Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024463 Camellia sinensis var. sinensis HOM05D020675 ORTHO05D000042 1.6e-82 309.3 152 100.0
CSS0027113 Camellia sinensis var. sinensis HOM05D020675 ORTHO05D000042 6.2e-74 280.8 153 92.2
CSS0046213 Camellia sinensis var. sinensis HOM05D020675 ORTHO05D000042 6.3e-66 254.2 153 83.7
CSS0027443 Camellia sinensis var. sinensis HOM05D020675 ORTHO05D000042 1.2e-64 250.0 148 83.8
CSS0037593 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 3.4e-64 248.4 186 70.4
CSS0010565 Camellia sinensis var. sinensis HOM05D020675 ORTHO05D000042 7.6e-64 247.3 153 83.7
CSS0024218 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 3.8e-63 245.0 190 70.0
CSS0018501 Camellia sinensis var. sinensis HOM05D020675 ORTHO05D000042 1.4e-62 243.0 149 81.9
RhsimUnG0018200 Rhododendron simsii HOM05D000092 ORTHO05D000042 1.7e-34 149.8 188 45.7
Rhsim04G0054300 Rhododendron simsii HOM05D000092 ORTHO05D000042 4.5e-32 141.7 186 46.8
Rhsim04G0055200 Rhododendron simsii HOM05D000092 ORTHO05D000042 2.5e-30 136.0 185 44.3
Rhsim04G0053600 Rhododendron simsii HOM05D000092 ORTHO05D000042 3.2e-30 135.6 185 44.3
Rhsim04G0054600 Rhododendron simsii HOM05D000092 ORTHO05D000042 4.2e-30 135.2 185 44.3
Rhsim04G0054000 Rhododendron simsii HOM05D000092 ORTHO05D000042 1.0e-28 130.6 166 45.8
Rhsim04G0053900 Rhododendron simsii HOM05D000092 ORTHO05D000042 2.0e-27 126.3 186 43.0
Rhsim04G0055600 Rhododendron simsii HOM05D000092 ORTHO05D000042 2.0e-27 126.3 187 43.9
vmacro09349 Vaccinium macrocarpon HOM05D000092 ORTHO05D000042 2.0e-24 116.3 189 39.7
Dinv01598 Davidia involucrata HOM05D000092 ORTHO05D000042 8.5e-23 110.9 177 36.2
Dinv40988 Davidia involucrata HOM05D000092 ORTHO05D000042 8.8e-20 100.9 171 35.1
Dinv03248 Davidia involucrata HOM05D000092 ORTHO05D000042 3.4e-19 99.0 183 32.2
Dinv03240 Davidia involucrata HOM05D000092 ORTHO05D000042 4.4e-19 98.6 182 33.5
Dinv05244 Davidia involucrata HOM05D000092 ORTHO05D000042 5.7e-19 98.2 178 32.6
Dinv03237 Davidia involucrata HOM05D000092 ORTHO05D000042 1.3e-18 97.1 182 33.0
Dinv05255 Davidia involucrata HOM05D000092 ORTHO05D000042 1.3e-18 97.1 181 30.9
Dinv05441 Davidia involucrata HOM05D000092 ORTHO05D000042 1.3e-18 97.1 161 33.5
Dinv03242 Davidia involucrata HOM05D000092 ORTHO05D000042 3.7e-18 95.5 161 33.5
Dinv03245 Davidia involucrata HOM05D000092 ORTHO05D000042 8.3e-18 94.4 186 30.6
Dinv18880 Davidia involucrata HOM05D000092 ORTHO05D000042 7.3e-14 81.3 133 33.8
Dinv20556 Davidia involucrata HOM05D000092 ORTHO05D000042 7.3e-14 81.3 170 30.6
Dinv20740 Davidia involucrata HOM05D000092 ORTHO05D000042 7.3e-14 81.3 170 30.6
Dinv20558 Davidia involucrata HOM05D000092 ORTHO05D000042 1.2e-11 73.9 168 31.0
Dinv20738 Davidia involucrata HOM05D000092 ORTHO05D000042 1.2e-11 73.9 168 31.0
Dinv04828 Davidia involucrata HOM05D000092 ORTHO05D000042 2.9e-10 69.3 171 29.8
Dinv12837 Davidia involucrata HOM05D000092 ORTHO05D000042 3.7e-10 68.9 162 34.0
Dinv03246 Davidia involucrata HOM05D000092 ORTHO05D000042 6.4e-10 68.2 162 30.9
Dinv12839 Davidia involucrata HOM05D000092 ORTHO05D000042 8.3e-10 67.8 113 37.2
Manes.02G215425 Manihot esculenta HOM05D000092 ORTHO05D000042 1.1e-09 67.4 99 38.4
Thecc.05G211400 Theobroma cacao HOM05D000092 ORTHO05D000042 1.4e-09 67.0 73 43.8
Dinv40446 Davidia involucrata HOM05D000092 ORTHO05D000042 2.4e-09 66.2 73 43.8
Manes.02G215000 Manihot esculenta HOM05D000092 ORTHO05D000042 3.2e-09 65.9 99 38.4
Manes.02G215120 Manihot esculenta HOM05D000092 ORTHO05D000042 3.2e-09 65.9 99 37.4
Manes.02G215445 Manihot esculenta HOM05D000092 ORTHO05D000042 3.2e-09 65.9 99 37.4
Manes.02G215615 Manihot esculenta HOM05D000092 ORTHO05D000042 3.2e-09 65.9 99 37.4
Dinv07585 Davidia involucrata HOM05D000092 ORTHO05D000042 4.1e-09 65.5 99 41.4
Manes.02G215405 Manihot esculenta HOM05D000092 ORTHO05D000042 4.1e-09 65.5 99 36.4
Dinv07579 Davidia involucrata HOM05D000092 ORTHO05D000042 5.4e-09 65.1 89 41.6
COL.COLO4_32833 Corchorus olitorius HOM05D000092 ORTHO05D000042 7.0e-09 64.7 76 42.1
Manes.02G215325 Manihot esculenta HOM05D000092 ORTHO05D000042 7.0e-09 64.7 99 36.4
Manes.02G215400 Manihot esculenta HOM05D000092 ORTHO05D000042 7.0e-09 64.7 99 37.4
Manes.02G215420 Manihot esculenta HOM05D000092 ORTHO05D000042 7.0e-09 64.7 99 37.4
Manes.02G215430 Manihot esculenta HOM05D000092 ORTHO05D000042 7.0e-09 64.7 99 37.4
Manes.02G215700 Manihot esculenta HOM05D000092 ORTHO05D000042 7.0e-09 64.7 99 36.4
Manes.07G062324 Manihot esculenta HOM05D000092 ORTHO05D000042 7.0e-09 64.7 99 36.4
Potri.005G061860 Populus trichocarpa HOM05D000092 ORTHO05D000042 7.0e-09 64.7 73 42.5
Dinv12835 Davidia involucrata HOM05D000092 ORTHO05D000042 1.2e-08 63.9 77 44.2
Manes.07G060708 Manihot esculenta HOM05D000092 ORTHO05D000042 1.2e-08 63.9 92 39.1
Manes.07G062340 Manihot esculenta HOM05D000092 ORTHO05D000042 1.2e-08 63.9 92 38.0
Manes.07G062404 Manihot esculenta HOM05D000092 ORTHO05D000042 1.2e-08 63.9 92 38.0
Dinv07581 Davidia involucrata HOM05D000092 ORTHO05D000042 1.6e-08 63.5 77 46.8
Manes.07G062308 Manihot esculenta HOM05D000092 ORTHO05D000042 1.6e-08 63.5 92 39.1
VMungo0331G0195 Vigna mungo HOM05D000092 ORTHO05D000042 1.6e-08 63.5 82 36.6
Manes.07G062348 Manihot esculenta HOM05D000092 ORTHO05D000042 2.0e-08 63.2 92 38.0
Glyma.07G065000 Glycine max HOM05D000092 ORTHO05D000042 2.7e-08 62.8 68 41.2
Manes.07G063100 Manihot esculenta HOM05D000092 ORTHO05D000042 2.7e-08 62.8 92 38.0
Sabra13G0028000 Salix brachista HOM05D000092 ORTHO05D000042 2.7e-08 62.8 101 36.6
Manes.07G061980 Manihot esculenta HOM05D000092 ORTHO05D000042 3.5e-08 62.4 92 37.0
Eucgr.L00094 Eucalyptus grandis HOM05D000092 ORTHO05D000042 4.6e-08 62.0 107 32.7
Lalb_Chr01g0006961 Lupinus albus HOM05D000092 ORTHO05D000042 4.6e-08 62.0 116 33.6
Manes.07G061500 Manihot esculenta HOM05D000092 ORTHO05D000042 5.9e-08 61.6 92 37.0
Potri.005G042400 Populus trichocarpa HOM05D000092 ORTHO05D000042 5.9e-08 61.6 94 39.4
VMungo0331G0485 Vigna mungo HOM05D000092 ORTHO05D000042 5.9e-08 61.6 89 33.7
Dinv18646 Davidia involucrata HOM05D000092 ORTHO05D000042 7.8e-08 61.2 100 35.0
Dinv26261 Davidia involucrata HOM05D000092 ORTHO05D000042 7.8e-08 61.2 100 35.0
Manes.07G060700 Manihot esculenta HOM05D000092 ORTHO05D000042 7.8e-08 61.2 80 36.2
Manes.07G060300 Manihot esculenta HOM05D000092 ORTHO05D000042 1.0e-07 60.8 71 42.3
Potri.013G015900 Populus trichocarpa HOM05D000092 ORTHO05D000042 1.0e-07 60.8 103 36.9
PGR042G3726 Punica granatum HOM05D000092 ORTHO05D000042 1.0e-07 60.8 72 40.3
Glyma.U031414 Glycine max HOM05D000092 ORTHO05D000042 1.3e-07 60.5 151 30.5
Gorai.011G294500 Gossypium raimondii HOM05D000092 ORTHO05D000042 1.3e-07 60.5 117 30.8
QL03p003203 Quercus lobata HOM05D000092 ORTHO05D000042 1.3e-07 60.5 75 38.7
Eucgr.L00073 Eucalyptus grandis HOM05D000092 ORTHO05D000042 1.7e-07 60.1 109 31.2
arahy.Tifrunner.gnm1.ann1.TXZ93S Arachis hypogaea HOM05D000092 ORTHO05D000042 2.3e-07 59.7 96 35.4
Dinv02874 Davidia involucrata HOM05D000092 ORTHO05D000042 2.3e-07 59.7 72 38.9
Lj1g0024619 Lotus japonicus HOM05D000092 ORTHO05D000042 2.3e-07 59.7 99 32.3
PGR042G0832 Punica granatum HOM05D000092 ORTHO05D000042 2.3e-07 59.7 107 32.7
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 2.3e-07 59.7 76 44.7
GSVIVG01023548001 Vitis vinifera HOM05D000092 ORTHO05D000042 2.3e-07 59.7 63 47.6
COL.COLO4_20151 Corchorus olitorius HOM05D000092 ORTHO05D000042 3.0e-07 59.3 81 37.0
Phvul.010G104500 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 3.0e-07 59.3 85 35.3
Potri.013G015700 Populus trichocarpa HOM05D000092 ORTHO05D000042 3.0e-07 59.3 98 37.8
QL03p001771 Quercus lobata HOM05D000092 ORTHO05D000042 3.0e-07 59.3 97 35.1
VMungo0331G0510 Vigna mungo HOM05D000092 ORTHO05D000042 3.0e-07 59.3 72 38.9
Duzib128G0093 Durio zibethinus HOM05D000092 ORTHO05D000042 3.9e-07 58.9 90 37.8
Duzib192G0626 Durio zibethinus HOM05D000092 ORTHO05D000042 3.9e-07 58.9 98 35.7
QL03p002643 Quercus lobata HOM05D000092 ORTHO05D000042 3.9e-07 58.9 94 35.1
Sabra13G0013900 Salix brachista HOM05D000092 ORTHO05D000042 3.9e-07 58.9 76 43.4
VMungo0166G0001 Vigna mungo HOM05D000092 ORTHO05D000042 3.9e-07 58.9 66 40.9
VMungo0331G1995 Vigna mungo HOM05D000092 ORTHO05D000042 3.9e-07 58.9 141 27.7
Actinidia38186 Actinidia chinensis HOM05D000092 ORTHO05D000042 5.0e-07 58.5 90 36.7
CiPaw.15G126100 Carya illinoinensis HOM05D000092 ORTHO05D000042 5.0e-07 58.5 81 33.3
Ca_27735_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 5.0e-07 58.5 71 39.4
Duzib177G0159 Durio zibethinus HOM05D000092 ORTHO05D000042 5.0e-07 58.5 89 40.4
Glyma.07G065600 Glycine max HOM05D000092 ORTHO05D000042 5.0e-07 58.5 68 38.2
Glyma.U031914 Glycine max HOM05D000092 ORTHO05D000042 5.0e-07 58.5 68 42.6
GSVIVG01023566001 Vitis vinifera HOM05D000092 ORTHO05D000042 5.0e-07 58.5 63 47.6
Actinidia38183 Actinidia chinensis HOM05D000092 ORTHO05D000042 6.6e-07 58.2 141 29.1
arahy.Tifrunner.gnm1.ann1.BPD95K Arachis hypogaea HOM05D000092 ORTHO05D000042 6.6e-07 58.2 96 35.4
Dinv36125 Davidia involucrata HOM05D000092 ORTHO05D000042 6.6e-07 58.2 68 41.2
Medtr0006s0080 Medicago truncatula HOM05D000092 ORTHO05D000042 6.6e-07 58.2 148 27.0
Potri.013G027300 Populus trichocarpa HOM05D000092 ORTHO05D000042 6.6e-07 58.2 71 43.7
Thecc.05G297500 Theobroma cacao HOM05D000092 ORTHO05D000042 6.6e-07 58.2 94 30.9
QL03p002023 Quercus lobata HOM05D000092 ORTHO05D000042 8.6e-07 57.8 72 40.3
QL03p002457 Quercus lobata HOM05D000092 ORTHO05D000042 8.6e-07 57.8 66 39.4
Sabra13G0015000 Salix brachista HOM05D000092 ORTHO05D000042 8.6e-07 57.8 76 43.4
Sabra13G0019200 Salix brachista HOM05D000092 ORTHO05D000042 8.6e-07 57.8 76 43.4
Duzib177G0490 Durio zibethinus HOM05D000092 ORTHO05D000042 1.1e-06 57.4 89 38.2
Duzib192G0564 Durio zibethinus HOM05D000092 ORTHO05D000042 1.1e-06 57.4 94 36.2
Manes.07G062356 Manihot esculenta HOM05D000092 ORTHO05D000042 1.1e-06 57.4 92 35.9
Phvul.008G071966 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 1.1e-06 57.4 88 33.0
Potri.005G062130 Populus trichocarpa HOM05D000092 ORTHO05D000042 1.1e-06 57.4 154 27.9
QL10p064757 Quercus lobata HOM05D000092 ORTHO05D000042 1.1e-06 57.4 67 43.3
Sabra13G0018000 Salix brachista HOM05D000092 ORTHO05D000042 1.1e-06 57.4 119 33.6
GSVIVG01036191001 Vitis vinifera HOM05D000092 ORTHO05D000042 1.1e-06 57.4 73 42.5
Duzib177G0387 Durio zibethinus HOM05D000092 ORTHO05D000042 1.5e-06 57.0 89 38.2
Eucgr.G00878 Eucalyptus grandis HOM05D000092 ORTHO05D000042 1.5e-06 57.0 70 44.3
QL01p042119 Quercus lobata HOM05D000092 ORTHO05D000042 1.5e-06 57.0 94 34.0
QL03p001366 Quercus lobata HOM05D000092 ORTHO05D000042 1.5e-06 57.0 73 42.5
Thecc.05G224600 Theobroma cacao HOM05D000092 ORTHO05D000042 1.5e-06 57.0 73 38.4
Dinv05438 Davidia involucrata HOM05D000092 ORTHO05D000042 1.9e-06 56.6 95 37.9
Glyma.07G063300 Glycine max HOM05D000092 ORTHO05D000042 1.9e-06 56.6 68 39.7
Glyma.07G065500 Glycine max HOM05D000092 ORTHO05D000042 1.9e-06 56.6 68 39.7
Gorai.011G264500 Gossypium raimondii HOM05D000092 ORTHO05D000042 1.9e-06 56.6 97 29.9
Medtr1g036800 Medicago truncatula HOM05D000092 ORTHO05D000042 1.9e-06 56.6 148 27.0
arahy.Tifrunner.gnm1.ann1.H49T8T Arachis hypogaea HOM05D000092 ORTHO05D000042 2.5e-06 56.2 75 37.3
CiPaw.08G175500 Carya illinoinensis HOM05D000092 ORTHO05D000042 2.5e-06 56.2 67 37.3
Dinv10937 Davidia involucrata HOM05D000092 ORTHO05D000042 2.5e-06 56.2 79 38.0
Eucgr.G00886 Eucalyptus grandis HOM05D000092 ORTHO05D000042 2.5e-06 56.2 81 34.6
Eucgr.G01355 Eucalyptus grandis HOM05D000092 ORTHO05D000042 2.5e-06 56.2 67 46.3
Glyma.06G256300 Glycine max HOM05D000092 ORTHO05D000042 2.5e-06 56.2 116 33.6
Medtr0068s0080 Medicago truncatula HOM05D000092 ORTHO05D000042 2.5e-06 56.2 149 28.9
Medtr7g088640 Medicago truncatula HOM05D000092 ORTHO05D000042 2.5e-06 56.2 73 37.0
Psat5g221920 Pisum sativum HOM05D000092 ORTHO05D000042 2.5e-06 56.2 80 41.2
Potri.005G041101 Populus trichocarpa HOM05D000092 ORTHO05D000042 2.5e-06 56.2 76 40.8
Potri.005G042900 Populus trichocarpa HOM05D000092 ORTHO05D000042 2.5e-06 56.2 76 39.5
Dinv22271 Davidia involucrata HOM05D000092 ORTHO05D000042 3.3e-06 55.8 93 34.4
Duzib177G0893 Durio zibethinus HOM05D000092 ORTHO05D000042 3.3e-06 55.8 76 40.8
Duzib177G0994 Durio zibethinus HOM05D000092 ORTHO05D000042 3.3e-06 55.8 89 39.3
Gohir.D10G230800 Gossypium hirsutum HOM05D000092 ORTHO05D000042 3.3e-06 55.8 97 28.9
Manes.08G163511 Manihot esculenta HOM05D000092 ORTHO05D000042 3.3e-06 55.8 72 37.5
QL03p001996 Quercus lobata HOM05D000092 ORTHO05D000042 3.3e-06 55.8 67 43.3
Thecc.05G318100 Theobroma cacao HOM05D000467 ORTHO05D000379 3.3e-06 55.8 98 32.7
VMungo0331G0948 Vigna mungo HOM05D000092 ORTHO05D000042 3.3e-06 55.8 69 37.7
VMungo0331G1299 Vigna mungo HOM05D000092 ORTHO05D000042 3.3e-06 55.8 87 35.6
Manes.07G060750 Manihot esculenta HOM05D000092 ORTHO05D000042 4.3e-06 55.5 67 40.3
Manes.07G062700 Manihot esculenta HOM05D000092 ORTHO05D000042 4.3e-06 55.5 67 40.3
Manes.10G028600 Manihot esculenta HOM05D000092 ORTHO05D000042 4.3e-06 55.5 67 37.3
Phvul.008G070800 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 4.3e-06 55.5 78 33.3
QL01p042065 Quercus lobata HOM05D000092 ORTHO05D000042 4.3e-06 55.5 94 33.0
QL10p064739 Quercus lobata HOM05D000092 ORTHO05D000042 4.3e-06 55.5 73 42.5
Sabra13G0014100 Salix brachista HOM05D000092 ORTHO05D000042 4.3e-06 55.5 76 40.8
Sabra13G0019600 Salix brachista HOM05D000092 ORTHO05D000042 4.3e-06 55.5 71 45.1
Cpa.g.sc504.1 Carica papaya HOM05D000092 ORTHO05D000042 5.6e-06 55.1 74 41.9
Manes.07G060866 Manihot esculenta HOM05D000092 ORTHO05D000042 5.6e-06 55.1 102 32.4
Sabra13G0018500 Salix brachista HOM05D000092 ORTHO05D000042 5.6e-06 55.1 66 43.9
Thecc.05G318300 Theobroma cacao HOM05D000092 ORTHO05D000042 5.6e-06 55.1 79 36.7
TPR.G15276 Trifolium pratense HOM05D000092 ORTHO05D000042 5.6e-06 55.1 66 37.9
Atru.chr2.1458 Acer truncatum HOM05D000092 ORTHO05D000042 7.3e-06 54.7 86 38.4
Glyma.07G062900 Glycine max HOM05D000092 ORTHO05D000042 7.3e-06 54.7 150 27.3
Manes.10G028400 Manihot esculenta HOM05D000092 ORTHO05D000042 7.3e-06 54.7 97 36.1
Manes.10G028501 Manihot esculenta HOM05D000092 ORTHO05D000042 7.3e-06 54.7 67 37.3
Potri.019G036875 Populus trichocarpa HOM05D000092 ORTHO05D000042 7.3e-06 54.7 67 38.8
Sabra13G0015300 Salix brachista HOM05D000092 ORTHO05D000042 7.3e-06 54.7 71 45.1
Sabra13G0018700 Salix brachista HOM05D000092 ORTHO05D000042 7.3e-06 54.7 76 42.1
arahy.Tifrunner.gnm1.ann1.690WBQ Arachis hypogaea HOM05D000092 ORTHO05D000042 9.5e-06 54.3 83 32.5
Glyma.18G226500 Glycine max HOM05D000092 ORTHO05D000042 9.5e-06 54.3 79 36.7
Glyma.18G226850 Glycine max HOM05D000092 ORTHO05D000042 9.5e-06 54.3 100 30.0
Medtr0069s0080 Medicago truncatula HOM05D000092 ORTHO05D000042 9.5e-06 54.3 131 30.5
Phvul.010G091100 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 9.5e-06 54.3 71 36.6
Psat6g104440 Pisum sativum HOM05D000092 ORTHO05D000042 9.5e-06 54.3 70 35.7
PGR042G1821 Punica granatum HOM05D000092 ORTHO05D000042 9.5e-06 54.3 68 44.1
Sabra13G0013800 Salix brachista HOM05D000092 ORTHO05D000042 9.5e-06 54.3 71 42.3
Thecc.05G225500 Theobroma cacao HOM05D000092 ORTHO05D000042 9.5e-06 54.3 78 37.2
TPR.G40322 Trifolium pratense HOM05D000092 ORTHO05D000042 9.5e-06 54.3 72 33.3
GSVIVG01022044001 Vitis vinifera HOM05D000092 ORTHO05D000042 9.5e-06 54.3 102 34.3


User provided reference genes

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