Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024470 Camellia sinensis var. sinensis HOM05D012088 ORTHO05D014145 8.4e-45 183.3 94 100.0
CSS0034897 Camellia sinensis var. sinensis HOM05D012088 ORTHO05D014145 3.8e-13 78.2 52 78.8
CSS0007838 Camellia sinensis var. sinensis HOM05D012088 ORTHO05D014145 6.5e-13 77.4 55 78.2
CSS0037793 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 8.5e-13 77.0 64 70.3
CSS0018520 Camellia sinensis var. sinensis HOM05D012088 ORTHO05D014145 4.2e-12 74.7 55 74.5
CSS0024000 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 9.4e-12 73.6 53 79.2
CSS0002516 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D014145 2.7e-11 72.0 53 77.4
CSS0000457 Camellia sinensis var. sinensis HOM05D012088 ORTHO05D014145 1.0e-10 70.1 53 77.4
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.8e-10 69.3 56 73.2
CSS0029324 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 1.5e-09 66.2 64 62.5
CSS0012027 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D014145 4.3e-09 64.7 58 69.0
RcHm_v2.0_Chr2g0099941 Rosa chinensis HOM05D002906 ORTHO05D003211 1.8e-07 59.3 43 72.1
Psat0s765g0200 Pisum sativum HOM05D002906 ORTHO05D003211 2.4e-07 58.9 43 74.4
CSS0010447 Camellia sinensis var. sinensis HOM05D000740 ORTHO05D014145 4.1e-07 58.2 45 75.6
CSS0004530 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D014145 5.3e-07 57.8 54 57.4
MD15G1249300 Malus domestica HOM05D002906 ORTHO05D003211 5.3e-07 57.8 43 69.8
Aa31LG8G15270 Aethionema arabicum HOM05D002906 ORTHO05D003211 6.9e-07 57.4 43 74.4
BcaC04g22930 Brassica carinata HOM05D002906 ORTHO05D003211 6.9e-07 57.4 43 72.1
BraA09t36816Z Brassica rapa HOM05D002906 ORTHO05D003211 6.9e-07 57.4 43 72.1
BcaB02g10717 Brassica carinata HOM05D002906 ORTHO05D003211 1.5e-06 56.2 43 72.1
BcaNung00749 Brassica carinata HOM05D002906 ORTHO05D003211 1.5e-06 56.2 43 72.1
Eucgr.J02394 Eucalyptus grandis HOM05D002906 ORTHO05D003211 1.5e-06 56.2 43 69.8
Manes.01G142700 Manihot esculenta HOM05D002906 ORTHO05D003211 1.5e-06 56.2 43 69.8
Manes.02G101100 Manihot esculenta HOM05D002906 ORTHO05D003211 1.5e-06 56.2 43 69.8
Potri.007G016100 Populus trichocarpa HOM05D002906 ORTHO05D003211 1.5e-06 56.2 43 67.4
AL3G51270 Arabidopsis lyrata HOM05D002906 ORTHO05D003211 2.0e-06 55.8 43 69.8
AL7G14840 Arabidopsis lyrata HOM05D002906 ORTHO05D003211 2.0e-06 55.8 43 69.8
Sp3g31530 Schrenkiella parvula HOM05D002906 ORTHO05D003211 2.0e-06 55.8 43 69.8
AT4G36210 Arabidopsis thaliana HOM05D002906 ORTHO05D003211 3.4e-06 55.1 43 67.4
CSS0001139 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D112888 3.4e-06 55.1 36 77.8
Glyma.11G074300 Glycine max HOM05D002906 ORTHO05D003211 3.4e-06 55.1 43 69.8
arahy.Tifrunner.gnm1.ann1.A2FF76 Arachis hypogaea HOM05D002906 ORTHO05D003211 4.5e-06 54.7 43 67.4
arahy.Tifrunner.gnm1.ann1.K7AB56 Arachis hypogaea HOM05D002906 ORTHO05D003211 4.5e-06 54.7 43 67.4
Carub.0003s3223 Capsella rubella HOM05D002906 ORTHO05D003211 4.5e-06 54.7 43 67.4
Ciclev10025097m.g Citrus clementina HOM05D002906 ORTHO05D003211 4.5e-06 54.7 43 67.4
COL.COLO4_21964 Corchorus olitorius HOM05D002906 ORTHO05D003211 4.5e-06 54.7 43 67.4
Dinv40056 Davidia involucrata HOM05D002906 ORTHO05D003211 4.5e-06 54.7 43 67.4
Migut.L00037 Erythranthe guttata HOM05D002906 ORTHO05D003211 4.5e-06 54.7 43 65.1
Medtr3g113090 Medicago truncatula HOM05D002906 ORTHO05D003211 4.5e-06 54.7 43 67.4
PGR102G3213 Punica granatum HOM05D002906 ORTHO05D003211 4.5e-06 54.7 43 67.4
TPR.G31196 Trifolium pratense HOM05D002906 ORTHO05D003211 4.5e-06 54.7 43 67.4
ClCG07G008870 Citrullus lanatus HOM05D002906 ORTHO05D003211 7.7e-06 53.9 43 65.1
MELO3C017538.2 Cucumis melo HOM05D002906 ORTHO05D003211 7.7e-06 53.9 43 65.1
CsaV3_4G005320 Cucumis sativus L. HOM05D002906 ORTHO05D003211 7.7e-06 53.9 43 65.1
Sed0023539 Sechium edule HOM05D002906 ORTHO05D003211 7.7e-06 53.9 43 65.1
GSVIVG01018828001 Vitis vinifera HOM05D002906 ORTHO05D003211 7.7e-06 53.9 43 65.1


User provided reference genes

Program Settings