Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024507 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 0.0e+00 1227.2 654 100.0
CSS0020970 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 0.0e+00 1133.6 655 94.7
Actinidia12143 Actinidia chinensis HOM05D004530 ORTHO05D005839 1.1e-132 478.0 653 47.0
vmacro13497 Vaccinium macrocarpon HOM05D004530 ORTHO05D005839 4.8e-123 446.0 652 44.6
Rhsim07G0036000 Rhododendron simsii HOM05D004530 ORTHO05D005839 1.3e-115 421.4 652 43.4
Dinv44062 Davidia involucrata HOM05D004530 ORTHO05D005839 4.7e-102 376.3 578 44.6
Hma1.2p1_0041F.1_g025350 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 3.1e-98 363.6 594 42.3
GSVIVG01018280001 Vitis vinifera HOM05D004530 ORTHO05D005839 1.1e-87 328.6 601 39.3
Migut.B01535 Erythranthe guttata HOM05D004530 ORTHO05D005839 1.5e-87 328.2 590 37.6
TAR629G3313 Trochodendron aralioides HOM05D004530 ORTHO05D005839 4.7e-86 323.2 602 38.2
QL04p030285 Quercus lobata HOM05D004530 ORTHO05D005839 1.4e-85 321.6 599 38.6
Ca_25804_v3 Cicer arietinum L. HOM05D004530 ORTHO05D005839 2.0e-84 317.8 596 37.4
TAR375G0493 Trochodendron aralioides HOM05D004530 ORTHO05D005839 2.6e-84 317.4 607 37.1
Eucgr.E01549 Eucalyptus grandis HOM05D004530 ORTHO05D005839 3.4e-84 317.0 608 38.3
Psat4g224840 Pisum sativum HOM05D004530 ORTHO05D005839 5.8e-84 316.2 606 36.5
Thecc.01G394900 Theobroma cacao HOM05D004530 ORTHO05D005839 5.8e-84 316.2 607 36.2
Medtr8g006895 Medicago truncatula HOM05D004530 ORTHO05D005839 2.9e-83 313.9 600 36.0
TPR.G33134 Trifolium pratense HOM05D004530 ORTHO05D005839 2.9e-83 313.9 593 37.8
MSTRG.20690 Avicennia marina HOM05D004530 ORTHO05D005839 1.1e-82 312.0 593 36.3
Haze_02848 Corylus avellana HOM05D004530 ORTHO05D005839 1.1e-82 312.0 602 38.0
Ciclev10019258m.g Citrus clementina HOM05D004530 ORTHO05D005839 5.4e-82 309.7 594 37.5
COL.COLO4_12407 Corchorus olitorius HOM05D004530 ORTHO05D005839 1.6e-81 308.1 602 35.7
SalBow5G0820 Salvia bowleyana HOM05D004530 ORTHO05D005839 2.1e-81 307.8 596 36.7
Glyma.10G120400 Glycine max HOM05D004530 ORTHO05D005839 4.6e-81 306.6 592 36.5
Manes.01G274600 Manihot esculenta HOM05D004530 ORTHO05D005839 4.6e-81 306.6 594 37.4
Lj3g0003084 Lotus japonicus HOM05D004530 ORTHO05D005839 1.0e-80 305.4 592 36.7
Duzib133G0606 Durio zibethinus HOM05D004530 ORTHO05D005839 2.3e-80 304.3 594 36.9
Duzib138G0269 Durio zibethinus HOM05D004530 ORTHO05D005839 5.1e-80 303.1 593 36.3
Gohir.A08G138600 Gossypium hirsutum HOM05D004530 ORTHO05D005839 5.1e-80 303.1 601 36.4
Phvul.010G049900 Phaseolus vulgaris HOM05D004530 ORTHO05D005839 5.1e-80 303.1 597 36.5
Atru.chr5.126 Acer truncatum HOM05D004530 ORTHO05D005839 1.9e-79 301.2 598 36.0
MD07G1109200 Malus domestica HOM05D004530 ORTHO05D005839 2.5e-79 300.8 609 35.6
Lsat_1_v5_gn_3_126420 Lactuca sativa HOM05D004530 ORTHO05D005839 4.3e-79 300.1 588 37.9
Gorai.004G166100 Gossypium raimondii HOM05D004530 ORTHO05D005839 5.6e-79 299.7 608 36.2
Lalb_Chr12g0210571 Lupinus albus HOM05D004530 ORTHO05D005839 2.8e-78 297.4 595 36.0
MD02G1212800 Malus domestica HOM05D004530 ORTHO05D005839 8.1e-78 295.8 608 36.3
Nn1g00849 Nelumbo nucifera HOM05D004530 ORTHO05D005839 5.2e-77 293.1 590 33.9
Hund27405 Selenicereus undatus HOM05D004530 ORTHO05D005839 6.8e-77 292.7 590 37.6
CAN.G1473.6 Capsicum annuum HOM05D004530 ORTHO05D005839 8.9e-77 292.4 587 36.3
Glyma.20G070800 Glycine max HOM05D004530 ORTHO05D005839 8.9e-77 292.4 574 37.6
Potri.014G047600 Populus trichocarpa HOM05D004530 ORTHO05D005839 1.2e-76 292.0 595 36.0
HanXRQChr03g0093061 Helianthus annuus HOM05D004530 ORTHO05D005839 5.8e-76 289.7 588 36.4
Hund17085 Selenicereus undatus HOM05D004530 ORTHO05D005839 9.9e-76 288.9 603 36.7
arahy.Tifrunner.gnm1.ann1.WR8IC8 Arachis hypogaea HOM05D004530 ORTHO05D005839 1.3e-75 288.5 603 35.2
Nn6g33827 Nelumbo nucifera HOM05D004530 ORTHO05D005839 1.1e-74 285.4 595 34.6
PGR042G2176 Punica granatum HOM05D004530 ORTHO05D005839 1.4e-74 285.0 608 34.0
arahy.Tifrunner.gnm1.ann1.BH8PB4 Arachis hypogaea HOM05D004530 ORTHO05D005839 1.9e-74 284.6 603 34.8
AUR62013743 Chenopodium quinoa HOM05D004530 ORTHO05D005839 2.4e-74 284.3 594 35.2
VMungo0331G0336 Vigna mungo HOM05D004530 ORTHO05D005839 4.1e-74 283.5 583 37.6
DCAR_029469 Daucus carota HOM05D004530 ORTHO05D005839 1.2e-73 282.0 623 34.8
Solyc01g090230.3 Solanum lycopersicum HOM05D004530 ORTHO05D005839 2.7e-73 280.8 592 35.8
Sopen01g036030 Solanum pennellii HOM05D004530 ORTHO05D005839 2.3e-72 277.7 587 35.6
TWI59G1339 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 2.3e-72 277.7 591 34.3
Aqoxy7G00763 Aquilegia oxysepala HOM05D004530 ORTHO05D005839 6.6e-72 276.2 609 33.8
PSO675G1201 Papaver somniferum HOM05D004530 ORTHO05D005839 8.6e-72 275.8 609 35.3
PSO732G0778 Papaver somniferum HOM05D004530 ORTHO05D005839 1.1e-71 275.4 604 34.8
CiPaw.13G026100 Carya illinoinensis HOM05D004530 ORTHO05D005839 1.9e-71 274.6 655 32.7
Ah.05g173100 Amaranthus hybridus HOM05D004530 ORTHO05D005839 2.5e-71 274.2 581 37.5
Sed0010787 Sechium edule HOM05D004530 ORTHO05D005839 9.5e-71 272.3 599 35.4
ECA240G1126 Erigeron canadensis HOM05D004530 ORTHO05D005839 1.2e-70 271.9 588 34.7
CsaV3_3G007220 Cucumis sativus L. HOM05D004530 ORTHO05D005839 1.8e-69 268.1 593 35.1
FAN06G5079 Fragaria x ananassa HOM05D004530 ORTHO05D005839 6.8e-69 266.2 600 34.0
FvH4_7g10200 Fragaria vesca HOM05D004530 ORTHO05D005839 8.9e-69 265.8 596 34.1
Gorai.008G108800 Gossypium raimondii HOM05D004530 ORTHO05D005839 8.9e-69 265.8 599 35.1
Lalb_Chr07g0195421 Lupinus albus HOM05D004530 ORTHO05D005839 1.2e-68 265.4 590 32.9
Gohir.D12G099900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 2.0e-68 264.6 599 35.1
FAN10G1666 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.6e-68 264.2 600 33.7
TWI14G0541 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 5.8e-68 263.1 591 33.8
EL10Ac1g00762 Beta vulgaris HOM05D004530 ORTHO05D005839 9.9e-68 262.3 633 34.0
FAN01G0552 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.3e-67 261.9 600 34.2
MELO3C005943.2 Cucumis melo HOM05D004530 ORTHO05D005839 1.7e-67 261.5 601 34.4
FAN03G1354 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.2e-67 261.2 600 33.2
FAN10G4098 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.2e-67 261.2 600 33.3
AUR62043872 Chenopodium quinoa HOM05D004530 ORTHO05D005839 8.4e-67 259.2 597 33.7
Cc02_g25120 Coffea canephora HOM05D004530 ORTHO05D005839 3.5e-65 253.8 521 36.7
THA.LOC104817000 Tarenaya hassleriana HOM05D004530 ORTHO05D005839 6.0e-65 253.1 595 33.3
PSO832G0798 Papaver somniferum HOM05D004530 ORTHO05D005839 2.3e-64 251.1 594 32.5
Sabra14G0034600 Salix brachista HOM05D004530 ORTHO05D005839 5.6e-63 246.5 607 33.4
RcHm_v2.0_Chr1g0347921 Rosa chinensis HOM05D004530 ORTHO05D005839 6.9e-61 239.6 575 33.4
ATR0057G115 Amborella trichopoda HOM05D004530 ORTHO05D005839 2.6e-60 237.7 607 31.1
A10p00110 Brassica napus HOM05D004530 ORTHO05D005839 4.4e-60 236.9 587 32.4
BraA10t42289Z Brassica rapa HOM05D004530 ORTHO05D005839 4.4e-60 236.9 587 32.4
MBI04_g41763_MAGBIO Magnolia biondii HOM05D004530 ORTHO05D005839 7.6e-60 236.1 598 32.6
C05p00080 Brassica napus HOM05D004530 ORTHO05D005839 9.9e-60 235.7 590 32.5
BolC5t28795H Brassica oleracea HOM05D004530 ORTHO05D005839 9.9e-60 235.7 590 32.5
BcaB03g13633 Brassica carinata HOM05D004530 ORTHO05D005839 1.3e-59 235.3 589 33.1
Thhalv10007106m.g Eutrema salsugineum HOM05D004530 ORTHO05D005839 2.4e-58 231.1 592 31.6
AUR62023408 Chenopodium quinoa HOM05D004530 ORTHO05D005839 7.1e-58 229.6 588 32.5
Gohir.A12G097000 Gossypium hirsutum HOM05D004530 ORTHO05D005839 7.1e-58 229.6 596 32.4
Gohir.D08G159900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 1.2e-57 228.8 457 36.5
unitig_26.g9593 Utricularia gibba HOM05D004530 ORTHO05D005839 7.8e-57 226.1 589 31.9
Gorai.004G070300 Gossypium raimondii HOM05D004530 ORTHO05D005839 9.6e-55 219.2 577 32.4
AL1G10110 Arabidopsis lyrata HOM05D004530 ORTHO05D005839 1.4e-53 215.3 592 31.1
FAN06G2217 Fragaria x ananassa HOM05D004530 ORTHO05D005839 7.6e-52 209.5 592 31.2
Potri.002G137800 Populus trichocarpa HOM05D004530 ORTHO05D005839 7.6e-52 209.5 413 35.8
Carub.0001s0010 Capsella rubella HOM05D004530 ORTHO05D005839 1.3e-51 208.8 591 31.1
Sc26g0001580 Simmondsia chinensis HOM05D004530 ORTHO05D005839 2.2e-51 208.0 518 33.2
ClCG05G000120 Citrullus lanatus HOM05D004530 ORTHO05D005839 8.4e-51 206.1 363 38.8
TPR.G23922 Trifolium pratense HOM05D004530 ORTHO05D005839 1.9e-50 204.9 200 57.0
CARHR000210 Cardamine hirsuta HOM05D004530 ORTHO05D005839 7.1e-50 203.0 587 31.7
Prupe.2G131900 Prunus persica HOM05D004530 ORTHO05D005839 1.1e-47 195.7 413 34.1
Aa31LG1G11480 Aethionema arabicum HOM05D004530 ORTHO05D005839 1.5e-47 195.3 313 41.2
Zm00001eb105340 Zea mays HOM05D004530 ORTHO05D005839 1.5e-44 185.3 595 29.1
Zm00001eb321770 Zea mays HOM05D004530 ORTHO05D005839 5.8e-44 183.3 599 28.0
Peaxi162Scf00475g00418 Petunia axillaris HOM05D004530 ORTHO05D005839 9.9e-44 182.6 246 47.2
AT1G02120 Arabidopsis thaliana HOM05D004530 ORTHO05D005839 1.1e-42 179.1 399 32.3
Gohir.D08G067550 Gossypium hirsutum HOM05D004530 ORTHO05D005839 1.2e-41 175.6 386 33.9
Mapoly0083s0023 Marchantia polymorpha HOM05D004530 ORTHO05D005839 4.6e-41 173.7 622 27.3
CDE11G0737 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.8e-40 171.8 511 31.1
Pp3c9_25660 Physcomitrium patens HOM05D004530 ORTHO05D005839 1.4e-37 162.2 629 26.6
SGA_v2.0_scaffold52G19226 Striga asiatica HOM05D004530 ORTHO05D005839 1.8e-37 161.8 479 31.5
CDE06G0463 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.2e-36 159.1 589 27.0
Ah.05g174020 Amaranthus hybridus HOM05D004530 ORTHO05D005839 1.7e-35 155.2 282 39.4
Cc00_g35630 Coffea canephora HOM05D004530 ORTHO05D005839 2.9e-35 154.5 216 43.5
AagrBONN_evm.TU.Sc2ySwM_117.1176 Anthoceros agrestis HOM05D004530 ORTHO05D005839 4.9e-35 153.7 651 26.7
Gohir.A08G058400 Gossypium hirsutum HOM05D004530 ORTHO05D005839 1.1e-34 152.5 564 28.9
Os07g0491600 Oryza sativa ssp. japonica HOM05D004530 ORTHO05D005839 6.0e-33 146.7 264 36.4
HPP92_022509 Vanilla planifolia HOM05D004530 ORTHO05D005839 4.1e-29 134.0 372 32.3
CBR_g3459 Chara braunii HOM05D004530 ORTHO05D000353 2.0e-28 131.7 414 27.8
SMO228G0106 Selaginella moellendorffii HOM05D004530 ORTHO05D005839 1.6e-25 122.1 400 27.0
Lj7A546T15 Lonicera japonica HOM05D004530 ORTHO05D005839 4.8e-22 110.5 174 41.4
Hma1.2p1_0041F.1_g025360 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 2.4e-21 108.2 129 52.7
Actinidia32503 Actinidia chinensis HOM05D004530 ORTHO05D037961 1.7e-19 102.1 126 47.6
Cpa.g.sc22.81 Carica papaya HOM05D004530 ORTHO05D005839 2.2e-19 101.7 89 58.4
Nitab4.5_0007027g0030 Nicotiana tabacum HOM05D004530 ORTHO05D005839 1.4e-18 99.0 98 55.1
Nitab4.5_0000920g0020 Nicotiana tabacum HOM05D004530 ORTHO05D005839 7.2e-18 96.7 98 54.1
Lj9A557G31 Lonicera japonica HOM05D004530 ORTHO05D005839 1.0e-16 92.8 110 50.9
Ah.05g174030 Amaranthus hybridus HOM05D004530 ORTHO05D005839 1.8e-16 92.0 85 57.6
Hma1.2p1_0041F.1_g025340 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 1.1e-15 89.4 78 60.3
CDE06G0904 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 2.6e-15 88.2 149 36.2
CiPaw.03G262200 Carya illinoinensis HOM05D004530 ORTHO05D005839 2.8e-14 84.7 89 49.4
Aa31LG1G11490 Aethionema arabicum HOM05D004530 ORTHO05D005839 1.4e-13 82.4 77 53.2
Cfa011069 Carpinus fangiana HOM05D004530 ORTHO05D005839 1.4e-13 82.4 77 55.8
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 1.8e-13 82.0 339 27.4
PRCOL_00001515 Prasinoderma coloniale HOM05D004530 ORTHO05D005839 2.4e-13 81.6 110 39.1
Cpa.g.sc22.80 Carica papaya HOM05D004530 ORTHO05D005839 2.2e-11 75.1 188 31.9
Lsat_1_v5_gn_3_119640 Lactuca sativa HOM05D004530 ORTHO05D048377 6.5e-11 73.6 129 38.0
SEGI_20424 Sequoiadendron giganteum HOM05D004530 ORTHO05D005839 6.5e-11 73.6 93 43.0
CDE07G0055 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.6e-09 68.9 75 46.7
Cre16.g664050 Chlamydomonas reinhardtii HOM05D004530 ORTHO05D005839 1.8e-08 65.5 105 28.6
Lj9A557T37 Lonicera japonica HOM05D004530 ORTHO05D005839 8.8e-08 63.2 128 34.4
Gohir.D12G111650 Gossypium hirsutum HOM05D004530 ORTHO05D005839 4.4e-07 60.8 32 81.2
Gorai.008G121000 Gossypium raimondii HOM05D004530 ORTHO05D005839 1.3e-06 59.3 35 74.3


User provided reference genes

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