3
COL.COLO4_26422 Corchorus olitorius HOM05D000003 ORTHO05D000006 9.9e-06 55.1 74 36.5
Hma1.2p1_0266F.1_g106910 Hydrangea macrophylla HOM05D000003 ORTHO05D000006 9.9e-06 55.1 76 39.5
PSO017G3046 Papaver somniferum HOM05D053590 ORTHO05D000006 9.9e-06 55.1 73 35.6
PSO170G3076 Papaver somniferum HOM05D000003 ORTHO05D000006 9.9e-06 55.1 117 28.2
Rhsim02G0238600 Rhododendron simsii HOM05D000003 ORTHO05D000006 9.9e-06 55.1 85 32.9


User provided reference genes

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