Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.8e-140 501.1 249 100.0
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.8e-101 370.5 208 90.4
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.1e-91 338.6 225 79.1
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.3e-88 328.6 218 80.3
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.1e-87 326.2 218 79.8
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 4.5e-45 185.7 215 56.3
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 7.6e-45 184.9 225 54.7
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 6.9e-38 161.8 147 63.9
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.9e-35 153.7 210 50.5
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 3.0e-33 146.4 141 61.7
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 6.7e-33 145.2 166 57.8
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.9e-32 143.7 182 51.6
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 2.5e-32 143.3 216 48.1
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 3.3e-32 142.9 128 64.8
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 4.3e-32 142.5 126 61.1
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.3e-32 142.5 187 47.6
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.3e-32 142.5 184 49.5
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 4.3e-32 142.5 119 67.2
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 7.4e-32 141.7 182 51.1
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 7.4e-32 141.7 151 55.6
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 9.7e-32 141.4 176 51.1
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.3e-31 141.0 187 47.1
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.3e-31 141.0 187 47.1
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.8e-31 139.8 165 53.3
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 2.8e-31 139.8 165 53.3
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.7e-31 139.4 175 49.7
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 8.2e-31 138.3 186 46.2
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 1.4e-30 137.5 137 57.7
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 2.4e-30 136.7 173 50.3
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 2.4e-30 136.7 133 59.4
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 2.4e-30 136.7 159 53.5
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 2.4e-30 136.7 175 49.7
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 2.4e-30 136.7 177 50.8
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 3.1e-30 136.3 140 55.7
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 5.3e-30 135.6 217 44.2
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 6.9e-30 135.2 133 60.2
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 6.9e-30 135.2 178 48.9
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 9.1e-30 134.8 140 55.0
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 9.1e-30 134.8 191 47.6
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 9.1e-30 134.8 94 75.5
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 9.1e-30 134.8 178 48.9
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 1.2e-29 134.4 194 49.0
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.2e-29 134.4 172 50.0
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 1.2e-29 134.4 193 45.1
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.2e-29 134.4 161 51.6
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.2e-29 134.4 208 43.8
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 1.5e-29 134.0 140 52.9
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 1.5e-29 134.0 198 44.9
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 1.5e-29 134.0 131 58.8
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 2.0e-29 133.7 189 46.0
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 2.0e-29 133.7 186 45.7
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 2.0e-29 133.7 132 60.6
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 2.0e-29 133.7 165 50.3
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 2.0e-29 133.7 186 45.7
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 2.6e-29 133.3 184 46.2
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 2.6e-29 133.3 114 64.0
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.6e-29 133.3 149 54.4
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.6e-29 133.3 187 47.6
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 3.4e-29 132.9 190 46.3
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 3.4e-29 132.9 167 49.1
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 3.4e-29 132.9 167 49.1
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 3.4e-29 132.9 189 48.7
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 5.9e-29 132.1 122 61.5
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 5.9e-29 132.1 122 61.5
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 5.9e-29 132.1 169 52.1
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 7.7e-29 131.7 122 59.0
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 7.7e-29 131.7 122 59.0
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.0e-28 131.3 170 47.1
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.0e-28 131.3 127 59.1
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.0e-28 131.3 126 59.5
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 1.0e-28 131.3 132 59.1
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.0e-28 131.3 176 51.1
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 1.0e-28 131.3 126 59.5
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.3e-28 131.0 183 45.9
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 1.3e-28 131.0 183 45.9
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.7e-28 130.6 140 53.6
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.7e-28 130.6 132 58.3
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 2.2e-28 130.2 86 74.4
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 2.2e-28 130.2 176 48.3
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 2.9e-28 129.8 184 45.7
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 2.9e-28 129.8 122 58.2
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.9e-28 129.8 176 50.6
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 2.9e-28 129.8 191 45.0
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.9e-28 129.8 183 45.4
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 3.8e-28 129.4 125 59.2
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 3.8e-28 129.4 119 63.0
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 3.8e-28 129.4 180 47.8
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 5.0e-28 129.0 187 46.5
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 5.0e-28 129.0 176 46.0
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 5.0e-28 129.0 176 46.0
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 5.0e-28 129.0 137 53.3
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 5.0e-28 129.0 122 58.2
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 6.5e-28 128.6 122 59.0
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 6.5e-28 128.6 187 46.5
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 6.5e-28 128.6 183 45.4
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 6.5e-28 128.6 172 49.4
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 6.5e-28 128.6 97 69.1
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 8.5e-28 128.3 175 51.4
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 8.5e-28 128.3 122 56.6
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.1e-27 127.9 185 42.2
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 1.1e-27 127.9 133 54.1
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.1e-27 127.9 186 45.2
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 2.5e-27 126.7 132 57.6
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 2.5e-27 126.7 122 60.7
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 3.2e-27 126.3 122 59.0
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.2e-27 126.3 189 42.9
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 4.2e-27 125.9 107 60.7
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 4.2e-27 125.9 133 54.9
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.2e-27 125.9 171 45.0
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 4.2e-27 125.9 190 45.3
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 5.5e-27 125.6 125 54.4
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 5.5e-27 125.6 84 79.8
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 5.5e-27 125.6 184 44.0
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 7.2e-27 125.2 125 53.6
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 9.4e-27 124.8 163 46.6
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.2e-26 124.4 122 57.4
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.2e-26 124.4 122 57.4
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 3.6e-26 122.9 103 63.1
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 4.7e-26 122.5 146 47.3
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 4.7e-26 122.5 126 54.8
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 7.9e-26 121.7 105 61.9
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 7.9e-26 121.7 145 49.7
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 1.4e-25 120.9 208 42.3
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.8e-25 120.6 122 54.9
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 3.0e-25 119.8 202 42.6
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.4e-24 115.9 147 49.0
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 4.4e-24 115.9 160 46.9
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 5.7e-24 115.5 118 57.6
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 4.8e-23 112.5 201 38.8
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 5.3e-22 109.0 118 55.9
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 5.3e-22 109.0 116 53.4
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.2e-21 107.8 92 62.0
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 3.4e-21 106.3 101 59.4
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 5.9e-21 105.5 104 59.6
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 5.9e-21 105.5 102 58.8
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 7.7e-21 105.1 133 48.9
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.0e-20 104.8 107 54.2
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.3e-20 104.4 87 58.6
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 2.9e-20 103.2 133 44.4
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 2.9e-20 103.2 135 46.7
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 3.8e-20 102.8 92 60.9
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 6.5e-20 102.1 101 58.4
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 8.5e-20 101.7 92 58.7
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 2.5e-19 100.1 101 57.4
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 2.5e-19 100.1 101 57.4
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 1.6e-18 97.4 140 42.9
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 2.1e-18 97.1 101 54.5
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 3.3e-16 89.7 104 43.3
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 2.2e-15 87.0 70 64.3
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 4.8e-15 85.9 108 44.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.6e-13 80.1 82 47.6
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 1.9e-11 73.9 51 78.4
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.0e-10 68.6 183 31.7
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 4.0e-09 66.2 89 46.1
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.2e-08 64.7 76 40.8
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 2.0e-08 63.9 69 52.2
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 2.6e-08 63.5 34 85.3
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 1.3e-07 61.2 87 40.2
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 3.7e-07 59.7 69 49.3
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 8.2e-07 58.5 71 50.7
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 2.4e-06 57.0 35 85.7


User provided reference genes

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