Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 3.9e-81 304.7 148 100.0
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 8.8e-49 197.2 100 97.0
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.3e-36 156.0 86 86.0
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 1.5e-35 153.3 86 84.9
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.3e-35 151.8 88 84.1
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 5.6e-35 151.4 86 83.7
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 6.1e-34 147.9 86 81.4
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 1.8e-33 146.4 86 81.4
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 6.8e-33 144.4 86 80.2
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.4e-32 142.1 102 71.6
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 5.8e-32 141.4 86 76.7
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 7.5e-32 141.0 86 77.9
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 7.5e-32 141.0 86 75.6
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.3e-31 140.2 86 76.7
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.3e-31 140.2 86 80.2
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.7e-31 139.8 87 75.9
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 4.9e-31 138.3 86 77.9
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 4.9e-31 138.3 86 76.7
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 4.9e-31 138.3 86 74.4
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 6.4e-31 137.9 94 70.2
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 8.3e-31 137.5 86 73.3
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 8.3e-31 137.5 87 78.2
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.9e-30 136.3 86 74.4
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 2.4e-30 136.0 86 72.1
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.6e-29 133.3 86 74.4
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 2.0e-29 132.9 86 75.6
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 2.7e-29 132.5 86 74.4
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.6e-29 131.7 89 73.0
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 6.0e-29 131.3 86 72.1
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 7.8e-29 131.0 86 69.8
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 7.8e-29 131.0 85 71.8
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 7.8e-29 131.0 86 70.9
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 1.0e-28 130.6 88 72.7
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.0e-28 130.6 86 73.3
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.3e-28 130.2 86 72.1
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 1.3e-28 130.2 86 69.8
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.7e-28 129.8 86 73.3
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.7e-28 129.8 86 72.1
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.7e-28 129.8 86 74.4
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 2.3e-28 129.4 86 72.1
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 3.9e-28 128.6 86 70.9
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 3.9e-28 128.6 86 68.6
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 5.0e-28 128.3 86 67.4
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 5.0e-28 128.3 83 73.5
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 6.6e-28 127.9 86 73.3
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 1.1e-27 127.1 87 72.4
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.9e-27 126.3 81 76.5
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 1.9e-27 126.3 87 72.4
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 1.9e-27 126.3 86 70.9
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 2.5e-27 125.9 88 69.3
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 3.3e-27 125.6 86 67.4
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 3.3e-27 125.6 86 69.8
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 3.3e-27 125.6 86 68.6
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 3.3e-27 125.6 86 68.6
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 3.3e-27 125.6 86 69.8
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 3.3e-27 125.6 86 70.9
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 5.6e-27 124.8 86 67.4
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 7.3e-27 124.4 86 65.1
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 9.5e-27 124.0 86 67.4
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 9.5e-27 124.0 86 68.6
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 9.5e-27 124.0 86 65.1
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 1.2e-26 123.6 86 66.3
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 1.6e-26 123.2 86 68.6
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 2.1e-26 122.9 86 67.4
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 3.6e-26 122.1 86 68.6
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 3.6e-26 122.1 86 68.6
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 4.7e-26 121.7 86 65.1
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 4.7e-26 121.7 86 66.3
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 4.7e-26 121.7 85 69.4
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 6.2e-26 121.3 86 66.3
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 6.2e-26 121.3 86 66.3
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 1.8e-25 119.8 86 66.3
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 2.3e-25 119.4 86 66.3
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 2.3e-25 119.4 86 69.8
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 2.3e-25 119.4 86 64.0
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 6.8e-25 117.9 86 66.3
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 1.2e-24 117.1 86 61.6
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 2.0e-24 116.3 86 65.1
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 9.8e-24 114.0 87 65.5
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 9.8e-24 114.0 91 62.6
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 2.9e-23 112.5 86 64.0
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 4.9e-23 111.7 87 62.1
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.9e-23 111.7 87 62.1
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 6.4e-23 111.3 75 70.7
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 4.1e-22 108.6 86 66.3
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.2e-21 107.1 86 60.5
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 3.5e-21 105.5 86 60.5
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 7.8e-21 104.4 54 94.4
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 6.6e-20 101.3 86 58.1
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.9e-19 99.8 87 59.8
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 4.3e-19 98.6 72 62.5
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 4.3e-19 98.6 72 62.5
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 9.5e-19 97.4 86 53.5
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 1.6e-18 96.7 86 57.0
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 6.8e-17 91.3 86 50.0
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.1e-14 82.0 60 63.3
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 9.2e-14 80.9 63 60.3
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 1.2e-13 80.5 54 68.5
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 1.6e-13 80.1 54 68.5
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 2.1e-13 79.7 86 44.2
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 4.6e-13 78.6 86 45.3
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.1e-12 75.1 48 79.2
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 1.1e-11 73.9 70 51.4
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 5.6e-11 71.6 83 49.4
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 7.3e-11 71.2 92 39.1
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 9.5e-11 70.9 69 50.7
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 1.2e-10 70.5 53 60.4
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 1.6e-10 70.1 56 55.4
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.7e-10 68.6 57 56.1
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.8e-09 66.6 61 52.5
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.8e-09 66.6 54 57.4
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 1.5e-08 63.5 67 47.8
GSVIVG01037115001 Vitis vinifera HOM05D004498 ORTHO05D005300 6.4e-07 58.2 49 57.1
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 6.4e-07 58.2 77 42.9


User provided reference genes

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