Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 1.7e-39 165.6 88 100.0
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 5.8e-32 140.6 75 100.0
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 3.3e-27 124.8 75 89.3
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 4.0e-25 117.9 77 84.4
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 4.5e-24 114.4 75 84.0
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 7.6e-24 113.6 75 84.0
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 2.5e-22 108.6 75 77.3
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 3.2e-22 108.2 75 78.7
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 4.2e-22 107.8 87 67.8
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 1.6e-21 105.9 73 74.0
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 2.7e-21 105.1 87 70.1
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.7e-21 105.1 87 66.7
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 4.6e-21 104.4 87 69.0
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 7.9e-21 103.6 75 74.7
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.3e-20 102.8 77 75.3
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.8e-20 102.4 87 65.5
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.5e-19 99.4 75 72.0
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.5e-19 99.4 88 65.9
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 1.5e-19 99.4 78 74.4
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.5e-19 99.4 75 69.3
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 1.9e-19 99.0 75 70.7
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 1.9e-19 99.0 75 70.7
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 2.5e-19 98.6 75 69.3
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 4.3e-19 97.8 75 74.7
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 4.3e-19 97.8 76 71.1
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 5.7e-19 97.4 75 72.0
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 7.4e-19 97.1 87 65.5
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 9.7e-19 96.7 75 72.0
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 9.7e-19 96.7 73 68.5
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.3e-18 96.3 75 72.0
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.6e-18 95.9 75 72.0
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 1.6e-18 95.9 76 68.4
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 1.6e-18 95.9 75 72.0
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 2.2e-18 95.5 75 72.0
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 2.2e-18 95.5 75 73.3
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.2e-18 95.5 80 67.5
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 2.2e-18 95.5 75 72.0
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 3.7e-18 94.7 75 72.0
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 3.7e-18 94.7 73 67.1
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.7e-18 94.7 75 72.0
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.7e-18 94.7 73 67.1
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 4.8e-18 94.4 87 64.4
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 6.3e-18 94.0 75 70.7
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 6.3e-18 94.0 75 69.3
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 6.3e-18 94.0 75 73.3
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 8.2e-18 93.6 75 70.7
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 1.1e-17 93.2 76 71.1
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 1.1e-17 93.2 73 65.8
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 1.4e-17 92.8 87 64.4
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 1.8e-17 92.4 75 70.7
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.8e-17 92.4 65 73.8
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.1e-17 91.3 73 65.8
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 5.3e-17 90.9 75 69.3
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 6.9e-17 90.5 82 64.6
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 6.9e-17 90.5 78 67.9
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 9.0e-17 90.1 75 61.3
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 9.0e-17 90.1 88 62.5
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 1.2e-16 89.7 73 69.9
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 1.5e-16 89.4 73 67.1
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 1.5e-16 89.4 75 61.3
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.5e-16 89.4 75 64.0
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 2.0e-16 89.0 75 66.7
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 2.6e-16 88.6 75 66.7
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 2.6e-16 88.6 84 63.1
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 3.4e-16 88.2 75 65.3
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 3.4e-16 88.2 75 65.3
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 3.4e-16 88.2 75 64.0
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 3.4e-16 88.2 75 68.0
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 4.5e-16 87.8 52 84.6
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 5.9e-16 87.4 75 68.0
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 5.9e-16 87.4 75 68.0
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 5.9e-16 87.4 75 68.0
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 7.7e-16 87.0 75 68.0
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 7.7e-16 87.0 88 60.2
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 1.0e-15 86.7 75 65.3
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.3e-15 86.3 75 65.3
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 1.7e-15 85.9 76 60.5
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 2.2e-15 85.5 66 65.2
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 2.2e-15 85.5 81 58.0
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 2.2e-15 85.5 75 62.7
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.2e-15 85.5 75 60.0
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 2.9e-15 85.1 76 64.5
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 2.9e-15 85.1 75 68.0
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 3.8e-15 84.7 75 62.7
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 3.8e-15 84.7 65 67.7
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 6.5e-15 84.0 74 60.8
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 6.5e-15 84.0 76 65.8
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 6.5e-15 84.0 86 57.0
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 6.5e-15 84.0 88 59.1
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 8.5e-15 83.6 75 61.3
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 8.5e-15 83.6 57 70.2
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 8.5e-15 83.6 57 70.2
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 8.5e-15 83.6 57 70.2
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.1e-14 83.2 54 77.8
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.4e-14 82.8 74 66.2
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.9e-14 82.4 55 74.5
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.5e-14 82.0 61 63.9
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.5e-14 82.0 73 60.3
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 3.2e-14 81.6 73 57.5
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 3.2e-14 81.6 56 78.6
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 3.2e-14 81.6 75 61.3
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 3.2e-14 81.6 74 63.5
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 4.2e-14 81.3 73 57.5
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 4.2e-14 81.3 73 57.5
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 4.2e-14 81.3 73 57.5
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 4.2e-14 81.3 75 61.3
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 4.2e-14 81.3 75 61.3
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 4.2e-14 81.3 73 60.3
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 5.5e-14 80.9 59 69.5
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 5.5e-14 80.9 73 57.5
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 5.5e-14 80.9 73 57.5
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 5.5e-14 80.9 73 57.5
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 5.5e-14 80.9 73 63.0
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 7.2e-14 80.5 73 57.5
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 7.2e-14 80.5 76 63.2
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 9.4e-14 80.1 73 56.2
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 9.4e-14 80.1 80 58.8
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 9.4e-14 80.1 62 61.3
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.2e-13 79.7 55 67.3
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.2e-13 79.7 73 57.5
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.2e-13 79.7 73 64.4
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 1.2e-13 79.7 74 56.8
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.6e-13 79.3 76 61.8
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 1.6e-13 79.3 73 63.0
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 2.1e-13 79.0 75 64.0
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 2.1e-13 79.0 88 53.4
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 3.6e-13 78.2 73 54.8
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 3.6e-13 78.2 82 57.3
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 4.6e-13 77.8 68 64.7
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 4.6e-13 77.8 82 53.7
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.0e-12 76.6 61 60.7
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 1.4e-12 76.3 74 58.1
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.4e-12 76.3 89 55.1
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 1.8e-12 75.9 76 60.5
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 2.3e-12 75.5 75 56.0
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 6.7e-12 73.9 74 54.1
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.1e-11 73.2 73 52.1
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 2.5e-11 72.0 75 54.7
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.3e-10 69.7 75 53.3
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 1.1e-09 66.6 76 53.9
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.1e-09 66.6 82 52.4
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 3.1e-09 65.1 76 53.9
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 2.9e-07 58.5 71 50.7
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 4.2e-06 54.7 70 47.1


User provided reference genes

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