Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005635 Camellia sinensis var. sinensis HOM05D049874 ORTHO05D112044 2.2e-127 459.1 263 100.0
CSS0024476 Camellia sinensis var. sinensis HOM05D049874 ORTHO05D109189 2.2e-127 459.1 263 100.0
Ciclev10006199m.g Citrus clementina HOM05D001754 ORTHO05D001839 2.4e-09 67.0 44 79.5
Actinidia16820 Actinidia chinensis HOM05D001754 ORTHO05D001839 1.2e-08 64.7 44 75.0
Manes.15G011500 Manihot esculenta HOM05D001754 ORTHO05D001839 2.1e-08 63.9 44 75.0
CSS0023787 Camellia sinensis var. sinensis HOM05D001754 ORTHO05D001839 3.5e-08 63.2 44 75.0
Lj5g0023537 Lotus japonicus HOM05D001754 ORTHO05D001839 3.5e-08 63.2 35 85.7
Manes.03G197000 Manihot esculenta HOM05D001754 ORTHO05D001839 3.5e-08 63.2 44 75.0
Actinidia40287 Actinidia chinensis HOM05D001754 ORTHO05D001839 1.0e-07 61.6 44 75.0
TPR.G33179 Trifolium pratense HOM05D001754 ORTHO05D001839 1.3e-07 61.2 35 82.9
TPR.G33310 Trifolium pratense HOM05D001754 ORTHO05D001839 1.3e-07 61.2 35 82.9
arahy.Tifrunner.gnm1.ann1.BDX9T5 Arachis hypogaea HOM05D001754 ORTHO05D001839 1.8e-07 60.8 44 72.7
arahy.Tifrunner.gnm1.ann1.FJS2VQ Arachis hypogaea HOM05D001754 ORTHO05D001839 1.8e-07 60.8 44 72.7
EL10Ac3g06623 Beta vulgaris HOM05D001754 ORTHO05D001839 2.3e-07 60.5 44 72.7
AUR62033034 Chenopodium quinoa HOM05D001754 ORTHO05D001839 2.3e-07 60.5 44 72.7
AUR62033036 Chenopodium quinoa HOM05D001754 ORTHO05D001839 2.3e-07 60.5 44 72.7
AUR62040756 Chenopodium quinoa HOM05D001754 ORTHO05D001839 2.3e-07 60.5 44 72.7
AUR62040757 Chenopodium quinoa HOM05D001754 ORTHO05D001839 2.3e-07 60.5 44 72.7
CSS0008356 Camellia sinensis var. sinensis HOM05D000717 ORTHO05D000555 3.0e-07 60.1 49 65.3
Glyma.19G232700 Glycine max HOM05D001754 ORTHO05D001839 3.0e-07 60.1 44 72.7
Sc08g0004500 Simmondsia chinensis HOM05D001754 ORTHO05D001839 3.0e-07 60.1 44 72.7
Sc19g0005400 Simmondsia chinensis HOM05D001754 ORTHO05D001839 3.0e-07 60.1 44 72.7
Glyma.03G235000 Glycine max HOM05D001754 ORTHO05D001839 3.9e-07 59.7 44 72.7
Sed0011598 Sechium edule HOM05D001754 ORTHO05D001839 3.9e-07 59.7 35 77.1
Sc13g0003370 Simmondsia chinensis HOM05D001754 ORTHO05D001839 5.1e-07 59.3 44 70.5
vmacro08169 Vaccinium macrocarpon HOM05D001754 ORTHO05D001839 5.1e-07 59.3 44 72.7
ClCG03G017380 Citrullus lanatus HOM05D001754 ORTHO05D001839 6.7e-07 58.9 44 70.5
MELO3C015304.2 Cucumis melo HOM05D001754 ORTHO05D001839 6.7e-07 58.9 44 70.5
CsaV3_1G038800 Cucumis sativus L. HOM05D001754 ORTHO05D001839 6.7e-07 58.9 44 70.5
Lj1g0020983 Lotus japonicus HOM05D001754 ORTHO05D001839 6.7e-07 58.9 44 72.7
Os03g0343500 Oryza sativa ssp. japonica HOM05D001754 ORTHO05D001839 6.7e-07 58.9 44 68.2
Thecc.04G286900 Theobroma cacao HOM05D001754 ORTHO05D001839 6.7e-07 58.9 44 70.5
Atru.chr4.2880 Acer truncatum HOM05D001754 ORTHO05D001839 8.7e-07 58.5 44 70.5
ClCG09G005850 Citrullus lanatus HOM05D001754 ORTHO05D001839 8.7e-07 58.5 44 70.5
MELO3C015999.2 Cucumis melo HOM05D001754 ORTHO05D001839 8.7e-07 58.5 44 70.5
CsaV3_7G029290 Cucumis sativus L. HOM05D001754 ORTHO05D001839 8.7e-07 58.5 44 70.5
Sed0016868 Sechium edule HOM05D001754 ORTHO05D001839 8.7e-07 58.5 44 70.5
Sed0019926 Sechium edule HOM05D001754 ORTHO05D001839 8.7e-07 58.5 44 70.5
MSTRG.17405 Avicennia marina HOM05D001754 ORTHO05D001839 1.1e-06 58.2 83 44.6
COL.COLO4_13838 Corchorus olitorius HOM05D001754 ORTHO05D001839 1.1e-06 58.2 32 84.4
Dinv33055 Davidia involucrata HOM05D001754 ORTHO05D001839 1.1e-06 58.2 44 70.5
Gohir.A08G076300 Gossypium hirsutum HOM05D001754 ORTHO05D001839 1.1e-06 58.2 44 70.5
Gohir.D08G085800 Gossypium hirsutum HOM05D001754 ORTHO05D001839 1.1e-06 58.2 44 70.5
Gorai.004G090300 Gossypium raimondii HOM05D001754 ORTHO05D001839 1.1e-06 58.2 44 70.5
Medtr7g112770 Medicago truncatula HOM05D001754 ORTHO05D001839 1.1e-06 58.2 44 70.5
Phvul.006G089100 Phaseolus vulgaris HOM05D001754 ORTHO05D001839 1.1e-06 58.2 44 70.5
VMungo0540G2259 Vigna mungo HOM05D001754 ORTHO05D001839 1.1e-06 58.2 44 70.5
Lalb_Chr04g0260671 Lupinus albus HOM05D001754 ORTHO05D001839 1.5e-06 57.8 32 84.4
Actinidia21499 Actinidia chinensis HOM05D001754 ORTHO05D001839 1.9e-06 57.4 44 70.5
Ah.04g153630 Amaranthus hybridus HOM05D001754 ORTHO05D001839 1.9e-06 57.4 35 77.1
arahy.Tifrunner.gnm1.ann1.3G8586 Arachis hypogaea HOM05D001754 ORTHO05D001839 2.5e-06 57.0 35 77.1
arahy.Tifrunner.gnm1.ann1.J8QFHP Arachis hypogaea HOM05D001754 ORTHO05D001839 2.5e-06 57.0 35 77.1
Cpa.g.sc9.259 Carica papaya HOM05D001754 ORTHO05D001839 2.5e-06 57.0 44 68.2
Ca_05795_v3 Cicer arietinum L. HOM05D001754 ORTHO05D001839 2.5e-06 57.0 44 68.2
Manes.10G031000 Manihot esculenta HOM05D001754 ORTHO05D001839 2.5e-06 57.0 35 77.1
Potri.002G204100 Populus trichocarpa HOM05D001754 ORTHO05D001839 2.5e-06 57.0 36 75.0
Sabra02G0155100 Salix brachista HOM05D001754 ORTHO05D001839 2.5e-06 57.0 36 75.0
VMungo0720G1954 Vigna mungo HOM05D001754 ORTHO05D001839 2.5e-06 57.0 35 77.1
GSVIVG01035141001 Vitis vinifera HOM05D001754 ORTHO05D001839 2.5e-06 57.0 44 68.2
Duzib128G1877 Durio zibethinus HOM05D001754 ORTHO05D001839 3.3e-06 56.6 44 68.2
Phvul.007G197600 Phaseolus vulgaris HOM05D001754 ORTHO05D001839 3.3e-06 56.6 34 79.4
Potri.010G012700 Populus trichocarpa HOM05D001754 ORTHO05D001839 3.3e-06 56.6 45 71.1
Rhsim04G0224400 Rhododendron simsii HOM05D001754 ORTHO05D001839 3.3e-06 56.6 44 72.7
Hund24888 Selenicereus undatus HOM05D001754 ORTHO05D001839 3.3e-06 56.6 44 68.2
GSVIVG01031130001 Vitis vinifera HOM05D001754 ORTHO05D001839 3.3e-06 56.6 44 68.2
Cfa014435 Carpinus fangiana HOM05D001754 ORTHO05D001839 4.3e-06 56.2 35 77.1
Cfa014436 Carpinus fangiana HOM05D001754 ORTHO05D001839 4.3e-06 56.2 35 77.1
CiPaw.08G095100 Carya illinoinensis HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
Dinv40332 Davidia involucrata HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
Duzib133G0005 Durio zibethinus HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
Duzib138G0026 Durio zibethinus HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
FvH4_7g11630 Fragaria vesca HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
FAN01G2749 Fragaria x ananassa HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
FAN03G2627 Fragaria x ananassa HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
FAN06G1978 Fragaria x ananassa HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
FAN06G3725 Fragaria x ananassa HOM05D001754 ORTHO05D000039 4.3e-06 56.2 44 68.2
FAN10G3003 Fragaria x ananassa HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
FAN10G3174 Fragaria x ananassa HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
Gorai.008G145000 Gossypium raimondii HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
Manes.01G219300 Manihot esculenta HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
Nn3g21499 Nelumbo nucifera HOM05D001754 ORTHO05D001839 4.3e-06 56.2 35 77.1
Prupe.2G144300 Prunus persica HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
PGR004G1532 Punica granatum HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
QL12p028437 Quercus lobata HOM05D001754 ORTHO05D001839 4.3e-06 56.2 38 71.1
RcHm_v2.0_Chr1g0350181 Rosa chinensis HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
Sabra05G0029900 Salix brachista HOM05D001754 ORTHO05D001839 4.3e-06 56.2 31 83.9
Sed0016482 Sechium edule HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
Hund20539 Selenicereus undatus HOM05D001754 ORTHO05D001839 4.3e-06 56.2 44 68.2
AT3G05560 Arabidopsis thaliana HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 65.9
Carub.0006s2477 Capsella rubella HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 65.9
CARHR186280 Cardamine hirsuta HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 65.9
Cfa005910 Carpinus fangiana HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 65.9
CDE05G2041 Ceratophyllum demersum HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 65.9
CDE05G3604 Ceratophyllum demersum HOM05D001754 ORTHO05D001839 5.6e-06 55.8 35 71.4
COL.COLO4_10530 Corchorus olitorius HOM05D001754 ORTHO05D001839 5.6e-06 55.8 35 77.1
Haze_04940 Corylus avellana HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 65.9
Haze_12893 Corylus avellana HOM05D001754 ORTHO05D001839 5.6e-06 55.8 31 83.9
Duzib177G1038 Durio zibethinus HOM05D001754 ORTHO05D001839 5.6e-06 55.8 35 74.3
Migut.D00223 Erythranthe guttata HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 65.9
Glyma.10G151200 Glycine max HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 68.2
Glyma.20G237000 Glycine max HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 68.2
Psat0s3039g0040 Pisum sativum HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 68.2
Psat0s3039g0120 Pisum sativum HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 68.2
Potri.005G024400 Populus trichocarpa HOM05D001754 ORTHO05D001839 5.6e-06 55.8 31 80.6
THA.LOC104818725 Tarenaya hassleriana HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 65.9
TWI23G0010 Tripterygium wilfordii HOM05D001754 ORTHO05D001839 5.6e-06 55.8 44 65.9
TWI36G1276 Tripterygium wilfordii HOM05D001754 ORTHO05D001839 5.6e-06 55.8 35 74.3
CANSAT54G1202 Cannabis sativa HOM05D001754 ORTHO05D001839 7.4e-06 55.5 44 68.2
CANSAT78G1423 Cannabis sativa HOM05D001754 ORTHO05D001839 7.4e-06 55.5 44 68.2
Cpa.g.sc327.7 Carica papaya HOM05D001754 ORTHO05D001839 7.4e-06 55.5 35 77.1
CiPaw.08G161400 Carya illinoinensis HOM05D001754 ORTHO05D001839 7.4e-06 55.5 35 77.1
COL.COLO4_23343 Corchorus olitorius HOM05D001754 ORTHO05D001839 7.4e-06 55.5 44 68.2
Eucgr.H04540 Eucalyptus grandis HOM05D001754 ORTHO05D001839 7.4e-06 55.5 33 78.8
Thhalv10005133m.g Eutrema salsugineum HOM05D001754 ORTHO05D001839 7.4e-06 55.5 44 65.9
FAN15G1964 Fragaria x ananassa HOM05D001754 ORTHO05D001839 7.4e-06 55.5 35 74.3
FAN20G0477 Fragaria x ananassa HOM05D001754 ORTHO05D001839 7.4e-06 55.5 35 74.3
FAN27G0016 Fragaria x ananassa HOM05D001754 ORTHO05D001839 7.4e-06 55.5 35 74.3
Gohir.A11G268600 Gossypium hirsutum HOM05D001754 ORTHO05D001839 7.4e-06 55.5 31 80.6
Gohir.A12G130200 Gossypium hirsutum HOM05D001754 ORTHO05D001839 7.4e-06 55.5 44 68.2
Gorai.007G300700 Gossypium raimondii HOM05D001754 ORTHO05D001839 7.4e-06 55.5 31 80.6
RcHm_v2.0_Chr6g0294041 Rosa chinensis HOM05D001754 ORTHO05D001839 7.4e-06 55.5 35 74.3
TAR633G1748 Trochodendron aralioides HOM05D001754 ORTHO05D001839 7.4e-06 55.5 44 68.2
Atru.chr5.1144 Acer truncatum HOM05D001754 ORTHO05D001839 9.6e-06 55.1 31 80.6
AT5G27770 Arabidopsis thaliana HOM05D001754 ORTHO05D001839 9.6e-06 55.1 44 65.9
CANSAT11G0606 Cannabis sativa HOM05D001754 ORTHO05D001839 9.6e-06 55.1 44 68.2
Gohir.D11G119500 Gossypium hirsutum HOM05D001754 ORTHO05D001839 9.6e-06 55.1 44 65.9
Gorai.007G128000 Gossypium raimondii HOM05D001754 ORTHO05D001839 9.6e-06 55.1 44 65.9
Hma1.2p1_0472F.1_g159620 Hydrangea macrophylla HOM05D001754 ORTHO05D001839 9.6e-06 55.1 44 61.4
MBI19_g26091_MAGBIO Magnolia biondii HOM05D001754 ORTHO05D001839 9.6e-06 55.1 44 68.2
MBI19_g43563_MAGBIO Magnolia biondii HOM05D001754 ORTHO05D001839 9.6e-06 55.1 44 68.2
Sabra13G0013400 Salix brachista HOM05D001754 ORTHO05D001839 9.6e-06 55.1 31 80.6
Sabra13G0017500 Salix brachista HOM05D001754 ORTHO05D001839 9.6e-06 55.1 31 80.6
THA.LOC104802793 Tarenaya hassleriana HOM05D001754 ORTHO05D001839 9.6e-06 55.1 44 65.9
Thecc.05G313900 Theobroma cacao HOM05D001754 ORTHO05D001839 9.6e-06 55.1 44 65.9
TAR365G0155 Trochodendron aralioides HOM05D001754 ORTHO05D001839 9.6e-06 55.1 44 68.2


User provided reference genes

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