Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024498 Camellia sinensis var. sinensis HOM05D002206 ORTHO05D002219 2.2e-205 718.8 365 100.0
Actinidia39083 Actinidia chinensis HOM05D002206 ORTHO05D002219 5.2e-127 458.4 306 77.1
Dinv04034 Davidia involucrata HOM05D002206 ORTHO05D002219 1.0e-114 417.5 305 73.1
Rhsim12G0209300 Rhododendron simsii HOM05D002206 ORTHO05D002219 2.7e-107 392.9 306 69.3
GSVIVG01016777001 Vitis vinifera HOM05D002206 ORTHO05D002219 1.4e-95 354.0 275 68.0
TAR624G0441 Trochodendron aralioides HOM05D002206 ORTHO05D002219 4.1e-95 352.4 319 61.1
Hma1.2p1_0291F.1_g115170 Hydrangea macrophylla HOM05D002206 ORTHO05D002219 8.4e-93 344.7 287 64.5
Lj5A38T41 Lonicera japonica HOM05D002206 ORTHO05D002219 1.4e-92 344.0 328 61.6
TAR626G1279 Trochodendron aralioides HOM05D002206 ORTHO05D002219 1.3e-90 337.4 368 55.4
CiPaw.02G136600 Carya illinoinensis HOM05D002206 ORTHO05D002219 1.4e-87 327.4 302 61.9
QL05p008151 Quercus lobata HOM05D002206 ORTHO05D002219 1.9e-84 317.0 319 58.6
Cfa003540 Carpinus fangiana HOM05D002206 ORTHO05D002219 5.5e-84 315.5 311 57.2
Hma1.2p1_0496F.1_g166190 Hydrangea macrophylla HOM05D002206 ORTHO05D002219 7.9e-83 311.6 284 62.0
Haze_16020 Corylus avellana HOM05D002206 ORTHO05D002219 1.8e-82 310.5 279 61.6
Prupe.3G042900 Prunus persica HOM05D002206 ORTHO05D002219 1.3e-80 304.3 276 60.5
Cpa.g.sc25.107 Carica papaya HOM05D002206 ORTHO05D002219 3.1e-79 299.7 276 58.7
Gohir.D10G054800 Gossypium hirsutum HOM05D002206 ORTHO05D002219 6.9e-79 298.5 319 53.9
Gorai.011G058300 Gossypium raimondii HOM05D002206 ORTHO05D002219 9.1e-79 298.1 319 53.9
Sabra03G0037200 Salix brachista HOM05D002206 ORTHO05D002219 1.5e-78 297.4 274 59.5
Duzib192G0904 Durio zibethinus HOM05D002206 ORTHO05D002219 2.0e-78 297.0 307 56.4
vmacro17055 Vaccinium macrocarpon HOM05D002206 ORTHO05D002219 2.6e-78 296.6 307 57.0
COL.COLO4_30770 Corchorus olitorius HOM05D002206 ORTHO05D002219 2.2e-77 293.5 304 56.6
Potri.003G063700 Populus trichocarpa HOM05D002206 ORTHO05D002219 2.2e-77 293.5 316 54.4
CiPaw.01G219900 Carya illinoinensis HOM05D002206 ORTHO05D002219 5.0e-77 292.4 317 53.3
Nn8g38715 Nelumbo nucifera HOM05D002206 ORTHO05D002219 1.9e-76 290.4 340 53.2
Gohir.A10G053000 Gossypium hirsutum HOM05D002206 ORTHO05D002219 4.2e-76 289.3 319 52.7
Thecc.06G118700 Theobroma cacao HOM05D002206 ORTHO05D002219 1.2e-75 287.7 274 59.9
MD09G1184800 Malus domestica HOM05D002206 ORTHO05D002219 3.6e-75 286.2 338 52.7
RcHm_v2.0_Chr2g0145091 Rosa chinensis HOM05D002206 ORTHO05D002219 5.1e-74 282.3 319 53.9
MD17G1168700 Malus domestica HOM05D002206 ORTHO05D002219 4.4e-73 279.3 338 51.2
DCAR_007643 Daucus carota HOM05D002206 ORTHO05D002219 1.7e-72 277.3 305 53.1
Potri.001G170200 Populus trichocarpa HOM05D002206 ORTHO05D002219 1.4e-71 274.2 317 52.7
FAN09G1436 Fragaria x ananassa HOM05D002206 ORTHO05D002219 1.8e-71 273.9 312 51.6
CANSAT56G1008 Cannabis sativa HOM05D002206 ORTHO05D002219 2.4e-71 273.5 323 52.0
FvH4_6g34560 Fragaria vesca HOM05D002206 ORTHO05D002219 2.4e-71 273.5 312 51.9
FAN05G1508 Fragaria x ananassa HOM05D002206 ORTHO05D002219 2.4e-71 273.5 304 53.0
Duzib160G0193 Durio zibethinus HOM05D002206 ORTHO05D002219 3.1e-71 273.1 283 56.2
FAN14G4975 Fragaria x ananassa HOM05D002206 ORTHO05D002219 5.3e-71 272.3 312 51.3
Manes.04G143700 Manihot esculenta HOM05D002206 ORTHO05D002219 5.9e-70 268.9 276 56.9
Duzib235G0320 Durio zibethinus HOM05D002206 ORTHO05D002219 1.3e-69 267.7 242 59.9
FAN02G0106 Fragaria x ananassa HOM05D002206 ORTHO05D002219 1.3e-69 267.7 311 51.1
Migut.D00942 Erythranthe guttata HOM05D002206 ORTHO05D002219 1.7e-69 267.3 307 51.5
Manes.11G021500 Manihot esculenta HOM05D002206 ORTHO05D002219 1.7e-69 267.3 278 57.2
Oeu007565.1 Olea europaea HOM05D002206 ORTHO05D002219 2.9e-69 266.5 308 53.9
Ciclev10025094m.g Citrus clementina HOM05D002206 ORTHO05D002219 3.8e-69 266.2 331 50.2
PGSC0003DMG400002481 Solanum tuberosum HOM05D002206 ORTHO05D002219 6.5e-69 265.4 299 51.2
TWI75G1747 Tripterygium wilfordii HOM05D002206 ORTHO05D002219 8.5e-69 265.0 337 48.4
Sopen03g040810 Solanum pennellii HOM05D002206 ORTHO05D002219 1.9e-68 263.8 318 48.7
Solyc03g121990.4 Solanum lycopersicum HOM05D002206 ORTHO05D002219 4.7e-67 259.2 299 50.2
CAN.G862.28 Capsicum annuum HOM05D002206 ORTHO05D002219 6.1e-67 258.8 299 49.5
HanXRQChr10g0312061 Helianthus annuus HOM05D002206 ORTHO05D002219 1.0e-66 258.1 304 51.6
Oeu058722.2 Olea europaea HOM05D002206 ORTHO05D002219 2.3e-66 256.9 318 50.9
MBI13_g11364_MAGBIO Magnolia biondii HOM05D002206 ORTHO05D002219 2.0e-65 253.8 334 48.2
Peaxi162Scf00038g01824 Petunia axillaris HOM05D002206 ORTHO05D002219 1.3e-64 251.1 320 48.4
Lj3g0019571 Lotus japonicus HOM05D002206 ORTHO05D002219 1.7e-64 250.8 296 50.7
Psat4g183000 Pisum sativum HOM05D002206 ORTHO05D002219 2.2e-64 250.4 302 48.7
MSTRG.4788 Avicennia marina HOM05D002206 ORTHO05D002219 2.8e-64 250.0 365 47.1
Sabra01G0141100 Salix brachista HOM05D002206 ORTHO05D002219 1.1e-63 248.1 311 49.2
ECA234G1457 Erigeron canadensis HOM05D002206 ORTHO05D002219 1.4e-63 247.7 331 46.5
Nitab4.5_0002072g0040 Nicotiana tabacum HOM05D002206 ORTHO05D002219 2.4e-63 246.9 321 48.0
Nitab4.5_0012253g0010 Nicotiana tabacum HOM05D002206 ORTHO05D002219 1.2e-62 244.6 321 47.7
Atru.chr1.3913_Atru.chr1.3914 Acer truncatum HOM05D002206 ORTHO05D002219 2.0e-62 243.8 317 48.3
Ca_05006_v3 Cicer arietinum L. HOM05D002206 ORTHO05D002219 3.8e-61 239.6 279 50.9
Medtr8g020330 Medicago truncatula HOM05D002206 ORTHO05D002219 8.5e-61 238.4 307 47.6
Glyma.16G006500 Glycine max HOM05D002206 ORTHO05D002219 1.1e-60 238.0 294 48.6
ATR0598G183 Amborella trichopoda HOM05D002206 ORTHO05D002219 1.9e-60 237.3 291 50.2
Glyma.07G037100 Glycine max HOM05D002206 ORTHO05D002219 5.5e-60 235.7 295 48.5
PSO421G0732 Papaver somniferum HOM05D002206 ORTHO05D002219 6.1e-59 232.3 343 45.2
Phvul.010G131400 Phaseolus vulgaris HOM05D002206 ORTHO05D002219 1.8e-58 230.7 310 47.1
Sc10g0007860 Simmondsia chinensis HOM05D002206 ORTHO05D002219 4.0e-58 229.6 318 46.2
Aqoxy7G01087 Aquilegia oxysepala HOM05D002206 ORTHO05D002219 8.8e-58 228.4 344 45.3
Lalb_Chr04g0263411 Lupinus albus HOM05D002206 ORTHO05D002219 3.4e-57 226.5 293 46.1
PSO063G5513 Papaver somniferum HOM05D002206 ORTHO05D002219 5.7e-57 225.7 338 45.3
TPR.G32506 Trifolium pratense HOM05D002206 ORTHO05D002219 7.5e-57 225.3 291 47.8
VMungo0331G1548 Vigna mungo HOM05D002206 ORTHO05D002219 7.5e-57 225.3 287 48.8
SalBow7G3112 Salvia bowleyana HOM05D002206 ORTHO05D002219 2.8e-56 223.4 300 45.7
arahy.Tifrunner.gnm1.ann1.HCBU45 Arachis hypogaea HOM05D002206 ORTHO05D002219 4.8e-56 222.6 285 50.2
CsaV3_7G034530 Cucumis sativus L. HOM05D001583 ORTHO05D001900 1.1e-55 221.5 275 48.0
PGR102G2864 Punica granatum HOM05D002206 ORTHO05D002219 1.8e-55 220.7 284 49.3
Lsat_1_v5_gn_5_135921 Lactuca sativa HOM05D002206 ORTHO05D002219 9.1e-55 218.4 312 47.1
Sed0013927 Sechium edule HOM05D002206 ORTHO05D002219 7.7e-54 215.3 277 46.9
SGA_v2.0_scaffold68G22883 Striga asiatica HOM05D002206 ORTHO05D002219 3.2e-52 209.9 337 42.7
Eucgr.J02823 Eucalyptus grandis HOM05D002206 ORTHO05D002219 5.5e-52 209.1 331 42.3
AUR62009879 Chenopodium quinoa HOM05D002206 ORTHO05D002219 2.3e-50 203.8 301 44.2
THA.LOC104808052 Tarenaya hassleriana HOM05D002206 ORTHO05D002219 2.6e-49 200.3 288 44.1
AUR62001491 Chenopodium quinoa HOM05D002206 ORTHO05D002219 1.7e-48 197.6 293 44.4
Cc00_g25540 Coffea canephora HOM05D002206 ORTHO05D002219 3.7e-48 196.4 267 46.1
EL10Ac7g16404 Beta vulgaris HOM05D002206 ORTHO05D002219 4.9e-48 196.1 317 43.5
Hund05742 Selenicereus undatus HOM05D002206 ORTHO05D002219 4.9e-48 196.1 338 42.3
CARHR065570 Cardamine hirsuta HOM05D002206 ORTHO05D002219 2.4e-47 193.7 302 44.7
AL2G32330 Arabidopsis lyrata HOM05D002206 ORTHO05D002219 3.1e-47 193.4 298 43.0
AT1G72650 Arabidopsis thaliana HOM05D002206 ORTHO05D002219 4.1e-47 193.0 345 39.7
Ah.08g216740 Amaranthus hybridus HOM05D002206 ORTHO05D002219 2.3e-45 187.2 306 42.8
Carub.0002s1950 Capsella rubella HOM05D002206 ORTHO05D002219 1.1e-44 184.9 297 42.4
Sp5g27710 Schrenkiella parvula HOM05D002206 ORTHO05D002219 9.5e-44 181.8 349 40.4
C06p46970 Brassica napus HOM05D002206 ORTHO05D002219 3.6e-43 179.9 325 41.8
Thhalv10018282m.g Eutrema salsugineum HOM05D002206 ORTHO05D002219 1.0e-42 178.3 340 39.7
BolC6t39738H Brassica oleracea HOM05D002118 ORTHO05D002219 1.4e-42 177.9 324 41.4
BcaC08g46708 Brassica carinata HOM05D002206 ORTHO05D002219 4.0e-42 176.4 324 41.4
Aa31LG7G2240 Aethionema arabicum HOM05D002206 ORTHO05D002219 1.5e-41 174.5 230 47.4
Os02g0776700 Oryza sativa ssp. japonica HOM05D002206 ORTHO05D002219 1.5e-41 174.5 331 36.0
BcaB03g15681 Brassica carinata HOM05D002206 ORTHO05D002219 7.5e-41 172.2 338 37.6
A07p38810 Brassica napus HOM05D002206 ORTHO05D002219 4.9e-40 169.5 330 39.7
BraA07t31435Z Brassica rapa HOM05D002206 ORTHO05D002219 6.4e-40 169.1 326 40.2
BraA07t30651Z Brassica rapa HOM05D002206 ORTHO05D002219 5.4e-39 166.0 302 40.4
BcaC08g45698 Brassica carinata HOM05D002206 ORTHO05D002219 9.2e-39 165.2 302 39.4
BolC6t38584H Brassica oleracea HOM05D002206 ORTHO05D002219 9.2e-39 165.2 302 39.4
CDE06G2062 Ceratophyllum demersum HOM05D002206 ORTHO05D002219 9.2e-39 165.2 230 45.2
AL1G29750 Arabidopsis lyrata HOM05D002206 ORTHO05D002219 1.2e-38 164.9 273 40.7
A07p30130 Brassica napus HOM05D002206 ORTHO05D002219 1.2e-38 164.9 302 40.4
AT1G17460 Arabidopsis thaliana HOM05D002206 ORTHO05D002219 1.6e-38 164.5 229 44.5
Aa31LG4G3020 Aethionema arabicum HOM05D002206 ORTHO05D002219 2.7e-38 163.7 276 42.0
Thhalv10007199m.g Eutrema salsugineum HOM05D002206 ORTHO05D002219 3.5e-38 163.3 300 37.3
Zm00001eb256690 Zea mays HOM05D002206 ORTHO05D002219 7.8e-38 162.2 303 37.6
CARHR018060 Cardamine hirsuta HOM05D002206 ORTHO05D002219 1.5e-36 157.9 227 41.9
Sp1g15600 Schrenkiella parvula HOM05D002206 ORTHO05D002219 1.5e-36 157.9 264 41.3
CDE07G0096 Ceratophyllum demersum HOM05D002206 ORTHO05D002219 5.6e-36 156.0 230 44.3
C05p15870 Brassica napus HOM05D002206 ORTHO05D002219 1.2e-35 154.8 231 42.4
BolC5t30291H Brassica oleracea HOM05D002206 ORTHO05D002219 1.2e-35 154.8 231 42.4
C06p34820 Brassica napus HOM05D002206 ORTHO05D002219 8.0e-35 152.1 297 38.0
Carub.0001s1723 Capsella rubella HOM05D002206 ORTHO05D002219 2.3e-34 150.6 318 36.8
SEGI_30968 Sequoiadendron giganteum HOM05D002206 ORTHO05D002219 9.8e-33 145.2 285 39.3
SEGI_32999 Sequoiadendron giganteum HOM05D002206 ORTHO05D002219 3.7e-32 143.3 253 39.9
A06p13390 Brassica napus HOM05D002206 ORTHO05D002219 8.3e-32 142.1 230 39.1
BraA06t24491Z Brassica rapa HOM05D002206 ORTHO05D002219 8.3e-32 142.1 230 39.1
SEGI_01955 Sequoiadendron giganteum HOM05D002206 ORTHO05D002219 1.6e-30 137.9 310 34.5
ATR0680G183 Amborella trichopoda HOM05D002206 ORTHO05D002219 6.0e-30 136.0 238 39.9
Aqoxy7G01083 Aquilegia oxysepala HOM05D002206 ORTHO05D002219 9.5e-28 128.6 189 45.5
MELO3C024360.2 Cucumis melo HOM05D002206 ORTHO05D002219 6.2e-27 125.9 183 44.8
Nn2g11536 Nelumbo nucifera HOM05D002206 ORTHO05D002219 4.4e-25 119.8 289 31.1
MBI18_g39090_MAGBIO Magnolia biondii HOM05D002206 ORTHO05D002219 5.8e-25 119.4 274 34.3
TAR623G1051 Trochodendron aralioides HOM05D002206 ORTHO05D002219 1.7e-24 117.9 290 33.4
AUR62019496 Chenopodium quinoa HOM05D002206 ORTHO05D002219 8.3e-24 115.5 118 53.4
Nn2g13745 Nelumbo nucifera HOM05D002206 ORTHO05D002219 1.1e-23 115.2 290 33.1
Actinidia37363 Actinidia chinensis HOM05D002206 ORTHO05D002219 5.1e-21 106.3 305 32.1
Aqoxy1G01186 Aquilegia oxysepala HOM05D002206 ORTHO05D002219 7.6e-17 92.4 230 32.6
CDE05G0207 Ceratophyllum demersum HOM05D002206 ORTHO05D002219 1.7e-13 81.3 226 31.9
Eucgr.J00905 Eucalyptus grandis HOM05D002206 ORTHO05D002219 7.3e-12 75.9 246 27.2
Mapoly0008s0016 Marchantia polymorpha HOM05D002206 ORTHO05D002219 1.6e-11 74.7 231 29.4
Psat7g153640 Pisum sativum HOM05D002206 ORTHO05D002219 2.1e-11 74.3 70 54.3
QL01p021039 Quercus lobata HOM05D002206 ORTHO05D002219 2.1e-11 74.3 234 31.6
AagrBONN_evm.TU.Sc2ySwM_228.303 Anthoceros agrestis HOM05D002206 ORTHO05D002219 4.7e-11 73.2 276 30.4
CSS0004700 Camellia sinensis var. sinensis HOM05D002206 ORTHO05D002219 3.1e-10 70.5 242 27.3
GSVIVG01025226001 Vitis vinifera HOM05D002206 ORTHO05D002219 4.0e-10 70.1 212 27.4
Pp3c2_20860 Physcomitrium patens HOM05D002206 ORTHO05D002219 8.9e-10 68.9 70 48.6
BcaB05g24768 Brassica carinata HOM05D002206 ORTHO05D002219 5.8e-09 66.2 71 53.5
Pp3c1_19660 Physcomitrium patens HOM05D002206 ORTHO05D002219 3.8e-08 63.5 39 66.7
PGR119G2274 Punica granatum HOM05D002206 ORTHO05D002219 5.4e-07 59.7 348 24.4
vmacro14416 Vaccinium macrocarpon HOM05D002206 ORTHO05D002219 3.5e-06 57.0 264 25.0
Manes.11G148600 Manihot esculenta HOM05D002206 ORTHO05D002219 4.6e-06 56.6 129 30.2


User provided reference genes

Program Settings