Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024475 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D113139 6.5e-108 394.0 194 100.0
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.1e-51 207.2 193 60.6
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.3e-49 199.5 193 59.1
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.7e-21 106.3 60 85.0
CSS0042036 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.6e-18 97.1 58 82.8
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 1.9e-14 83.6 60 65.0
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 4.2e-14 82.4 61 65.6
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 1.7e-12 77.0 60 63.3
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 9.6e-11 71.2 61 57.4
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 1.6e-10 70.5 61 57.4
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 1.6e-10 70.5 59 61.0
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 3.6e-10 69.3 59 59.3
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 5.3e-09 65.5 74 47.3
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 9.0e-09 64.7 72 50.0
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 9.0e-09 64.7 61 55.7
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 9.0e-09 64.7 61 52.5
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 1.2e-08 64.3 61 52.5
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.2e-08 64.3 62 51.6
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 2.6e-08 63.2 58 56.9
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 3.4e-08 62.8 68 48.5
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 5.8e-08 62.0 61 54.1
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 7.6e-08 61.6 78 41.0
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 7.6e-08 61.6 60 50.0
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 7.6e-08 61.6 64 51.6
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 1.7e-07 60.5 61 50.8
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 2.2e-07 60.1 98 37.8
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 2.2e-07 60.1 58 53.4
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 2.2e-07 60.1 60 50.0
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.2e-07 60.1 60 48.3
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 2.2e-07 60.1 60 55.0
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 6.4e-07 58.5 61 45.9
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 6.4e-07 58.5 60 48.3
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 1.1e-06 57.8 81 39.5
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 1.1e-06 57.8 59 52.5
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 1.1e-06 57.8 70 51.4
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 1.1e-06 57.8 63 47.6
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 1.1e-06 57.8 59 55.9
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 1.1e-06 57.8 59 50.8
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 1.4e-06 57.4 61 49.2
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 1.9e-06 57.0 58 50.0
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 1.9e-06 57.0 58 51.7
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 2.4e-06 56.6 61 50.8
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 2.4e-06 56.6 57 52.6
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 3.2e-06 56.2 67 53.7
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 4.2e-06 55.8 29 86.2
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 4.2e-06 55.8 58 50.0
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 4.2e-06 55.8 58 51.7
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 4.2e-06 55.8 58 51.7
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 5.4e-06 55.5 67 52.2
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 7.1e-06 55.1 59 47.5
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 7.1e-06 55.1 61 41.0
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 7.1e-06 55.1 59 52.5
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 9.3e-06 54.7 61 50.8
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 9.3e-06 54.7 56 51.8


User provided reference genes

Program Settings