Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024408 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 1.2e-39 166.4 109 100.0
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 6.5e-25 117.5 108 83.3
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 3.0e-22 108.6 75 80.0
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 3.3e-16 88.6 102 62.7
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 1.6e-15 86.3 103 63.1
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 2.8e-15 85.5 72 65.3
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 8.0e-15 84.0 75 57.3
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 2.6e-13 79.0 75 56.0
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 3.4e-13 78.6 100 56.0
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 4.4e-13 78.2 102 63.7
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 7.5e-13 77.4 104 59.6
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 7.5e-13 77.4 72 59.7
Atru.chr6.1218 Acer truncatum HOM05D007310 ORTHO05D002375 1.7e-12 76.3 76 55.3
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 1.7e-12 76.3 102 60.8
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 3.7e-12 75.1 100 54.0
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 3.7e-12 75.1 70 58.6
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 4.9e-12 74.7 72 56.9
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 6.4e-12 74.3 74 58.1
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 6.4e-12 74.3 101 60.4
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 8.3e-12 73.9 104 51.0
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 1.1e-11 73.6 70 55.7
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 3.2e-11 72.0 101 60.4
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 4.1e-11 71.6 101 54.5
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 4.1e-11 71.6 99 51.5
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 4.1e-11 71.6 104 56.7
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 5.4e-11 71.2 72 54.2
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 7.0e-11 70.9 75 50.7
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 7.0e-11 70.9 72 51.4
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 9.2e-11 70.5 71 53.5
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 9.2e-11 70.5 104 41.3
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 1.2e-10 70.1 106 54.7
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 2.0e-10 69.3 74 51.4
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 2.7e-10 68.9 72 51.4
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 2.7e-10 68.9 72 51.4
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 2.7e-10 68.9 98 64.3
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 3.5e-10 68.6 100 64.0
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 4.6e-10 68.2 99 48.5
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 6.0e-10 67.8 74 50.0
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 6.0e-10 67.8 80 52.5
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 7.8e-10 67.4 75 45.3
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 1.0e-09 67.0 100 41.0
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 1.7e-09 66.2 106 57.5
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 1.7e-09 66.2 102 54.9
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 2.3e-09 65.9 100 54.0
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 2.3e-09 65.9 100 40.0
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 2.3e-09 65.9 100 43.0
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 3.0e-09 65.5 101 55.4
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 5.0e-09 64.7 75 46.7
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 5.0e-09 64.7 101 54.5
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 6.6e-09 64.3 102 51.0
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 6.6e-09 64.3 99 57.6
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 8.6e-09 63.9 100 56.0
Lsat_1_v5_gn_5_108861 Lactuca sativa HOM05D007310 ORTHO05D002375 8.6e-09 63.9 75 48.0
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 1.1e-08 63.5 76 47.4
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 1.9e-08 62.8 102 55.9
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 2.5e-08 62.4 70 47.1
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 2.5e-08 62.4 67 49.3
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 2.5e-08 62.4 70 47.1
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 3.3e-08 62.0 102 48.0
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 4.3e-08 61.6 68 73.5
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 4.3e-08 61.6 71 49.3
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 7.3e-08 60.8 99 47.5
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 7.3e-08 60.8 68 47.1
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 2.8e-07 58.9 106 32.1
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 2.8e-07 58.9 71 49.3
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 3.6e-07 58.5 66 43.9
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 3.6e-07 58.5 72 48.6
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 4.7e-07 58.2 101 48.5
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 6.2e-07 57.8 106 32.1
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 8.0e-07 57.4 66 50.0
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 1.8e-06 56.2 64 51.6
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 4.0e-06 55.1 72 44.4
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 4.0e-06 55.1 41 63.4
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 5.2e-06 54.7 70 44.3
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 8.9e-06 53.9 72 37.5


User provided reference genes

Program Settings